Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_21771 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 4.7e-164 581.3 321 100.0
SEGI_12250 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 3.0e-110 402.5 280 75.0
Pp3c7_220 Physcomitrium patens HOM05D004048 ORTHO05D004859 3.4e-106 389.0 238 81.5
COL.COLO4_12778 Corchorus olitorius HOM05D004048 ORTHO05D004859 1.1e-104 384.0 238 79.0
Gohir.D08G043100 Gossypium hirsutum HOM05D004048 ORTHO05D004859 9.4e-104 380.9 247 76.9
Prupe.2G177600 Prunus persica HOM05D004048 ORTHO05D004859 1.6e-103 380.2 238 78.6
Gorai.004G041700 Gossypium raimondii HOM05D004048 ORTHO05D004859 2.1e-103 379.8 247 76.9
Gohir.A08G032200 Gossypium hirsutum HOM05D004048 ORTHO05D004859 3.6e-103 379.0 246 76.0
Nn1g01686 Nelumbo nucifera HOM05D004048 ORTHO05D004859 4.6e-103 378.6 245 75.9
TWI23G0617 Tripterygium wilfordii HOM05D004048 ORTHO05D004859 6.1e-103 378.3 239 77.0
Actinidia10075 Actinidia chinensis HOM05D004048 ORTHO05D004859 1.0e-102 377.5 238 77.7
Ciclev10020577m.g Citrus clementina HOM05D004048 ORTHO05D004859 1.0e-102 377.5 238 78.2
Potri.014G090500 Populus trichocarpa HOM05D004048 ORTHO05D004859 1.0e-102 377.5 238 76.9
MD07G1131200 Malus domestica HOM05D004048 ORTHO05D004859 2.3e-102 376.3 238 78.2
CAN.G439.29 Capsicum annuum HOM05D004048 ORTHO05D004859 3.9e-102 375.6 238 76.9
Migut.B01799 Erythranthe guttata HOM05D004048 ORTHO05D004859 3.9e-102 375.6 244 76.2
BcaC08g45130 Brassica carinata HOM05D004048 ORTHO05D004859 6.7e-102 374.8 245 74.7
A07p25550 Brassica napus HOM05D004048 ORTHO05D004859 6.7e-102 374.8 245 74.7
BolC6t37921H Brassica oleracea HOM05D004048 ORTHO05D004859 6.7e-102 374.8 245 74.7
BraA07t30196Z Brassica rapa HOM05D004048 ORTHO05D004859 6.7e-102 374.8 245 74.7
CSS0027402 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 6.7e-102 374.8 244 75.4
Duzib268G0835 Durio zibethinus HOM05D004048 ORTHO05D004859 6.7e-102 374.8 239 77.4
Aqoxy5G04084 Aquilegia oxysepala HOM05D004048 ORTHO05D004859 8.8e-102 374.4 238 77.3
A09p53600 Brassica napus HOM05D004048 ORTHO05D004859 8.8e-102 374.4 246 75.2
C06p27540 Brassica napus HOM05D004048 ORTHO05D004859 8.8e-102 374.4 245 74.7
Sabra14G0065600 Salix brachista HOM05D004048 ORTHO05D004859 8.8e-102 374.4 238 76.5
Dinv32522 Davidia involucrata HOM05D004048 ORTHO05D004859 1.1e-101 374.0 238 76.5
Manes.05G029300 Manihot esculenta HOM05D004048 ORTHO05D004859 1.1e-101 374.0 262 71.4
Sp5g01880 Schrenkiella parvula HOM05D004048 ORTHO05D004859 1.1e-101 374.0 245 75.1
AUR62004413 Chenopodium quinoa HOM05D004048 ORTHO05D004859 1.5e-101 373.6 238 76.9
Nitab4.5_0000615g0020 Nicotiana tabacum HOM05D004048 ORTHO05D004859 2.0e-101 373.2 238 76.9
THA.LOC104817317 Tarenaya hassleriana HOM05D004048 ORTHO05D004859 2.0e-101 373.2 238 76.1
TAR375G1056 Trochodendron aralioides HOM05D004048 ORTHO05D004859 2.0e-101 373.2 235 77.4
