Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_20820 Sequoiadendron giganteum HOM05D006587 ORTHO05D008487 2.8e-50 201.8 117 100.0
COL.COLO4_06205 Corchorus olitorius HOM05D006587 ORTHO05D008487 5.8e-11 71.2 61 63.9
Eucgr.H03560 Eucalyptus grandis HOM05D006587 ORTHO05D008487 7.5e-11 70.9 78 56.4
CSS0022730 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 2.2e-10 69.3 47 80.9
CSS0044999 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 2.2e-10 69.3 47 80.9
CiPaw.02G094600 Carya illinoinensis HOM05D006587 ORTHO05D008487 2.2e-10 69.3 57 63.2
AT5G19300 Arabidopsis thaliana HOM05D006587 ORTHO05D008487 2.9e-10 68.9 62 62.9
Aa31LG11G10390 Aethionema arabicum HOM05D006587 ORTHO05D008487 3.7e-10 68.6 51 70.6
CARHR193670 Cardamine hirsuta HOM05D006587 ORTHO05D008487 8.3e-10 67.4 52 73.1
Thhalv10013731m.g Eutrema salsugineum HOM05D006587 ORTHO05D008487 8.3e-10 67.4 62 64.5
AL6G30780 Arabidopsis lyrata HOM05D006587 ORTHO05D008487 1.1e-09 67.0 52 71.2
Carub.0006s1763 Capsella rubella HOM05D006587 ORTHO05D008487 1.1e-09 67.0 58 65.5
Manes.03G181700 Manihot esculenta HOM05D006587 ORTHO05D008487 1.1e-09 67.0 42 83.3
Cfa015608 Carpinus fangiana HOM05D006587 ORTHO05D006035 1.4e-09 66.6 59 62.7
Duzib151G0305 Durio zibethinus HOM05D006587 ORTHO05D008487 1.4e-09 66.6 38 89.5
Sp6g25120 Schrenkiella parvula HOM05D006587 ORTHO05D008487 1.9e-09 66.2 52 67.3
CDE05G0907 Ceratophyllum demersum HOM05D006587 ORTHO05D008487 2.4e-09 65.9 38 89.5
ClCG05G005300 Citrullus lanatus HOM05D006587 ORTHO05D008487 2.4e-09 65.9 38 89.5
MELO3C006549.2 Cucumis melo HOM05D006587 ORTHO05D008487 2.4e-09 65.9 38 89.5
Dinv38415 Davidia involucrata HOM05D006587 ORTHO05D008487 2.4e-09 65.9 38 89.5
THA.LOC104818820 Tarenaya hassleriana HOM05D006587 ORTHO05D008487 3.2e-09 65.5 39 87.2
Actinidia23494 Actinidia chinensis HOM05D006587 ORTHO05D008487 4.1e-09 65.1 38 89.5
MSTRG.24750 Avicennia marina HOM05D006587 ORTHO05D008487 4.1e-09 65.1 72 51.4
CSS0008441 Camellia sinensis var. sinensis HOM05D006587 ORTHO05D008487 4.1e-09 65.1 38 89.5
Peaxi162Scf01336g00122 Petunia axillaris HOM05D006587 ORTHO05D008487 4.1e-09 65.1 42 78.6
PGR004G2885 Punica granatum HOM05D006587 ORTHO05D008487 4.1e-09 65.1 38 89.5
TAR362G0294 Trochodendron aralioides HOM05D006587 ORTHO05D008487 4.1e-09 65.1 38 89.5
TAR362G0446 Trochodendron aralioides HOM05D006587 ORTHO05D008487 4.1e-09 65.1 38 89.5
TAR633G1367 Trochodendron aralioides HOM05D006587 ORTHO05D008487 4.1e-09 65.1 38 89.5
Thecc.04G226500 Theobroma cacao HOM05D006587 ORTHO05D008487 5.4e-09 64.7 38 89.5
Aqoxy2G03328 Aquilegia oxysepala HOM05D006587 ORTHO05D008487 7.1e-09 64.3 39 87.2
Os04g0244500 Oryza sativa ssp. japonica HOM05D006587 ORTHO05D008487 7.1e-09 64.3 39 84.6
Rhsim04G0204300 Rhododendron simsii HOM05D006587 ORTHO05D008487 7.1e-09 64.3 38 84.2
Solyc01g079710.3 Solanum lycopersicum HOM05D006587 ORTHO05D008487 7.1e-09 64.3 51 68.6
Sopen01g031480 Solanum pennellii HOM05D006587 ORTHO05D008487 7.1e-09 64.3 51 68.6
BcaB08g36587 Brassica carinata HOM05D006587 ORTHO05D008487 9.2e-09 63.9 41 78.0
