Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_22305 Sequoiadendron giganteum HOM05D002786 ORTHO05D003493 1.3e-108 396.4 189 100.0
SEGI_37762 Sequoiadendron giganteum HOM05D002786 ORTHO05D003493 1.8e-09 67.0 37 86.5
Pp3c9_22260 Physcomitrium patens HOM05D002786 ORTHO05D003493 4.3e-08 62.4 37 75.7
CDE07G0250 Ceratophyllum demersum HOM05D002786 ORTHO05D003493 5.7e-08 62.0 77 42.9
Mapoly0014s0213 Marchantia polymorpha HOM05D002786 ORTHO05D003493 9.7e-08 61.2 37 73.0
ECA233G2610 Erigeron canadensis HOM05D002786 ORTHO05D003493 1.3e-07 60.8 75 44.0
Ah.12g062150 Amaranthus hybridus HOM05D002786 ORTHO05D003493 1.6e-07 60.5 37 70.3
Aqoxy2G03945 Aquilegia oxysepala HOM05D002786 ORTHO05D003493 1.6e-07 60.5 77 40.3
ClCG08G003770 Citrullus lanatus HOM05D002786 ORTHO05D003493 1.6e-07 60.5 37 67.6
Ciclev10018740m.g Citrus clementina HOM05D002786 ORTHO05D003493 1.6e-07 60.5 37 67.6
MELO3C010592.2 Cucumis melo HOM05D002786 ORTHO05D003493 1.6e-07 60.5 37 67.6
CsaV3_1G023100 Cucumis sativus L. HOM05D002786 ORTHO05D003493 1.6e-07 60.5 37 67.6
Glyma.08G258700 Glycine max HOM05D002786 ORTHO05D003493 1.6e-07 60.5 37 67.6
Glyma.18G282800 Glycine max HOM05D002786 ORTHO05D003493 1.6e-07 60.5 37 67.6
Gohir.A02G013100 Gossypium hirsutum HOM05D002786 ORTHO05D003493 1.6e-07 60.5 37 67.6
Gohir.A09G210800 Gossypium hirsutum HOM05D002786 ORTHO05D003493 1.6e-07 60.5 37 67.6
Gohir.A10G136400 Gossypium hirsutum HOM05D002786 ORTHO05D003493 1.6e-07 60.5 37 67.6
Gohir.D10G130200 Gossypium hirsutum HOM05D002786 ORTHO05D003493 1.6e-07 60.5 37 67.6
Gorai.005G017400 Gossypium raimondii HOM05D002786 ORTHO05D003493 1.6e-07 60.5 37 67.6
Gorai.011G143900 Gossypium raimondii HOM05D002786 ORTHO05D003493 1.6e-07 60.5 37 67.6
MBI11_g04281_MAGBIO Magnolia biondii HOM05D002786 ORTHO05D003493 1.6e-07 60.5 37 67.6
Manes.04G061600 Manihot esculenta HOM05D002786 ORTHO05D003493 1.6e-07 60.5 37 67.6
Manes.11G114100 Manihot esculenta HOM05D002786 ORTHO05D003493 1.6e-07 60.5 37 67.6
Nn7g37146 Nelumbo nucifera HOM05D002786 ORTHO05D003493 1.6e-07 60.5 37 67.6
Phvul.008G018400 Phaseolus vulgaris HOM05D002786 ORTHO05D003493 1.6e-07 60.5 37 67.6
Sed0001099 Sechium edule HOM05D002786 ORTHO05D003493 1.6e-07 60.5 37 67.6
Sed0004282 Sechium edule HOM05D002786 ORTHO05D003493 1.6e-07 60.5 37 67.6
Thecc.04G180600 Theobroma cacao HOM05D002786 ORTHO05D003493 1.6e-07 60.5 37 67.6
Atru.chr3.1801 Acer truncatum HOM05D002786 ORTHO05D003493 2.2e-07 60.1 37 67.6
Ah.02g115110 Amaranthus hybridus HOM05D002786 ORTHO05D003493 2.2e-07 60.1 77 39.0
Duzib268G0977 Durio zibethinus HOM05D002786 ORTHO05D003493 2.2e-07 60.1 37 67.6
Gohir.D09G204200 Gossypium hirsutum HOM05D002786 ORTHO05D003493 2.2e-07 60.1 37 67.6
Gorai.006G228100 Gossypium raimondii HOM05D002786 ORTHO05D003493 2.2e-07 60.1 37 67.6