AL5G43890 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 2.5e-101 372.9 243 74.9
Sc01g0003210 Simmondsia chinensis HOM05D004048 ORTHO05D004859 2.5e-101 372.9 238 75.6
AT2G46110 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 3.3e-101 372.5 252 73.0
QL04p055532 Quercus lobata HOM05D004048 ORTHO05D004859 3.3e-101 372.5 251 72.9
Rhsim07G0010400 Rhododendron simsii HOM05D004048 ORTHO05D004859 3.3e-101 372.5 235 77.9
AUR62022619 Chenopodium quinoa HOM05D004048 ORTHO05D004859 4.3e-101 372.1 236 77.1
BcaB02g07374 Brassica carinata HOM05D004048 ORTHO05D004859 5.7e-101 371.7 245 73.9
Thecc.01G352400 Theobroma cacao HOM05D004048 ORTHO05D004859 5.7e-101 371.7 239 76.2
Cc02_g21240 Coffea canephora HOM05D004048 ORTHO05D004859 7.4e-101 371.3 242 75.6
Thhalv10001521m.g Eutrema salsugineum HOM05D004048 ORTHO05D004859 7.4e-101 371.3 252 73.0
Lj9C589T5 Lonicera japonica HOM05D004048 ORTHO05D004859 7.4e-101 371.3 255 72.5
MBI03_g34597_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 7.4e-101 371.3 236 78.0
PGR004G0897 Punica granatum HOM05D004048 ORTHO05D004859 7.4e-101 371.3 244 74.6
Sp4g28180 Schrenkiella parvula HOM05D004048 ORTHO05D004859 7.4e-101 371.3 252 73.0
Carub.0004s2881 Capsella rubella HOM05D004048 ORTHO05D004859 9.7e-101 370.9 252 73.0
PSO170G0644 Papaver somniferum HOM05D004048 ORTHO05D004859 1.3e-100 370.5 238 75.6
SGA_v2.0_scaffold4G02279 Striga asiatica HOM05D004048 ORTHO05D004859 1.3e-100 370.5 238 76.1
Peaxi162Scf00217g00711 Petunia axillaris HOM05D004048 ORTHO05D004859 1.7e-100 370.2 255 71.4
Hund27241 Selenicereus undatus HOM05D004048 ORTHO05D004859 1.7e-100 370.2 239 75.7
Hma1.2p1_0335F.1_g128890 Hydrangea macrophylla HOM05D004048 ORTHO05D004859 2.2e-100 369.8 235 75.7
CSS0029554 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 2.8e-100 369.4 244 74.6
Oeu054354.2 Olea europaea HOM05D004048 ORTHO05D004859 2.8e-100 369.4 232 78.4
PSO063G1481 Papaver somniferum HOM05D004048 ORTHO05D004859 2.8e-100 369.4 238 75.2
EL10Ac1g00354 Beta vulgaris HOM05D004048 ORTHO05D004859 3.7e-100 369.0 238 76.1
Haze_15565 Corylus avellana HOM05D004048 ORTHO05D004859 3.7e-100 369.0 239 74.9
Solyc09g007130.3 Solanum lycopersicum HOM05D004048 ORTHO05D004859 3.7e-100 369.0 238 75.6
FAN03G0096 Fragaria x ananassa HOM05D004048 ORTHO05D004859 4.8e-100 368.6 238 77.3
vmacro13227 Vaccinium macrocarpon HOM05D004048 ORTHO05D004859 4.8e-100 368.6 239 76.2
Aa31LG10G15450 Aethionema arabicum HOM05D004048 ORTHO05D004859 6.3e-100 368.2 238 75.6
BcaC07g40651 Brassica carinata HOM05D004048 ORTHO05D004859 6.3e-100 368.2 246 74.0
BolC8t51222H Brassica oleracea HOM05D004048 ORTHO05D004859 6.3e-100 368.2 246 74.0
BraA09t40782Z Brassica rapa HOM05D004048 ORTHO05D004859 6.3e-100 368.2 246 74.8
Eucgr.B01988 Eucalyptus grandis HOM05D004048 ORTHO05D004859 6.3e-100 368.2 236 75.0
Gohir.D08G154300 Gossypium hirsutum HOM05D004048 ORTHO05D004859 8.2e-100 367.9 239 75.3
