Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_20818 Sequoiadendron giganteum HOM05D001813 ORTHO05D383949 1.2e-135 486.5 245 100.0
SEGI_36113 Sequoiadendron giganteum HOM05D001813 ORTHO05D004073 1.2e-13 81.3 79 62.0
Nn8g39938 Nelumbo nucifera HOM05D001813 ORTHO05D004073 3.8e-12 76.3 79 59.5
Nn2g12417 Nelumbo nucifera HOM05D001813 ORTHO05D004073 8.4e-12 75.1 79 57.0
TAR376G0331 Trochodendron aralioides HOM05D001813 ORTHO05D004073 1.4e-11 74.3 79 58.2
Thecc.08G178600 Theobroma cacao HOM05D001813 ORTHO05D004073 1.9e-11 73.9 79 58.2
Gohir.D08G250500 Gossypium hirsutum HOM05D001813 ORTHO05D004073 3.2e-11 73.2 79 58.2
Gorai.004G267200 Gossypium raimondii HOM05D001813 ORTHO05D004073 3.2e-11 73.2 79 58.2
Ah.07g204380 Amaranthus hybridus HOM05D001813 ORTHO05D004073 4.2e-11 72.8 79 58.2
ATR0665G656 Amborella trichopoda HOM05D001813 ORTHO05D004073 4.2e-11 72.8 62 67.7
CSS0003534 Camellia sinensis var. sinensis HOM05D001813 ORTHO05D004073 4.2e-11 72.8 62 66.1
CSS0039369 Camellia sinensis var. sinensis HOM05D001813 ORTHO05D004073 4.2e-11 72.8 62 66.1
vmacro06015 Vaccinium macrocarpon HOM05D001813 ORTHO05D004073 4.2e-11 72.8 79 57.0
MBI01_g01228_MAGBIO Magnolia biondii HOM05D001813 ORTHO05D004073 7.1e-11 72.0 119 43.7
COL.COLO4_05233 Corchorus olitorius HOM05D001813 ORTHO05D004073 9.3e-11 71.6 79 57.0
Dinv07668 Davidia involucrata HOM05D001813 ORTHO05D004073 9.3e-11 71.6 79 57.0
Dinv22110 Davidia involucrata HOM05D001813 ORTHO05D004073 9.3e-11 71.6 79 57.0
MBI04_g20663_MAGBIO Magnolia biondii HOM05D001813 ORTHO05D004073 9.3e-11 71.6 79 57.0
arahy.Tifrunner.gnm1.ann1.45GZWB Arachis hypogaea HOM05D001813 ORTHO05D004073 1.2e-10 71.2 79 55.7
arahy.Tifrunner.gnm1.ann1.IH7417 Arachis hypogaea HOM05D001813 ORTHO05D004073 1.2e-10 71.2 79 55.7
ClCG08G001130 Citrullus lanatus HOM05D001813 ORTHO05D004073 1.2e-10 71.2 79 57.0
MELO3C022170.2 Cucumis melo HOM05D001813 ORTHO05D004073 1.2e-10 71.2 79 57.0
CsaV3_5G039900 Cucumis sativus L. HOM05D001813 ORTHO05D004073 1.2e-10 71.2 79 57.0
Manes.18G116401 Manihot esculenta HOM05D001813 ORTHO05D004073 1.2e-10 71.2 79 55.7
TWI12G0391 Tripterygium wilfordii HOM05D001813 ORTHO05D004073 1.2e-10 71.2 79 57.0
QL09p001828 Quercus lobata HOM05D001813 ORTHO05D004073 1.6e-10 70.9 79 55.7
QL11p001782 Quercus lobata HOM05D001813 ORTHO05D004073 1.6e-10 70.9 79 55.7
Sed0001278 Sechium edule HOM05D001813 ORTHO05D004073 1.6e-10 70.9 79 55.7
Sed0008498 Sechium edule HOM05D001813 ORTHO05D004073 1.6e-10 70.9 79 55.7
Sc19g0000480 Simmondsia chinensis HOM05D001813 ORTHO05D004073 1.6e-10 70.9 79 55.7
CANSAT25G1500 Cannabis sativa HOM05D001813 ORTHO05D004073 2.1e-10 70.5 79 55.7
Eucgr.F02952 Eucalyptus grandis HOM05D001813 ORTHO05D004073 2.1e-10 70.5 79 54.4