Potri.014G149600 Populus trichocarpa HOM05D002786 ORTHO05D003493 2.2e-07 60.1 37 70.3
EL10Ac5g11639 Beta vulgaris HOM05D002786 ORTHO05D003493 2.8e-07 59.7 37 67.6
Cfa008548 Carpinus fangiana HOM05D002786 ORTHO05D003493 2.8e-07 59.7 37 67.6
Haze_11083 Corylus avellana HOM05D002786 ORTHO05D003493 2.8e-07 59.7 37 67.6
Lsat_1_v5_gn_3_105661 Lactuca sativa HOM05D002786 ORTHO05D003493 2.8e-07 59.7 53 52.8
Lalb_Chr04g0258061 Lupinus albus HOM05D002786 ORTHO05D003493 2.8e-07 59.7 37 67.6
Potri.002G232600 Populus trichocarpa HOM05D002786 ORTHO05D003493 2.8e-07 59.7 37 67.6
ATR0609G059 Amborella trichopoda HOM05D002786 ORTHO05D003493 3.7e-07 59.3 37 70.3
MSTRG.21983 Avicennia marina HOM05D002786 ORTHO05D003493 3.7e-07 59.3 37 67.6
Migut.N00442 Erythranthe guttata HOM05D002786 ORTHO05D003493 3.7e-07 59.3 37 67.6
PSO017G6957 Papaver somniferum HOM05D002786 ORTHO05D003493 3.7e-07 59.3 37 64.9
PSO675G7863 Papaver somniferum HOM05D002786 ORTHO05D003493 3.7e-07 59.3 37 64.9
PGR135G0001 Punica granatum HOM05D002786 ORTHO05D003493 3.7e-07 59.3 37 64.9
Hund15147 Selenicereus undatus HOM05D002786 ORTHO05D003493 3.7e-07 59.3 37 64.9
SGA_v2.0_scaffold109G31145 Striga asiatica HOM05D002786 ORTHO05D003493 3.7e-07 59.3 37 67.6
Duzib151G0845 Durio zibethinus HOM05D002786 ORTHO05D003493 4.8e-07 58.9 37 64.9
Oeu007217.1 Olea europaea HOM05D002786 ORTHO05D003493 4.8e-07 58.9 75 38.7
Pp3c15_21650 Physcomitrium patens HOM05D002786 ORTHO05D003493 4.8e-07 58.9 37 70.3
Sc01g0005710 Simmondsia chinensis HOM05D002786 ORTHO05D003493 4.8e-07 58.9 37 64.9
arahy.Tifrunner.gnm1.ann1.0F4JWJ Arachis hypogaea HOM05D002786 ORTHO05D003493 6.3e-07 58.5 37 64.9
arahy.Tifrunner.gnm1.ann1.6D1JC0 Arachis hypogaea HOM05D002786 ORTHO05D003493 6.3e-07 58.5 37 64.9
CSS0033102 Camellia sinensis var. sinensis HOM05D002786 ORTHO05D003493 6.3e-07 58.5 37 64.9
CAN.G710.41 Capsicum annuum HOM05D002786 ORTHO05D003493 6.3e-07 58.5 37 64.9
AUR62036490 Chenopodium quinoa HOM05D002786 ORTHO05D003493 6.3e-07 58.5 37 64.9
AUR62037083 Chenopodium quinoa HOM05D002786 ORTHO05D003493 6.3e-07 58.5 37 64.9
Ca_07104_v3 Cicer arietinum L. HOM05D002786 ORTHO05D003493 6.3e-07 58.5 37 64.9
Ca_07106_v3 Cicer arietinum L. HOM05D002786 ORTHO05D003493 6.3e-07 58.5 37 64.9
Cc03_g10590 Coffea canephora HOM05D002786 ORTHO05D003493 6.3e-07 58.5 37 64.9
Dinv22652 Davidia involucrata HOM05D002786 ORTHO05D003493 6.3e-07 58.5 37 64.9
ECA246G5341 Erigeron canadensis HOM05D002786 ORTHO05D003493 6.3e-07 58.5 37 64.9
HanXRQChr03g0062991 Helianthus annuus HOM05D002786 ORTHO05D003493 6.3e-07 58.5 37 64.9
HanXRQChr15g0471871 Helianthus annuus HOM05D002786 ORTHO05D003493 6.3e-07 58.5 37 64.9
Lsat_1_v5_gn_4_22540 Lactuca sativa HOM05D002786 ORTHO05D003493 6.3e-07 58.5 37 64.9
Lj1g0019142 Lotus japonicus HOM05D002786 ORTHO05D003493 6.3e-07 58.5 37 64.9