Gorai.004G160400 Gossypium raimondii HOM05D004048 ORTHO05D004859 8.2e-100 367.9 239 75.3
PGSC0003DMG400002011 Solanum tuberosum HOM05D004048 ORTHO05D004859 1.1e-99 367.5 238 74.8
AT3G61530 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 1.4e-99 367.1 243 74.1
C08p36390 Brassica napus HOM05D004048 ORTHO05D004859 1.4e-99 367.1 246 74.0
Ah.05g180160 Amaranthus hybridus HOM05D004048 ORTHO05D004859 1.8e-99 366.7 248 72.6
HPP92_005267 Vanilla planifolia HOM05D004048 ORTHO05D004859 1.8e-99 366.7 238 75.2
RcHm_v2.0_Chr1g0357691 Rosa chinensis HOM05D004048 ORTHO05D004859 3.1e-99 365.9 238 76.9
CiPaw.02G034800 Carya illinoinensis HOM05D004048 ORTHO05D004859 4.1e-99 365.5 238 76.1
VMungo0331G0386 Vigna mungo HOM05D004048 ORTHO05D004859 4.1e-99 365.5 250 72.0
FvH4_7g15370 Fragaria vesca HOM05D004048 ORTHO05D004859 5.3e-99 365.2 238 76.5
AagrBONN_evm.TU.Sc2ySwM_117.2358 Anthoceros agrestis HOM05D004048 ORTHO05D004859 6.9e-99 364.8 240 74.6
FAN06G1753 Fragaria x ananassa HOM05D004048 ORTHO05D004859 6.9e-99 364.8 238 76.5
Glyma.07G064600 Glycine max HOM05D004048 ORTHO05D004859 6.9e-99 364.8 238 76.1
Lalb_Chr17g0338041 Lupinus albus HOM05D004048 ORTHO05D004859 6.9e-99 364.8 239 77.4
AagrBONN_evm.TU.Sc2ySwM_117.1042 Anthoceros agrestis HOM05D004048 ORTHO05D004859 9.1e-99 364.4 240 74.6
HanXRQChr17g0562171 Helianthus annuus HOM05D004048 ORTHO05D004859 2.0e-98 363.2 243 75.7
Lj1g0027864 Lotus japonicus HOM05D004048 ORTHO05D004859 2.0e-98 363.2 244 74.6
arahy.Tifrunner.gnm1.ann1.9CR96V Arachis hypogaea HOM05D004048 ORTHO05D004859 2.6e-98 362.8 249 72.7
CANSAT56G4107 Cannabis sativa HOM05D004048 ORTHO05D004859 3.4e-98 362.5 238 74.4
DCAR_025214 Daucus carota HOM05D004048 ORTHO05D004859 3.4e-98 362.5 239 74.9
FAN10G1698 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.4e-98 362.5 238 76.1
FAN10G3606 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.4e-98 362.5 238 76.1
Lsat_1_v5_gn_4_35260 Lactuca sativa HOM05D004048 ORTHO05D004859 3.4e-98 362.5 252 72.6
arahy.Tifrunner.gnm1.ann1.8BBS1S Arachis hypogaea HOM05D004048 ORTHO05D004859 5.9e-98 361.7 249 72.7
arahy.Tifrunner.gnm1.ann1.8G3C0P Arachis hypogaea HOM05D004048 ORTHO05D004859 5.9e-98 361.7 238 74.8
CsaV3_7G025860 Cucumis sativus L. HOM05D004048 ORTHO05D004859 1.7e-97 360.1 244 72.5
Psat4g156920 Pisum sativum HOM05D004048 ORTHO05D004859 2.2e-97 359.8 270 69.3
TPR.G28287 Trifolium pratense HOM05D004048 ORTHO05D004859 2.9e-97 359.4 238 74.8
ATR0751G082 Amborella trichopoda HOM05D004048 ORTHO05D004859 6.5e-97 358.2 232 76.3
Zm00001eb339000 Zea mays HOM05D004048 ORTHO05D004859 6.5e-97 358.2 243 74.5
Carub.0005s2822 Capsella rubella HOM05D004048 ORTHO05D004859 1.4e-96 357.1 236 73.7
Rhsim07G0205800 Rhododendron simsii HOM05D004048 ORTHO05D004859 1.4e-96 357.1 274 67.9
TPR.G37181 Trifolium pratense HOM05D004048 ORTHO05D004859 1.9e-96 356.7 238 74.4