Gohir.A08G230100 Gossypium hirsutum HOM05D001813 ORTHO05D004073 2.1e-10 70.5 79 55.7
Lalb_Chr12g0205681 Lupinus albus HOM05D001813 ORTHO05D004073 2.1e-10 70.5 79 55.7
PSO017G5299 Papaver somniferum HOM05D001813 ORTHO05D004073 2.1e-10 70.5 79 57.0
PSO170G5669 Papaver somniferum HOM05D001813 ORTHO05D004073 2.1e-10 70.5 79 57.0
Aa31LG9G16010 Aethionema arabicum HOM05D001813 ORTHO05D004073 2.7e-10 70.1 79 54.4
Cfa008078 Carpinus fangiana HOM05D001813 ORTHO05D004073 2.7e-10 70.1 79 55.7
Haze_13957 Corylus avellana HOM05D001813 ORTHO05D004073 2.7e-10 70.1 79 55.7
Duzib177G0714 Durio zibethinus HOM05D001813 ORTHO05D004073 2.7e-10 70.1 79 55.7
Lj8A621G19 Lonicera japonica HOM05D001813 ORTHO05D004073 2.7e-10 70.1 79 54.4
TWI75G0485 Tripterygium wilfordii HOM05D001813 ORTHO05D004073 2.7e-10 70.1 79 57.0
FvH4_2g00800 Fragaria vesca HOM05D001813 ORTHO05D004073 3.5e-10 69.7 79 54.4
FAN20G2120 Fragaria x ananassa HOM05D001813 ORTHO05D004073 3.5e-10 69.7 79 54.4
FAN27G3012 Fragaria x ananassa HOM05D001813 ORTHO05D004073 3.5e-10 69.7 79 54.4
HanXRQChr02g0051121 Helianthus annuus HOM05D001813 ORTHO05D004073 3.5e-10 69.7 80 55.0
Aqoxy2G01446 Aquilegia oxysepala HOM05D001813 ORTHO05D018408 4.6e-10 69.3 79 55.7
Aqoxy3G00793 Aquilegia oxysepala HOM05D001813 ORTHO05D004073 4.6e-10 69.3 79 55.7
EL10Ac3g05151 Beta vulgaris HOM05D001813 ORTHO05D004073 4.6e-10 69.3 79 57.0
Ca_18000_v3 Cicer arietinum L. HOM05D001813 ORTHO05D004073 4.6e-10 69.3 79 55.7
Lsat_1_v5_gn_4_107960 Lactuca sativa HOM05D001813 ORTHO05D004073 4.6e-10 69.3 79 55.7
Medtr8g083210 Medicago truncatula HOM05D001813 ORTHO05D004073 4.6e-10 69.3 79 55.7
Rhsim01G0004600 Rhododendron simsii HOM05D001813 ORTHO05D004073 4.6e-10 69.3 79 55.7
Sabra19G0083600 Salix brachista HOM05D001813 ORTHO05D004073 4.6e-10 69.3 57 66.7
GSVIVG01036290001 Vitis vinifera HOM05D001813 ORTHO05D004073 4.6e-10 69.3 79 54.4
Atru.chr13.2521 Acer truncatum HOM05D001813 ORTHO05D004073 6.0e-10 68.9 79 53.2
Atru.chr13.2615 Acer truncatum HOM05D001813 ORTHO05D004073 6.0e-10 68.9 79 53.2
AL7G34320 Arabidopsis lyrata HOM05D001813 ORTHO05D004073 6.0e-10 68.9 79 53.2
AT4G19710 Arabidopsis thaliana HOM05D001813 ORTHO05D004073 6.0e-10 68.9 79 53.2
BcaNung01751 Brassica carinata HOM05D001813 ORTHO05D004073 6.0e-10 68.9 79 53.2
CARHR226530 Cardamine hirsuta HOM05D001813 ORTHO05D004073 6.0e-10 68.9 79 53.2
CiPaw.03G014400 Carya illinoinensis HOM05D001813 ORTHO05D004073 6.0e-10 68.9 79 54.4
Cc10_g08630 Coffea canephora HOM05D001813 ORTHO05D004073 6.0e-10 68.9 79 55.7
Hma1.2p1_0417F.1_g148930 Hydrangea macrophylla HOM05D001813 ORTHO05D004073 6.0e-10 68.9 79 54.4
Mapoly0016s0043 Marchantia polymorpha HOM05D001813 ORTHO05D004073 6.0e-10 68.9 79 53.2
Oeu028109.1 Olea europaea HOM05D001813 ORTHO05D004073 6.0e-10 68.9 79 54.4