MD04G1028800 Malus domestica HOM05D002786 ORTHO05D003493 6.3e-07 58.5 37 64.9
Medtr7g021500 Medicago truncatula HOM05D002786 ORTHO05D003493 6.3e-07 58.5 37 64.9
Nitab4.5_0001526g0120 Nicotiana tabacum HOM05D002786 ORTHO05D003493 6.3e-07 58.5 37 64.9
Nitab4.5_0001687g0080 Nicotiana tabacum HOM05D002786 ORTHO05D003493 6.3e-07 58.5 37 64.9
Peaxi162Scf00286g00442 Petunia axillaris HOM05D002786 ORTHO05D003493 6.3e-07 58.5 37 64.9
Psat3g188480 Pisum sativum HOM05D002786 ORTHO05D003493 6.3e-07 58.5 37 64.9
Prupe.1G180500 Prunus persica HOM05D002786 ORTHO05D003493 6.3e-07 58.5 37 64.9
Rhsim09G0037400 Rhododendron simsii HOM05D002786 ORTHO05D003493 6.3e-07 58.5 37 64.9
Sabra02G0177400 Salix brachista HOM05D002786 ORTHO05D003493 6.3e-07 58.5 45 55.6
TPR.G2948 Trifolium pratense HOM05D002786 ORTHO05D003493 6.3e-07 58.5 37 64.9
vmacro00563 Vaccinium macrocarpon HOM05D002786 ORTHO05D003493 6.3e-07 58.5 37 64.9
Zm00001eb002050 Zea mays HOM05D002786 ORTHO05D003493 6.3e-07 58.5 41 53.7
Actinidia35908 Actinidia chinensis HOM05D002786 ORTHO05D003493 8.2e-07 58.2 37 64.9
Duzib212G1023 Durio zibethinus HOM05D002786 ORTHO05D003493 8.2e-07 58.2 37 64.9
FvH4_4g12200 Fragaria vesca HOM05D002786 ORTHO05D003493 8.2e-07 58.2 37 67.6
FAN07G1377 Fragaria x ananassa HOM05D002786 ORTHO05D003493 8.2e-07 58.2 37 67.6
FAN12G0646 Fragaria x ananassa HOM05D002786 ORTHO05D003493 8.2e-07 58.2 37 67.6
FAN12G1472 Fragaria x ananassa HOM05D002786 ORTHO05D003493 8.2e-07 58.2 37 67.6
FAN17G1115 Fragaria x ananassa HOM05D002786 ORTHO05D003493 8.2e-07 58.2 37 67.6
FAN22G0173 Fragaria x ananassa HOM05D002786 ORTHO05D003493 8.2e-07 58.2 37 67.6
Lj1g0005822 Lotus japonicus HOM05D002786 ORTHO05D003493 8.2e-07 58.2 37 64.9
Os04g0337201 Oryza sativa ssp. japonica HOM05D002786 ORTHO05D003493 8.2e-07 58.2 77 37.7
RcHm_v2.0_Chr4g0409961 Rosa chinensis HOM05D002786 ORTHO05D003493 8.2e-07 58.2 37 67.6
AT2G31660 Arabidopsis thaliana HOM05D002786 ORTHO05D003493 1.1e-06 57.8 37 67.6
Carub.0004s1296 Capsella rubella HOM05D002786 ORTHO05D003493 1.1e-06 57.8 37 67.6
CARHR125290 Cardamine hirsuta HOM05D002786 ORTHO05D003493 1.1e-06 57.8 37 67.6
Cpa.g.sc50.133 Carica papaya HOM05D002786 ORTHO05D003493 1.1e-06 57.8 37 64.9
Thhalv10016172m.g Eutrema salsugineum HOM05D002786 ORTHO05D003493 1.1e-06 57.8 37 67.6
Sp4g14060 Schrenkiella parvula HOM05D002786 ORTHO05D003493 1.1e-06 57.8 37 67.6
THA.LOC104803420 Tarenaya hassleriana HOM05D002786 ORTHO05D003493 1.1e-06 57.8 37 62.2
unitig_21.g20552 Utricularia gibba HOM05D002786 ORTHO05D003493 1.1e-06 57.8 37 64.9
Zm00001eb241000 Zea mays HOM05D002786 ORTHO05D003493 1.1e-06 57.8 77 36.4
AL4G26900 Arabidopsis lyrata HOM05D002786 ORTHO05D003493 1.4e-06 57.4 37 64.9
C04p60880 Brassica napus HOM05D002786 ORTHO05D003493 1.4e-06 57.4 37 67.6
CiPaw.01G108500 Carya illinoinensis HOM05D002786 ORTHO05D003493 1.4e-06 57.4 37 62.2