Lj5g0009706 Lotus japonicus HOM05D004048 ORTHO05D004859 2.5e-96 356.3 238 75.2
Mapoly0035s0043 Marchantia polymorpha HOM05D004048 ORTHO05D004859 3.2e-96 355.9 238 76.5
Duzib138G1147 Durio zibethinus HOM05D004048 ORTHO05D004859 4.2e-96 355.5 268 67.9
Medtr8g028555 Medicago truncatula HOM05D004048 ORTHO05D004859 4.2e-96 355.5 238 74.8
BcaC07g40671 Brassica carinata HOM05D004048 ORTHO05D004859 9.4e-96 354.4 252 70.2
FAN06G0189 Fragaria x ananassa HOM05D004048 ORTHO05D004859 9.4e-96 354.4 255 71.4
RcHm_v2.0_Chr1g0357711 Rosa chinensis HOM05D004048 ORTHO05D004859 3.6e-95 352.4 238 73.5
Rhsim07G0206900 Rhododendron simsii HOM05D004048 ORTHO05D004859 1.0e-94 350.9 288 63.9
Atru.chr7.1494 Acer truncatum HOM05D004048 ORTHO05D004859 3.9e-94 349.0 243 71.6
CBR_g45417 Chara braunii HOM05D004048 ORTHO05D004859 8.8e-94 347.8 235 74.0
ATR0751G137 Amborella trichopoda HOM05D004048 ORTHO05D004859 2.0e-93 346.7 235 73.2
Nitab4.5_0005222g0030 Nicotiana tabacum HOM05D004048 ORTHO05D004859 2.0e-93 346.7 238 73.9
MELO3C014805.2 Cucumis melo HOM05D004048 ORTHO05D004859 5.7e-93 345.1 244 70.5
SMO144G0210 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 5.7e-93 345.1 238 73.1
Ca_03490_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 1.1e-91 340.9 267 66.7
MELO3C012767.2 Cucumis melo HOM05D004048 ORTHO05D004859 5.9e-90 335.1 301 59.1
ClCG09G009090 Citrullus lanatus HOM05D004048 ORTHO05D004859 3.8e-89 332.4 210 76.7
Sopen09g002000 Solanum pennellii HOM05D004048 ORTHO05D004859 5.0e-89 332.0 210 77.1
MCO13G154 Micromonas commoda HOM05D004048 ORTHO05D004859 6.5e-89 331.6 238 68.9
unitig_60.g25627 Utricularia gibba HOM05D004048 ORTHO05D004859 3.0e-86 322.8 240 69.6
Cre12.g508550 Chlamydomonas reinhardtii HOM05D004048 ORTHO05D004859 2.0e-85 320.1 238 66.8
FvH4_7g15371 Fragaria vesca HOM05D004048 ORTHO05D004859 5.7e-85 318.5 267 63.7
Phvul.010G104900 Phaseolus vulgaris HOM05D004048 ORTHO05D004859 1.7e-84 317.0 198 78.8
ECA234G0147 Erigeron canadensis HOM05D004048 ORTHO05D004859 2.2e-84 316.6 195 81.0
Os01g0225500 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 1.6e-82 310.5 217 69.6
FAN06G4041 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.7e-81 307.0 227 70.0
Cpa.g.sc11.73 Carica papaya HOM05D004048 ORTHO05D004859 3.8e-81 305.8 206 74.3
SMO119G0299 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 3.8e-81 305.8 217 68.7
Glyma.09G254700 Glycine max HOM05D004048 ORTHO05D004859 1.1e-80 304.3 217 72.4
CARHR107270 Cardamine hirsuta HOM05D004048 ORTHO05D004859 5.5e-80 302.0 241 65.1
PRCOL_00005166 Prasinoderma coloniale HOM05D004048 ORTHO05D004859 7.2e-80 301.6 246 62.6
SMO356G0035 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 4.7e-79 298.9 217 67.7
Nn6g32447 Nelumbo nucifera HOM05D004048 ORTHO05D004859 8.0e-79 298.1 186 78.0
GSVIVG01026967001 Vitis vinifera HOM05D004048 ORTHO05D004859 1.8e-70 270.4 170 77.6