SalBow7G2902 Salvia bowleyana HOM05D001813 ORTHO05D004073 6.0e-10 68.9 80 55.0
Sp7g18310 Schrenkiella parvula HOM05D001813 ORTHO05D004073 6.0e-10 68.9 79 53.2
THA.LOC104812709 Tarenaya hassleriana HOM05D001813 ORTHO05D004073 6.0e-10 68.9 79 53.2
Aa31LG6G2270 Aethionema arabicum HOM05D001813 ORTHO05D004073 7.8e-10 68.6 79 53.2
Carub.0007s2144 Capsella rubella HOM05D001813 ORTHO05D004073 7.8e-10 68.6 79 53.2
CAN.G14.55 Capsicum annuum HOM05D001813 ORTHO05D004073 7.8e-10 68.6 79 54.4
CDE02G3059 Ceratophyllum demersum HOM05D001813 ORTHO05D004073 7.8e-10 68.6 79 54.4
RcHm_v2.0_Chr6g0251231 Rosa chinensis HOM05D001813 ORTHO05D004073 7.8e-10 68.6 79 54.4
BcaC09g51372 Brassica carinata HOM05D001813 ORTHO05D004073 1.0e-09 68.2 62 61.3
A01p11690 Brassica napus HOM05D001813 ORTHO05D004073 1.0e-09 68.2 62 61.3
C01p13830 Brassica napus HOM05D001813 ORTHO05D004073 1.0e-09 68.2 62 61.3
BraA01t01111Z Brassica rapa HOM05D001813 ORTHO05D004073 1.0e-09 68.2 62 61.3
CDE04G0141 Ceratophyllum demersum HOM05D001813 ORTHO05D004073 1.0e-09 68.2 79 55.7
ECA232G1733 Erigeron canadensis HOM05D001813 ORTHO05D004073 1.0e-09 68.2 79 55.7
Thhalv10024340m.g Eutrema salsugineum HOM05D001813 ORTHO05D004073 1.0e-09 68.2 79 53.2
FAN24G2627 Fragaria x ananassa HOM05D001813 ORTHO05D004073 1.0e-09 68.2 78 53.8
HanXRQChr09g0269231 Helianthus annuus HOM05D001813 ORTHO05D004073 1.0e-09 68.2 79 54.4
MD05G1003800 Malus domestica HOM05D001813 ORTHO05D004073 1.0e-09 68.2 79 53.2
Manes.02G201600 Manihot esculenta HOM05D001813 ORTHO05D004073 1.0e-09 68.2 79 53.2
Manes.12G153700 Manihot esculenta HOM05D001813 ORTHO05D004073 1.0e-09 68.2 62 62.9
Peaxi162Scf00818g00531 Petunia axillaris HOM05D001813 ORTHO05D004073 1.0e-09 68.2 78 53.8
Potri.019G071700 Populus trichocarpa HOM05D001813 ORTHO05D004073 1.0e-09 68.2 79 54.4
Sabra13G0085300 Salix brachista HOM05D001813 ORTHO05D004073 1.0e-09 68.2 79 53.2
THA.LOC104812911 Tarenaya hassleriana HOM05D001813 ORTHO05D004073 1.0e-09 68.2 79 53.2
THA.LOC104813352 Tarenaya hassleriana HOM05D001813 ORTHO05D004073 1.0e-09 68.2 79 53.2
TPR.G11916 Trifolium pratense HOM05D001813 ORTHO05D004073 1.0e-09 68.2 79 55.7
MSTRG.25497 Avicennia marina HOM05D001813 ORTHO05D004073 1.3e-09 67.8 79 53.2
CAN.G83.2 Capsicum annuum HOM05D001813 ORTHO05D004073 1.3e-09 67.8 79 54.4
Ciclev10023926m.g Citrus clementina HOM05D001813 ORTHO05D004073 1.3e-09 67.8 79 51.9
Migut.C01380 Erythranthe guttata HOM05D001813 ORTHO05D004073 1.3e-09 67.8 79 54.4
Glyma.05G151100 Glycine max HOM05D001813 ORTHO05D004073 1.3e-09 67.8 79 54.4
Glyma.08G107800 Glycine max HOM05D001813 ORTHO05D004073 1.3e-09 67.8 79 54.4
Nitab4.5_0000213g0120 Nicotiana tabacum HOM05D001813 ORTHO05D004073 1.3e-09 67.8 79 54.4
Nitab4.5_0003723g0020 Nicotiana tabacum HOM05D001813 ORTHO05D004073 1.3e-09 67.8 79 54.4