CiPaw.02G059800 Carya illinoinensis HOM05D002786 ORTHO05D003493 1.4e-06 57.4 37 62.2
DCAR_030308 Daucus carota HOM05D002786 ORTHO05D003493 1.4e-06 57.4 37 62.2
ECA234G1297 Erigeron canadensis HOM05D002786 ORTHO05D003493 1.4e-06 57.4 37 62.2
Hma1.2p1_0412F.1_g147160 Hydrangea macrophylla HOM05D002786 ORTHO05D003493 1.4e-06 57.4 37 62.2
Lj6A731T90 Lonicera japonica HOM05D002786 ORTHO05D003493 1.4e-06 57.4 37 62.2
Lj5g0000254 Lotus japonicus HOM05D002786 ORTHO05D003493 1.4e-06 57.4 37 62.2
Oeu013399.2 Olea europaea HOM05D002786 ORTHO05D003493 1.4e-06 57.4 37 62.2
QL10p044188 Quercus lobata HOM05D002786 ORTHO05D003493 1.4e-06 57.4 37 62.2
SEGI_20916 Sequoiadendron giganteum HOM05D002786 ORTHO05D003493 1.4e-06 57.4 42 66.7
Solyc09g098240.4 Solanum lycopersicum HOM05D002786 ORTHO05D003493 1.4e-06 57.4 37 64.9
Sopen09g036180 Solanum pennellii HOM05D002786 ORTHO05D003493 1.4e-06 57.4 37 64.9
TAR376G1173 Trochodendron aralioides HOM05D002786 ORTHO05D003493 1.4e-06 57.4 37 64.9
MSTRG.24604 Avicennia marina HOM05D002786 ORTHO05D003493 1.8e-06 57.0 37 64.9
CSS0009663 Camellia sinensis var. sinensis HOM05D002786 ORTHO05D003493 1.8e-06 57.0 37 59.5
Carub.0005s2578 Capsella rubella HOM05D002786 ORTHO05D003493 1.8e-06 57.0 37 62.2
DCAR_002652 Daucus carota HOM05D002786 ORTHO05D003493 1.8e-06 57.0 37 62.2
Lalb_Chr02g0144511 Lupinus albus HOM05D002786 ORTHO05D003493 1.8e-06 57.0 37 62.2
Lalb_Chr06g0164651 Lupinus albus HOM05D002786 ORTHO05D003493 1.8e-06 57.0 37 59.5
Os02g0474700 Oryza sativa ssp. japonica HOM05D002786 ORTHO05D003493 1.8e-06 57.0 37 62.2
VMungo0720G0240 Vigna mungo HOM05D002786 ORTHO05D003493 1.8e-06 57.0 37 59.5
Zm00001eb180520 Zea mays HOM05D002786 ORTHO05D003493 1.8e-06 57.0 37 62.2
AT3G59020 Arabidopsis thaliana HOM05D002786 ORTHO05D003493 2.4e-06 56.6 37 64.9
BcaB02g10406 Brassica carinata HOM05D002786 ORTHO05D003493 2.4e-06 56.6 37 64.9
BcaB06g28532 Brassica carinata HOM05D002786 ORTHO05D003493 2.4e-06 56.6 55 50.9
BcaC01g05937 Brassica carinata HOM05D002786 ORTHO05D003493 2.4e-06 56.6 37 64.9
BcaC02g11274 Brassica carinata HOM05D002786 ORTHO05D003493 2.4e-06 56.6 37 64.9
A03p17820 Brassica napus HOM05D002786 ORTHO05D003493 2.4e-06 56.6 37 64.9
A05p13850 Brassica napus HOM05D002786 ORTHO05D003493 2.4e-06 56.6 37 64.9
C03p20890 Brassica napus HOM05D002786 ORTHO05D003493 2.4e-06 56.6 37 64.9
C04p18220 Brassica napus HOM05D002786 ORTHO05D003493 2.4e-06 56.6 37 64.9
BolC3t14469H Brassica oleracea HOM05D002786 ORTHO05D003493 2.4e-06 56.6 37 64.9
BolC4t23379H Brassica oleracea HOM05D002786 ORTHO05D003493 2.4e-06 56.6 37 64.9
BraA03t11046Z Brassica rapa HOM05D002786 ORTHO05D003493 2.4e-06 56.6 37 64.9
BraA05t20321Z Brassica rapa HOM05D002786 ORTHO05D003493 2.4e-06 56.6 37 64.9
DCAR_026823 Daucus carota HOM05D002786 ORTHO05D003493 2.4e-06 56.6 37 59.5