CAN.G69.11 Capsicum annuum HOM05D006587 ORTHO05D008487 9.2e-09 63.9 38 84.2
CsaV3_3G013530 Cucumis sativus L. HOM05D006587 ORTHO05D008487 9.2e-09 63.9 38 86.8
Potri.010G091400 Populus trichocarpa HOM05D006587 ORTHO05D008487 9.2e-09 63.9 38 86.8
PGSC0003DMG400008999 Solanum tuberosum HOM05D006587 ORTHO05D008487 9.2e-09 63.9 51 66.7
Zm00001eb373340 Zea mays HOM05D006587 ORTHO05D008487 9.2e-09 63.9 38 86.8
Aqoxy2G03329 Aquilegia oxysepala HOM05D006587 ORTHO05D008487 1.2e-08 63.5 55 65.5
Cc03_g03390 Coffea canephora HOM05D006587 ORTHO05D008487 1.2e-08 63.5 38 84.2
Haze_00934 Corylus avellana HOM05D006587 ORTHO05D008487 1.2e-08 63.5 38 84.2
Pp3c7_20660 Physcomitrium patens HOM05D006587 ORTHO05D008487 1.2e-08 63.5 41 80.5
Sed0010167 Sechium edule HOM05D006587 ORTHO05D008487 1.2e-08 63.5 38 86.8
C09p56970 Brassica napus HOM05D006587 ORTHO05D008487 1.6e-08 63.2 46 71.7
Hma1.2p1_0511F.1_g168960 Hydrangea macrophylla HOM05D006587 ORTHO05D008487 1.6e-08 63.2 38 86.8
Oeu040660.1 Olea europaea HOM05D006587 ORTHO05D008487 1.6e-08 63.2 39 84.6
Potri.008G149800 Populus trichocarpa HOM05D006587 ORTHO05D008487 1.6e-08 63.2 38 81.6
Sabra08G0113900 Salix brachista HOM05D006587 ORTHO05D008487 1.6e-08 63.2 38 81.6
SMO364G0578 Selaginella moellendorffii HOM05D006587 ORTHO05D008487 1.6e-08 63.2 57 59.6
Sc19g0004360 Simmondsia chinensis HOM05D006587 ORTHO05D008487 1.6e-08 63.2 38 81.6
SGA_v2.0_scaffold10G05110 Striga asiatica HOM05D006587 ORTHO05D008487 1.6e-08 63.2 38 86.8
TWI73G1280 Tripterygium wilfordii HOM05D006587 ORTHO05D008487 1.6e-08 63.2 38 84.2
BcaC04g18580 Brassica carinata HOM05D006587 ORTHO05D008487 2.1e-08 62.8 42 76.2
BolC9t58560H Brassica oleracea HOM05D006587 ORTHO05D008487 2.1e-08 62.8 42 76.2
Cpa.g.sc147.29 Carica papaya HOM05D006587 ORTHO05D008487 2.1e-08 62.8 52 69.2
Gorai.002G024100 Gossypium raimondii HOM05D006587 ORTHO05D008487 2.1e-08 62.8 38 81.6
MD16G1187700 Malus domestica HOM05D006587 ORTHO05D008487 2.1e-08 62.8 57 63.2
Nitab4.5_0000144g0120 Nicotiana tabacum HOM05D006587 ORTHO05D008487 2.1e-08 62.8 39 82.1
Nitab4.5_0000180g0030 Nicotiana tabacum HOM05D006587 ORTHO05D008487 2.1e-08 62.8 63 60.3
QL06p003535 Quercus lobata HOM05D006587 ORTHO05D008487 2.1e-08 62.8 38 84.2
A10p20380 Brassica napus HOM05D006587 ORTHO05D008487 2.7e-08 62.4 39 79.5
BraA10t44108Z Brassica rapa HOM05D006587 ORTHO05D008487 2.7e-08 62.4 39 79.5
Gohir.A01G023600 Gossypium hirsutum HOM05D006587 ORTHO05D008487 2.7e-08 62.4 38 78.9
Gohir.D01G021600 Gossypium hirsutum HOM05D006587 ORTHO05D008487 2.7e-08 62.4 38 78.9
Lsat_1_v5_gn_9_80941 Lactuca sativa HOM05D006587 ORTHO05D008487 2.7e-08 62.4 51 66.7
Migut.N00169 Erythranthe guttata HOM05D006587 ORTHO05D008487 4.6e-08 61.6 38 78.9
Ciclev10005176m.g Citrus clementina HOM05D006587 ORTHO05D008487 6.0e-08 61.2 38 81.6
AagrBONN_evm.TU.Sc2ySwM_340.504 Anthoceros agrestis HOM05D006587 ORTHO05D008487 7.8e-08 60.8 38 78.9
HanXRQChr13g0400281 Helianthus annuus HOM05D006587 ORTHO05D008487 7.8e-08 60.8 52 63.5
MD13G1186800 Malus domestica HOM05D006587 ORTHO05D008487 7.8e-08 60.8 38 84.2