Peaxi162Scf00078g00736 Petunia axillaris HOM05D001813 ORTHO05D004073 1.3e-09 67.8 79 54.4
Psat7g075960 Pisum sativum HOM05D001813 ORTHO05D004073 1.3e-09 67.8 79 54.4
SMO358G0576 Selaginella moellendorffii HOM05D001813 ORTHO05D004073 1.3e-09 67.8 79 50.6
Solyc11g040390.2 Solanum lycopersicum HOM05D001813 ORTHO05D004073 1.3e-09 67.8 79 54.4
Sopen11g018430 Solanum pennellii HOM05D001813 ORTHO05D004073 1.3e-09 67.8 79 54.4
CSS0044883 Camellia sinensis var. sinensis HOM05D001813 ORTHO05D004073 1.7e-09 67.4 79 54.4
AUR62005967 Chenopodium quinoa HOM05D001813 ORTHO05D004073 1.7e-09 67.4 79 53.2
AUR62028102 Chenopodium quinoa HOM05D001813 ORTHO05D004073 1.7e-09 67.4 79 53.2
Phvul.011G012000 Phaseolus vulgaris HOM05D001813 ORTHO05D004073 1.7e-09 67.4 79 53.2
Potri.013G099500 Populus trichocarpa HOM05D001813 ORTHO05D004073 1.7e-09 67.4 79 54.4
SGA_v2.0_scaffold24G10648 Striga asiatica HOM05D001813 ORTHO05D004073 1.7e-09 67.4 57 66.7
AL1G49250 Arabidopsis lyrata HOM05D001813 ORTHO05D004073 2.3e-09 67.0 79 51.9
Hund21072 Selenicereus undatus HOM05D001813 ORTHO05D004073 2.3e-09 67.0 79 53.2
vmacro13124 Vaccinium macrocarpon HOM05D001813 ORTHO05D004073 2.3e-09 67.0 79 55.7
BolC1t01351H Brassica oleracea HOM05D001813 ORTHO05D004073 3.0e-09 66.6 62 59.7
Ciclev10018756m.g Citrus clementina HOM05D001813 ORTHO05D004073 3.0e-09 66.6 57 63.2
Lj4g0024431 Lotus japonicus HOM05D001813 ORTHO05D004073 3.0e-09 66.6 62 61.3
Lalb_Chr13g0294741 Lupinus albus HOM05D001813 ORTHO05D004073 3.0e-09 66.6 79 54.4
Nitab4.5_0002654g0030 Nicotiana tabacum HOM05D001813 ORTHO05D004073 3.0e-09 66.6 79 54.4
Nitab4.5_0010319g0010 Nicotiana tabacum HOM05D001813 ORTHO05D004073 3.0e-09 66.6 79 54.4
Prupe.5G007500 Prunus persica HOM05D001813 ORTHO05D004073 3.0e-09 66.6 79 51.9
PGR042G3523 Punica granatum HOM05D001813 ORTHO05D004073 3.0e-09 66.6 79 55.7
SalBow1G7856 Salvia bowleyana HOM05D001813 ORTHO05D004073 3.0e-09 66.6 79 51.9
SalBow6G6680 Salvia bowleyana HOM05D001813 ORTHO05D004073 3.0e-09 66.6 79 51.9
Aa31LG2G15160 Aethionema arabicum HOM05D001813 ORTHO05D004073 3.9e-09 66.2 79 50.6
Os08g0342400 Oryza sativa ssp. japonica HOM05D001813 ORTHO05D004073 3.9e-09 66.2 79 53.2
AT1G31230 Arabidopsis thaliana HOM05D001813 ORTHO05D004073 5.1e-09 65.9 79 50.6
BcaB07g32785 Brassica carinata HOM05D001813 ORTHO05D004073 5.1e-09 65.9 79 50.6
BcaC05g27153 Brassica carinata HOM05D001813 ORTHO05D004073 5.1e-09 65.9 79 50.6
A09p35010 Brassica napus HOM05D001813 ORTHO05D004073 5.1e-09 65.9 79 50.6
C05p30420 Brassica napus HOM05D001813 ORTHO05D004073 5.1e-09 65.9 79 50.6
BolC5t31779H Brassica oleracea HOM05D001813 ORTHO05D004073 5.1e-09 65.9 79 50.6
BraA09t39032Z Brassica rapa HOM05D001813 ORTHO05D004073 5.1e-09 65.9 79 50.6
