Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_20287 Sequoiadendron giganteum HOM05D001891 ORTHO05D005832 3.1e-173 611.7 309 100.0
MBI18_g19140_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 2.6e-50 203.4 162 59.9
TAR624G1196 Trochodendron aralioides HOM05D001891 ORTHO05D005832 3.4e-50 203.0 144 62.5
Pp3c13_21910 Physcomitrium patens HOM05D001891 ORTHO05D005832 1.7e-49 200.7 154 63.0
CiPaw.03G162900 Carya illinoinensis HOM05D001891 ORTHO05D005832 2.8e-49 199.9 163 58.3
MBI18_g23508_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 2.8e-49 199.9 162 59.3
Eucgr.K00860 Eucalyptus grandis HOM05D001891 ORTHO05D005832 8.3e-49 198.4 150 62.0
Peaxi162Scf00007g01229 Petunia axillaris HOM05D001891 ORTHO05D005832 1.1e-48 198.0 160 58.8
vmacro12227 Vaccinium macrocarpon HOM05D001891 ORTHO05D005832 1.1e-48 198.0 159 59.1
Zm00001eb069580 Zea mays HOM05D001891 ORTHO05D005832 1.4e-48 197.6 152 61.8
Ah.15g093450 Amaranthus hybridus HOM05D001891 ORTHO05D005832 1.8e-48 197.2 144 64.6
Cfa014439 Carpinus fangiana HOM05D001891 ORTHO05D005832 1.8e-48 197.2 163 57.7
Lalb_Chr24g0393071 Lupinus albus HOM05D001891 ORTHO05D005832 1.8e-48 197.2 163 58.9
CSS0020073 Camellia sinensis var. sinensis HOM05D001891 ORTHO05D005832 2.4e-48 196.8 159 61.0
Migut.M00395 Erythranthe guttata HOM05D001891 ORTHO05D005832 2.4e-48 196.8 158 59.5
HPP92_009396 Vanilla planifolia HOM05D001891 ORTHO05D005832 2.4e-48 196.8 163 58.9
CAN.G921.8 Capsicum annuum HOM05D001891 ORTHO05D005832 5.4e-48 195.7 160 59.4
Eucgr.K00822 Eucalyptus grandis HOM05D001891 ORTHO05D005832 5.4e-48 195.7 150 61.3
SalBow7G4184 Salvia bowleyana HOM05D001891 ORTHO05D005832 5.4e-48 195.7 163 57.1
Sopen07g026180 Solanum pennellii HOM05D001891 ORTHO05D005832 5.4e-48 195.7 160 59.4
unitig_26.g9659 Utricularia gibba HOM05D001891 ORTHO05D005832 5.4e-48 195.7 153 60.8
Nitab4.5_0001176g0150 Nicotiana tabacum HOM05D001891 ORTHO05D005832 9.2e-48 194.9 160 59.4
Solyc07g052570.4 Solanum lycopersicum HOM05D001891 ORTHO05D005832 9.2e-48 194.9 160 59.4
Ciclev10015025m.g Citrus clementina HOM05D001891 ORTHO05D005832 1.6e-47 194.1 161 58.4
ECA238G0562 Erigeron canadensis HOM05D001891 ORTHO05D005832 1.6e-47 194.1 167 53.3
arahy.Tifrunner.gnm1.ann1.XAPR04 Arachis hypogaea HOM05D001891 ORTHO05D005832 2.0e-47 193.7 163 57.7
Haze_12897 Corylus avellana HOM05D001891 ORTHO05D005832 2.0e-47 193.7 163 57.1
Lj8A122T61 Lonicera japonica HOM05D001891 ORTHO05D005832 2.0e-47 193.7 161 55.9
Nn1g03668 Nelumbo nucifera HOM05D001891 ORTHO05D005832 2.0e-47 193.7 143 61.5
TPR.G4158 Trifolium pratense HOM05D001891 ORTHO05D005832 2.7e-47 193.4 163 56.4
Eucgr.K00839 Eucalyptus grandis HOM05D001891 ORTHO05D005832 3.5e-47 193.0 150 60.7
Oeu041941.2 Olea europaea HOM05D001891 ORTHO05D005832 4.5e-47 192.6 163 55.8
PSO541G2722 Papaver somniferum HOM05D001891 ORTHO05D005832 7.7e-47 191.8 143 62.2