Lalb_Chr10g0092141 Lupinus albus HOM05D002786 ORTHO05D003493 2.4e-06 56.6 37 62.2
MBI07_g00622_MAGBIO Magnolia biondii HOM05D002786 ORTHO05D003493 2.4e-06 56.6 37 62.2
THA.LOC104815866 Tarenaya hassleriana HOM05D002786 ORTHO05D003493 2.4e-06 56.6 37 64.9
Zm00001eb072120 Zea mays HOM05D002786 ORTHO05D003493 2.4e-06 56.6 37 59.5
Aa31LG10G13510 Aethionema arabicum HOM05D002786 ORTHO05D003493 3.1e-06 56.2 37 62.2
BcaB01g04029 Brassica carinata HOM05D002786 ORTHO05D003493 3.1e-06 56.2 37 64.9
BolC4t27579H Brassica oleracea HOM05D002786 ORTHO05D003493 3.1e-06 56.2 37 64.9
BraA04t17935Z Brassica rapa HOM05D002786 ORTHO05D003493 3.1e-06 56.2 37 64.9
Eucgr.H02619 Eucalyptus grandis HOM05D002786 ORTHO05D003493 3.1e-06 56.2 37 62.2
Thhalv10005763m.g Eutrema salsugineum HOM05D002786 ORTHO05D003493 3.1e-06 56.2 37 62.2
MD00G1128300 Malus domestica HOM05D002786 ORTHO05D003493 3.1e-06 56.2 37 62.2
SalBow6G0725 Salvia bowleyana HOM05D002786 ORTHO05D003493 3.1e-06 56.2 37 64.9
BcaC01g06114 Brassica carinata HOM05D002786 ORTHO05D003493 4.1e-06 55.8 37 62.2
Ca_11422_v3 Cicer arietinum L. HOM05D002786 ORTHO05D003493 4.1e-06 55.8 37 59.5
Lj1g0021376 Lotus japonicus HOM05D002786 ORTHO05D003493 4.1e-06 55.8 37 62.2
Phvul.007G001700 Phaseolus vulgaris HOM05D002786 ORTHO05D003493 4.1e-06 55.8 37 56.8
CBR_g40497 Chara braunii HOM05D002786 ORTHO05D003493 5.3e-06 55.5 77 36.4
AL5G40900 Arabidopsis lyrata HOM05D002786 ORTHO05D003493 6.9e-06 55.1 37 59.5
BcaB02g07490 Brassica carinata HOM05D002786 ORTHO05D003493 6.9e-06 55.1 37 59.5
BcaB02g08232 Brassica carinata HOM05D002786 ORTHO05D003493 6.9e-06 55.1 37 59.5
BcaC02g10037 Brassica carinata HOM05D002786 ORTHO05D003493 6.9e-06 55.1 37 59.5
BcaC08g44950 Brassica carinata HOM05D002786 ORTHO05D003493 6.9e-06 55.1 37 59.5
A07p24410 Brassica napus HOM05D002786 ORTHO05D003493 6.9e-06 55.1 37 59.5
C04p33640 Brassica napus HOM05D002786 ORTHO05D003493 6.9e-06 55.1 37 59.5
C06p25840 Brassica napus HOM05D002786 ORTHO05D003493 6.9e-06 55.1 37 59.5
BolC4t24933H Brassica oleracea HOM05D002786 ORTHO05D003493 6.9e-06 55.1 37 59.5
BolC6t37745H Brassica oleracea HOM05D002786 ORTHO05D003493 6.9e-06 55.1 37 59.5
BraA07t30088Z Brassica rapa HOM05D002786 ORTHO05D003493 6.9e-06 55.1 37 59.5
HanXRQChr16g0527621 Helianthus annuus HOM05D002786 ORTHO05D003493 6.9e-06 55.1 37 62.2
Sp5g03960 Schrenkiella parvula HOM05D002786 ORTHO05D003493 6.9e-06 55.1 37 59.5
GSVIVG01031670001 Vitis vinifera HOM05D002786 ORTHO05D003493 6.9e-06 55.1 37 59.5
A04p02290 Brassica napus HOM05D002786 ORTHO05D003493 9.0e-06 54.7 37 56.8
BraA04t15960Z Brassica rapa HOM05D002786 ORTHO05D003493 9.0e-06 54.7 37 56.8
HPP92_013646 Vanilla planifolia HOM05D002786 ORTHO05D003493 9.0e-06 54.7 37 59.5


User provided reference genes

Program Settings