Carub.0001s2963 Capsella rubella HOM05D001813 ORTHO05D004073 5.1e-09 65.9 79 50.6
CARHR030710 Cardamine hirsuta HOM05D001813 ORTHO05D004073 5.1e-09 65.9 79 50.6
CiPaw.04G009200 Carya illinoinensis HOM05D001813 ORTHO05D004073 5.1e-09 65.9 79 51.9
DCAR_003713 Daucus carota HOM05D001813 ORTHO05D004073 5.1e-09 65.9 57 64.9
Thhalv10006741m.g Eutrema salsugineum HOM05D001813 ORTHO05D004073 5.1e-09 65.9 79 50.6
Rhsim03G0264300 Rhododendron simsii HOM05D001813 ORTHO05D004073 5.1e-09 65.9 79 55.7
Sp1g27040 Schrenkiella parvula HOM05D001813 ORTHO05D004073 5.1e-09 65.9 79 50.6
TPR.G30756 Trifolium pratense HOM05D001813 ORTHO05D004073 5.1e-09 65.9 79 53.2
Glyma.18G002866 Glycine max HOM05D001813 ORTHO05D022754 6.6e-09 65.5 85 49.4
Solyc06g064550.3 Solanum lycopersicum HOM05D001813 ORTHO05D004073 6.6e-09 65.5 62 61.3
Sopen06g023030 Solanum pennellii HOM05D001813 ORTHO05D004073 6.6e-09 65.5 62 61.3
PGSC0003DMG400033126 Solanum tuberosum HOM05D001813 ORTHO05D004073 6.6e-09 65.5 62 61.3
Actinidia17319 Actinidia chinensis HOM05D001813 ORTHO05D004073 8.7e-09 65.1 79 53.2
Lsat_1_v5_gn_6_29841 Lactuca sativa HOM05D001813 ORTHO05D018408 8.7e-09 65.1 92 48.9
Psat5g099120 Pisum sativum HOM05D001813 ORTHO05D004073 8.7e-09 65.1 62 62.9
Oeu023196.1 Olea europaea HOM05D001813 ORTHO05D004073 1.1e-08 64.7 79 51.9
Prupe.8G007000 Prunus persica HOM05D001813 ORTHO05D004073 1.5e-08 64.3 79 51.9
Ca_16425_v3 Cicer arietinum L. HOM05D001813 ORTHO05D004073 1.9e-08 63.9 62 61.3
MD10G1004700 Malus domestica HOM05D001813 ORTHO05D004073 2.5e-08 63.5 79 49.4
Zm00001eb177530 Zea mays HOM05D001813 ORTHO05D004073 2.5e-08 63.5 79 51.9
AagrBONN_evm.TU.Sc2ySwM_117.4081 Anthoceros agrestis HOM05D001813 ORTHO05D004073 4.3e-08 62.8 55 63.6
VMungo1383G2091 Vigna mungo HOM05D001813 ORTHO05D004073 7.3e-08 62.0 79 50.6
CBR_g26412 Chara braunii HOM05D001813 ORTHO05D004073 9.6e-08 61.6 54 64.8
unitig_37.g13078 Utricularia gibba HOM05D001813 ORTHO05D004073 1.6e-07 60.8 79 49.4
Phvul.001G265600 Phaseolus vulgaris HOM05D001813 ORTHO05D004073 2.8e-07 60.1 79 50.6
Os09g0294000 Oryza sativa ssp. japonica HOM05D001813 ORTHO05D004073 3.6e-07 59.7 79 50.6
Lj6g0010107 Lotus japonicus HOM05D001813 ORTHO05D004073 6.2e-07 58.9 83 51.8
Medtr3g084500 Medicago truncatula HOM05D001813 ORTHO05D004073 6.2e-07 58.9 79 49.4
Pp3c16_8500 Physcomitrium patens HOM05D001813 ORTHO05D004073 8.1e-07 58.5 79 45.6
Pp3c25_5870 Physcomitrium patens HOM05D001813 ORTHO05D004073 8.1e-07 58.5 79 48.1
Zm00001eb097580 Zea mays HOM05D001813 ORTHO05D004073 2.4e-06 57.0 79 49.4
Zm00001eb309070 Zea mays HOM05D001813 ORTHO05D004073 2.4e-06 57.0 79 49.4
Pp3c5_15490 Physcomitrium patens HOM05D001813 ORTHO05D004073 5.3e-06 55.8 79 45.6


User provided reference genes

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