ATR0804G013 Amborella trichopoda HOM05D001891 ORTHO05D005832 1.0e-46 191.4 162 58.6
Os04g0629100 Oryza sativa ssp. japonica HOM05D001891 ORTHO05D005832 1.0e-46 191.4 144 61.8
RcHm_v2.0_Chr2g0160071 Rosa chinensis HOM05D001891 ORTHO05D005832 1.0e-46 191.4 160 56.9
Dinv39687 Davidia involucrata HOM05D001891 ORTHO05D005832 1.3e-46 191.0 163 55.8
Medtr2g088820 Medicago truncatula HOM05D001891 ORTHO05D005832 1.3e-46 191.0 163 55.8
arahy.Tifrunner.gnm1.ann1.IG5XIH Arachis hypogaea HOM05D001891 ORTHO05D005832 1.7e-46 190.7 163 57.1
Aqoxy4G02100 Aquilegia oxysepala HOM05D001891 ORTHO05D005832 2.3e-46 190.3 163 55.2
Thhalv10020639m.g Eutrema salsugineum HOM05D001891 ORTHO05D005832 2.3e-46 190.3 142 60.6
Psat5g265280 Pisum sativum HOM05D001891 ORTHO05D005832 2.3e-46 190.3 163 55.2
Sp3g19820 Schrenkiella parvula HOM05D001891 ORTHO05D005832 2.3e-46 190.3 157 58.0
Aqoxy4G02096 Aquilegia oxysepala HOM05D001891 ORTHO05D005832 2.9e-46 189.9 161 55.9
Cc05_g05050 Coffea canephora HOM05D001891 ORTHO05D005832 3.8e-46 189.5 163 57.7
MD09G1105100 Malus domestica HOM05D001891 ORTHO05D005832 5.0e-46 189.1 161 55.3
A05p26920 Brassica napus HOM05D001891 ORTHO05D005832 6.6e-46 188.7 157 57.3
BraA05t21572Z Brassica rapa HOM05D001891 ORTHO05D005832 6.6e-46 188.7 157 57.3
Phvul.005G113700 Phaseolus vulgaris HOM05D001891 ORTHO05D005832 6.6e-46 188.7 163 56.4
FAN09G1075 Fragaria x ananassa HOM05D001891 ORTHO05D005832 8.6e-46 188.3 160 55.6
VMungo1080G1248 Vigna mungo HOM05D001891 ORTHO05D005832 8.6e-46 188.3 128 66.4
AT3G21820 Arabidopsis thaliana HOM05D001891 ORTHO05D005832 1.1e-45 188.0 157 57.3
BcaB06g26287 Brassica carinata HOM05D001891 ORTHO05D005832 1.1e-45 188.0 155 58.7
Duzib052G0092 Durio zibethinus HOM05D001891 ORTHO05D005832 1.1e-45 188.0 128 64.8
BcaC05g28122 Brassica carinata HOM05D001891 ORTHO05D005832 1.5e-45 187.6 142 59.9
C05p41560 Brassica napus HOM05D001891 ORTHO05D005832 1.5e-45 187.6 142 59.9
BolC5t32893H Brassica oleracea HOM05D001891 ORTHO05D005832 1.5e-45 187.6 142 59.9
FAN14G5299 Fragaria x ananassa HOM05D001891 ORTHO05D005832 1.5e-45 187.6 160 55.6
Lj3g0012140 Lotus japonicus HOM05D001891 ORTHO05D005832 1.5e-45 187.6 163 54.6
Potri.017G038700 Populus trichocarpa HOM05D001891 ORTHO05D005832 1.5e-45 187.6 151 57.6
THA.LOC104821752 Tarenaya hassleriana HOM05D001891 ORTHO05D005832 1.5e-45 187.6 145 60.0
FAN02G0497 Fragaria x ananassa HOM05D001891 ORTHO05D005832 1.9e-45 187.2 160 55.6
Gohir.A01G013300 Gossypium hirsutum HOM05D001891 ORTHO05D005832 1.9e-45 187.2 128 65.6
Gorai.002G016300 Gossypium raimondii HOM05D001891 ORTHO05D005832 1.9e-45 187.2 128 65.6
Manes.13G073100 Manihot esculenta HOM05D001891 ORTHO05D005832 2.5e-45 186.8 163 55.8
FvH4_6g43540 Fragaria vesca HOM05D001891 ORTHO05D005832 3.3e-45 186.4 160 55.0
Atru.chr6.3148 Acer truncatum HOM05D001891 ORTHO05D005832 4.3e-45 186.0 130 65.4
AL3G35970 Arabidopsis lyrata HOM05D001891 ORTHO05D005832 4.3e-45 186.0 157 57.3