FAN10G3616 Fragaria x ananassa HOM05D004048 ORTHO05D004859 8.8e-70 268.1 280 56.4
Gohir.A08G133000 Gossypium hirsutum HOM05D004048 ORTHO05D004859 3.7e-68 262.7 170 76.5
Medtr4g037245 Medicago truncatula HOM05D004048 ORTHO05D004859 3.5e-66 256.1 194 68.0
FAN06G1997 Fragaria x ananassa HOM05D004048 ORTHO05D004859 7.7e-66 255.0 232 60.8
CDE11G0110 Ceratophyllum demersum HOM05D004048 ORTHO05D004859 3.6e-63 246.1 160 76.2
Medtr4g037305 Medicago truncatula HOM05D004048 ORTHO05D004859 7.0e-59 231.9 154 76.0
BcaC07g42671 Brassica carinata HOM05D004048 ORTHO05D004859 1.0e-57 228.0 243 53.1
Cfa001640 Carpinus fangiana HOM05D004048 ORTHO05D004859 9.5e-56 221.5 259 50.2
Eucgr.B01984 Eucalyptus grandis HOM05D004048 ORTHO05D004859 1.2e-55 221.1 236 53.0
FAN10G1509 Fragaria x ananassa HOM05D004048 ORTHO05D004859 9.2e-51 204.9 154 70.8
arahy.Tifrunner.gnm1.ann1.CIF5FW Arachis hypogaea HOM05D004048 ORTHO05D004859 1.5e-48 197.6 151 63.6
SHI16536 Sapria himalayana HOM05D004048 ORTHO05D004859 6.0e-42 175.6 113 72.6
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 6.6e-41 172.2 200 48.5
AL4G45340 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 1.5e-40 171.0 109 78.0
Eucgr.B01986 Eucalyptus grandis HOM05D004048 ORTHO05D004859 4.7e-39 166.0 182 53.8
SEGI_25526 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 2.4e-35 153.7 82 96.3
Haze_27487 Corylus avellana HOM05D004048 ORTHO05D004859 3.5e-34 149.8 178 43.8
MBI17_g16531_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 3.0e-33 146.7 104 65.4
CAN.G439.28 Capsicum annuum HOM05D004048 ORTHO05D004859 1.9e-32 144.1 95 69.5
MBI12_g43904_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 1.4e-30 137.9 96 74.0
Ca_03489_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 1.8e-30 137.5 117 64.1
Medtr4g037275 Medicago truncatula HOM05D004048 ORTHO05D004859 5.4e-27 125.9 76 77.6
TPR.G28294 Trifolium pratense HOM05D004048 ORTHO05D004859 5.4e-27 125.9 167 49.1
Actinidia20163 Actinidia chinensis HOM05D004048 ORTHO05D004859 2.4e-22 110.5 152 50.0
SGA_v2.0_scaffold4G02383 Striga asiatica HOM05D004048 ORTHO05D051375 2.1e-18 97.4 63 81.0
HanXRQChr15g0474641 Helianthus annuus HOM05D004048 ORTHO05D004859 1.0e-17 95.1 62 77.4
FAN10G2371 Fragaria x ananassa HOM05D004048 ORTHO05D038698 3.9e-17 93.2 79 64.6
AL4G45350 Arabidopsis lyrata HOM05D004048 ORTHO05D038698 2.5e-16 90.5 71 62.0
Cfa003872 Carpinus fangiana HOM05D004048 ORTHO05D004859 2.2e-12 77.4 51 68.6
DCAR_025216 Daucus carota HOM05D003118 ORTHO05D003618 5.4e-11 72.8 145 39.3
PGSC0003DMG400018716 Solanum tuberosum HOM05D004048 ORTHO05D004859 1.0e-09 68.6 48 66.7
Os01g0225400 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 1.9e-08 64.3 41 73.2
arahy.Tifrunner.gnm1.ann1.GKUV9U Arachis hypogaea HOM05D004048 ORTHO05D004859 9.0e-06 55.5 45 62.2


User provided reference genes

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