unitig_899.g15640 Utricularia gibba HOM05D006587 ORTHO05D008487 7.8e-08 60.8 71 53.5
GSVIVG01017920001 Vitis vinifera HOM05D006587 ORTHO05D008487 7.8e-08 60.8 38 84.2
CANSAT78G1956 Cannabis sativa HOM05D006587 ORTHO05D008487 1.0e-07 60.5 38 81.6
DCAR_002398 Daucus carota HOM05D006587 ORTHO05D008487 1.0e-07 60.5 53 64.2
ECA236G2554 Erigeron canadensis HOM05D006587 ORTHO05D008487 1.0e-07 60.5 38 81.6
Gorai.004G106600 Gossypium raimondii HOM05D006587 ORTHO05D008487 1.0e-07 60.5 38 76.3
PSO170G4636 Papaver somniferum HOM05D006587 ORTHO05D008487 1.0e-07 60.5 38 78.9
PSO302G0285 Papaver somniferum HOM05D006587 ORTHO05D008487 1.0e-07 60.5 38 78.9
RcHm_v2.0_Chr4g0417131 Rosa chinensis HOM05D006587 ORTHO05D008487 1.0e-07 60.5 38 76.3
Prupe.1G154500 Prunus persica HOM05D006587 ORTHO05D008487 1.3e-07 60.1 38 81.6
FvH4_4g14960 Fragaria vesca HOM05D006587 ORTHO05D008487 1.7e-07 59.7 38 73.7
FAN07G2036 Fragaria x ananassa HOM05D006587 ORTHO05D008487 1.7e-07 59.7 38 73.7
FAN12G2172 Fragaria x ananassa HOM05D006587 ORTHO05D006391 1.7e-07 59.7 38 73.7
FAN17G1856 Fragaria x ananassa HOM05D000104 ORTHO05D006391 1.7e-07 59.7 38 73.7
FAN22G2243 Fragaria x ananassa HOM05D000104 ORTHO05D006391 1.7e-07 59.7 38 73.7
SalBow5G0644 Salvia bowleyana HOM05D006587 ORTHO05D008487 1.7e-07 59.7 39 76.9
SalBow5G2730 Salvia bowleyana HOM05D006587 ORTHO05D008487 1.7e-07 59.7 39 76.9
Glyma.10G250600 Glycine max HOM05D006587 ORTHO05D008487 2.3e-07 59.3 38 81.6
Lj5g0006939 Lotus japonicus HOM05D006587 ORTHO05D008487 2.3e-07 59.3 38 81.6
Atru.chr4.2522 Acer truncatum HOM05D006587 ORTHO05D008487 3.0e-07 58.9 38 78.9
Actinidia40165 Actinidia chinensis HOM05D006587 ORTHO05D008487 3.0e-07 58.9 35 88.6
Lalb_Chr06g0164781 Lupinus albus HOM05D006587 ORTHO05D008487 3.0e-07 58.9 38 81.6
HPP92_010726 Vanilla planifolia HOM05D006587 ORTHO05D008487 3.0e-07 58.9 38 78.9
Ca_10966_v3 Cicer arietinum L. HOM05D006587 ORTHO05D008487 3.9e-07 58.5 38 78.9
Glyma.20G143100 Glycine max HOM05D006587 ORTHO05D008487 8.6e-07 57.4 77 45.5
Ah.13g074000 Amaranthus hybridus HOM05D006587 ORTHO05D008487 1.5e-06 56.6 38 78.9
arahy.Tifrunner.gnm1.ann1.G9UJER Arachis hypogaea HOM05D006587 ORTHO05D008487 1.5e-06 56.6 39 76.9
arahy.Tifrunner.gnm1.ann1.HZWC9V Arachis hypogaea HOM05D006587 ORTHO05D008487 1.5e-06 56.6 39 76.9
Mapoly0049s0075 Marchantia polymorpha HOM05D006587 ORTHO05D008487 1.9e-06 56.2 45 66.7
EL10As3g23313 Beta vulgaris HOM05D006587 ORTHO05D008487 2.5e-06 55.8 38 76.3
Phvul.007G053900 Phaseolus vulgaris HOM05D006587 ORTHO05D008487 2.5e-06 55.8 38 76.3
VMungo0720G0184 Vigna mungo HOM05D006587 ORTHO05D008487 2.5e-06 55.8 38 76.3
Psat6g209880 Pisum sativum HOM05D006587 ORTHO05D008487 5.6e-06 54.7 38 76.3
TPR.G5533 Trifolium pratense HOM05D006587 ORTHO05D008487 5.6e-06 54.7 38 76.3
ATR0626G244 Amborella trichopoda HOM05D006587 ORTHO05D008487 7.3e-06 54.3 57 59.6
PRCOL_00002662 Prasinoderma coloniale HOM05D006587 ORTHO05D008487 9.5e-06 53.9 43 62.8


User provided reference genes

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