Gohir.D01G014600 Gossypium hirsutum HOM05D001891 ORTHO05D005832 4.3e-45 186.0 128 65.6
EL10Ac7g17313 Beta vulgaris HOM05D001891 ORTHO05D005832 5.6e-45 185.7 128 66.4
PGR142G2396 Punica granatum HOM05D001891 ORTHO05D005832 5.6e-45 185.7 142 61.3
Carub.0003s2190 Capsella rubella HOM05D001891 ORTHO05D005832 7.3e-45 185.3 157 56.7
HanXRQChr10g0297501 Helianthus annuus HOM05D001891 ORTHO05D005832 9.5e-45 184.9 143 58.0
FAN05G1073 Fragaria x ananassa HOM05D001891 ORTHO05D005832 1.2e-44 184.5 128 64.8
Prupe.3G220400 Prunus persica HOM05D001891 ORTHO05D005832 1.2e-44 184.5 161 56.5
QL08p033823 Quercus lobata HOM05D001891 ORTHO05D005832 1.6e-44 184.1 169 53.8
SMO347G0022 Selaginella moellendorffii HOM05D001891 ORTHO05D005832 2.8e-44 183.3 152 55.9
CARHR097810 Cardamine hirsuta HOM05D001891 ORTHO05D005832 3.6e-44 183.0 157 55.4
TWI18G0733 Tripterygium wilfordii HOM05D001891 ORTHO05D005832 3.6e-44 183.0 162 53.7
Aa31LG8G8410 Aethionema arabicum HOM05D001891 ORTHO05D005832 4.7e-44 182.6 128 64.1
Mapoly0057s0093 Marchantia polymorpha HOM05D001891 ORTHO05D005832 1.4e-43 181.0 152 56.6
Cpa.g.sc8.235 Carica papaya HOM05D001891 ORTHO05D005832 1.8e-43 180.6 133 63.2
Eucgr.K00819 Eucalyptus grandis HOM05D001891 ORTHO05D005832 8.9e-43 178.3 162 53.1
Sabra17G0025700 Salix brachista HOM05D001891 ORTHO05D005832 1.2e-42 177.9 151 55.6
Thecc.02G162300 Theobroma cacao HOM05D001891 ORTHO05D005832 1.2e-42 177.9 128 61.7
Sed0014701 Sechium edule HOM05D001891 ORTHO05D005832 1.5e-42 177.6 163 52.1
GSVIVG01030624001 Vitis vinifera HOM05D001891 ORTHO05D005832 1.5e-42 177.6 126 62.7
Glyma.12G195700 Glycine max HOM05D001891 ORTHO05D005832 2.0e-42 177.2 130 63.8
DCAR_012956 Daucus carota HOM05D001891 ORTHO05D005832 3.4e-42 176.4 126 62.7
PGSC0003DMG400026174 Solanum tuberosum HOM05D001891 ORTHO05D005832 7.5e-42 175.3 117 70.1
Actinidia12502 Actinidia chinensis HOM05D001891 ORTHO05D005832 1.3e-41 174.5 155 57.4
CANSAT64G2761 Cannabis sativa HOM05D001891 ORTHO05D005832 2.2e-41 173.7 161 52.8
CsaV3_2G035180 Cucumis sativus L. HOM05D001891 ORTHO05D005832 3.7e-41 172.9 128 60.2
Hund01107 Selenicereus undatus HOM05D001891 ORTHO05D005832 1.1e-40 171.4 136 58.8
MELO3C019236.2 Cucumis melo HOM05D001891 ORTHO05D005832 1.4e-40 171.0 128 60.2
Psat0s4720g0040 Pisum sativum HOM05D001891 ORTHO05D005832 7.0e-40 168.7 117 65.0
HPP92_009391 Vanilla planifolia HOM05D001891 ORTHO05D005832 1.3e-38 164.5 143 55.9
SMO167G0005 Selaginella moellendorffii HOM05D001891 ORTHO05D005832 3.0e-38 163.3 136 55.1
Rhsim06G0158100 Rhododendron simsii HOM05D001891 ORTHO05D005832 1.2e-36 157.9 159 50.9
COL.COLO4_12984 Corchorus olitorius HOM05D001891 ORTHO05D005832 2.0e-34 150.6 166 47.6
ClCG02G008450 Citrullus lanatus HOM05D001891 ORTHO05D005832 1.9e-32 144.1 137 51.1
Atru.chr8.690 Acer truncatum HOM05D001891 ORTHO05D005832 7.8e-31 138.7 108 60.2
MBI18_g41217_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 1.2e-26 124.8 85 72.9
Cre01.g041100 Chlamydomonas reinhardtii HOM05D001891 ORTHO05D005832 1.3e-25 121.3 123 47.2
Psat6g077080 Pisum sativum HOM05D001891 ORTHO05D005832 1.2e-23 114.8 77 67.5
Psat6g077120 Pisum sativum HOM05D001891 ORTHO05D005832 1.2e-23 114.8 77 67.5
MCO06G294 Micromonas commoda HOM05D001891 ORTHO05D005832 1.6e-20 104.4 144 38.9
MBI18_g07895_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 1.3e-17 94.7 115 40.9
SGA_v2.0_scaffold70G23419 Striga asiatica HOM05D001891 ORTHO05D005832 2.2e-17 94.0 163 34.4
Glyma.13G306800 Glycine max HOM05D001891 ORTHO05D005832 4.9e-17 92.8 64 64.1
SEGI_11602 Sequoiadendron giganteum HOM05D006629 ORTHO05D008430 1.6e-15 87.8 58 72.4
SEGI_23999 Sequoiadendron giganteum HOM05D006629 ORTHO05D008430 1.6e-15 87.8 58 72.4
Eucgr.K00824 Eucalyptus grandis HOM05D001891 ORTHO05D005832 2.1e-15 87.4 140 37.9
Nitab4.5_0005894g0040 Nicotiana tabacum HOM05D001891 ORTHO05D005832 2.1e-15 87.4 132 36.4
SEGI_16808 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 1.3e-14 84.7 57 71.9
AL3G35980 Arabidopsis lyrata HOM05D001891 ORTHO05D005832 6.6e-14 82.4 88 45.5
CDE01G0775 Ceratophyllum demersum HOM05D001891 ORTHO05D005832 1.2e-12 78.2 162 27.8
MBI02_g41952_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 4.7e-12 76.3 52 65.4
Actinidia32078 Actinidia chinensis HOM05D001891 ORTHO05D005832 1.4e-11 74.7 47 70.2
Eucgr.K00821 Eucalyptus grandis HOM05D001891 ORTHO05D005832 1.4e-11 74.7 67 55.2
arahy.Tifrunner.gnm1.ann1.2VZW82 Arachis hypogaea HOM05D001891 ORTHO05D005832 2.4e-11 73.9 48 68.8
Eucgr.K00818 Eucalyptus grandis HOM05D001891 ORTHO05D005832 2.0e-10 70.9 47 66.0
arahy.Tifrunner.gnm1.ann1.R1IBZY Arachis hypogaea HOM05D001891 ORTHO05D005832 3.4e-10 70.1 47 68.1
MBI01_g06556_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 4.4e-10 69.7 60 58.3
AUR62040522 Chenopodium quinoa HOM05D001891 ORTHO05D005832 2.2e-09 67.4 68 44.1
arahy.Tifrunner.gnm1.ann1.I3MG1X Arachis hypogaea HOM05D001891 ORTHO05D005832 3.8e-09 66.6 42 71.4
AL7G32320 Arabidopsis lyrata HOM05D001891 ORTHO05D005832 1.1e-08 65.1 47 63.8
arahy.Tifrunner.gnm1.ann1.62D34N Arachis hypogaea HOM05D001891 ORTHO05D005832 1.4e-08 64.7 46 65.2
AL5G18570 Arabidopsis lyrata HOM05D001891 ORTHO05D005832 7.1e-08 62.4 46 50.0
SEGI_28307 Sequoiadendron giganteum HOM05D003185 ORTHO05D007711 1.2e-07 61.6 48 62.5
AUR62040523 Chenopodium quinoa HOM05D001891 ORTHO05D005832 2.7e-07 60.5 46 58.7
Sc12g0002380 Simmondsia chinensis HOM05D001891 ORTHO05D005832 2.7e-07 60.5 47 46.8
arahy.Tifrunner.gnm1.ann1.FTMH30 Arachis hypogaea HOM05D001891 ORTHO05D005832 3.5e-07 60.1 40 70.0
SEGI_07348 Sequoiadendron giganteum HOM05D000331 ORTHO05D011291 3.5e-07 60.1 65 46.2
MBI01_g08957_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 2.3e-06 57.4 57 47.4


User provided reference genes

Program Settings