Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_19955 Sequoiadendron giganteum HOM05D004859 ORTHO05D005807 1.1e-77 293.5 181 100.0
Gohir.A05G391600 Gossypium hirsutum HOM05D004859 ORTHO05D005807 1.1e-45 187.2 105 81.9
Gohir.A13G154200 Gossypium hirsutum HOM05D004859 ORTHO05D005807 9.5e-45 184.1 105 81.0
Gohir.D13G158900 Gossypium hirsutum HOM05D004859 ORTHO05D005807 9.5e-45 184.1 105 81.0
Gorai.013G179600 Gossypium raimondii HOM05D004859 ORTHO05D005807 9.5e-45 184.1 105 81.0
Gohir.D08G245400 Gossypium hirsutum HOM05D004859 ORTHO05D005807 1.2e-44 183.7 105 79.0
Gorai.004G261900 Gossypium raimondii HOM05D004859 ORTHO05D005807 1.2e-44 183.7 105 79.0
Glyma.18G241900 Glycine max HOM05D004859 ORTHO05D005807 1.6e-44 183.3 105 81.0
ClCG03G010710 Citrullus lanatus HOM05D004859 ORTHO05D005807 2.8e-44 182.6 106 81.1
Gohir.D04G025700 Gossypium hirsutum HOM05D004859 ORTHO05D005807 2.8e-44 182.6 105 80.0
Gorai.012G028300 Gossypium raimondii HOM05D004859 ORTHO05D005807 2.8e-44 182.6 105 80.0
TWI18G1000 Tripterygium wilfordii HOM05D004859 ORTHO05D005807 3.6e-44 182.2 105 81.0
TAR629G2726 Trochodendron aralioides HOM05D004859 ORTHO05D005807 3.6e-44 182.2 105 79.0
THA.LOC104827174 Tarenaya hassleriana HOM05D004859 ORTHO05D005807 4.7e-44 181.8 105 80.0
Aa31LG5G13260 Aethionema arabicum HOM05D004859 ORTHO05D005807 6.1e-44 181.4 107 80.4
CSS0011817 Camellia sinensis var. sinensis HOM05D004859 ORTHO05D005807 6.1e-44 181.4 104 80.8
ECA238G2179 Erigeron canadensis HOM05D004859 ORTHO05D005807 6.1e-44 181.4 106 82.1
Lalb_Chr03g0038491 Lupinus albus HOM05D004859 ORTHO05D005807 8.0e-44 181.0 106 81.1
THA.LOC104802953 Tarenaya hassleriana HOM05D004859 ORTHO05D005807 8.0e-44 181.0 105 80.0
Glyma.09G250600 Glycine max HOM05D004859 ORTHO05D005807 1.0e-43 180.6 106 80.2
CANSAT54G1839 Cannabis sativa HOM05D004859 ORTHO05D005807 1.8e-43 179.9 105 81.0
Sc06g0005050 Simmondsia chinensis HOM05D004859 ORTHO05D005807 1.8e-43 179.9 105 79.0
Lj1g0018632 Lotus japonicus HOM05D004859 ORTHO05D005807 3.0e-43 179.1 105 80.0
Potri.019G053500 Populus trichocarpa HOM05D004859 ORTHO05D005807 3.0e-43 179.1 103 80.6
Sc16g0010390 Simmondsia chinensis HOM05D004859 ORTHO05D005807 4.0e-43 178.7 105 79.0
Potri.013G086400 Populus trichocarpa HOM05D004859 ORTHO05D005807 5.2e-43 178.3 105 78.1
Duzib128G0817 Durio zibethinus HOM05D004859 ORTHO05D005807 6.8e-43 177.9 105 77.1
HanXRQChr11g0333601 Helianthus annuus HOM05D004859 ORTHO05D005807 8.9e-43 177.6 106 82.1
Duzib177G0866 Durio zibethinus HOM05D004859 ORTHO05D005807 1.2e-42 177.2 105 77.1
Gohir.A08G225000 Gossypium hirsutum HOM05D004859 ORTHO05D005807 1.2e-42 177.2 102 77.5
Sp3g01820 Schrenkiella parvula HOM05D004859 ORTHO05D005807 1.5e-42 176.8 106 80.2
Carub.0003s0189 Capsella rubella HOM05D004859 ORTHO05D005807 2.0e-42 176.4 106 80.2
Nn7g37400 Nelumbo nucifera HOM05D004859 ORTHO05D005807 2.0e-42 176.4 105 78.1
VMungo1383G1359 Vigna mungo HOM05D004859 ORTHO05D005807 2.0e-42 176.4 105 79.0
Aqoxy7G00303 Aquilegia oxysepala HOM05D004859 ORTHO05D005807 2.6e-42 176.0 107 76.6
MELO3C010059.2 Cucumis melo HOM05D004859 ORTHO05D005807 2.6e-42 176.0 106 76.4
ECA233G5366 Erigeron canadensis HOM05D004859 ORTHO05D005807 2.6e-42 176.0 106 78.3
Hma1.2p1_0171F.1_g075510 Hydrangea macrophylla HOM05D004859 ORTHO05D005807 2.6e-42 176.0 105 77.1
PGR031G2676 Punica granatum HOM05D004859 ORTHO05D005807 2.6e-42 176.0 105 79.0
Lalb_Chr01g0020391 Lupinus albus HOM05D004859 ORTHO05D005807 3.4e-42 175.6 106 78.3
Sed0011478 Sechium edule HOM05D004859 ORTHO05D005807 3.4e-42 175.6 106 75.5
AL3G12200 Arabidopsis lyrata HOM05D004859 ORTHO05D005807 4.4e-42 175.3 106 80.2
PSO675G0300 Papaver somniferum HOM05D004859 ORTHO05D005807 4.4e-42 175.3 107 77.6
PSO675G8596 Papaver somniferum HOM05D004859 ORTHO05D005807 4.4e-42 175.3 107 77.6
Ca_07986_v3 Cicer arietinum L. HOM05D004859 ORTHO05D005807 5.7e-42 174.9 105 78.1
Lsat_1_v5_gn_2_18260 Lactuca sativa HOM05D004859 ORTHO05D005807 5.7e-42 174.9 107 79.4
CiPaw.07G080000 Carya illinoinensis HOM05D004859 ORTHO05D005807 7.5e-42 174.5 105 78.1
COL.COLO4_19821 Corchorus olitorius HOM05D004859 ORTHO05D005807 7.5e-42 174.5 107 79.4
Prupe.6G361200 Prunus persica HOM05D004859 ORTHO05D005807 7.5e-42 174.5 116 73.3
Thecc.05G199300 Theobroma cacao HOM05D004859 ORTHO05D005807 7.5e-42 174.5 105 78.1
BcaC05g30507 Brassica carinata HOM05D004859 ORTHO05D005807 1.3e-41 173.7 106 78.3
MD12G1260500 Malus domestica HOM05D004859 ORTHO05D005807 1.3e-41 173.7 111 73.9
Manes.12G005900 Manihot esculenta HOM05D004859 ORTHO05D005807 1.3e-41 173.7 105 75.2
QL01p048380 Quercus lobata HOM05D004859 ORTHO05D005807 1.3e-41 173.7 104 76.9
A02p03550 Brassica napus HOM05D004859 ORTHO05D005807 1.7e-41 173.3 106 81.1
BraA02t05326Z Brassica rapa HOM05D004859 ORTHO05D005807 1.7e-41 173.3 106 81.1
CARHR076800 Cardamine hirsuta HOM05D004859 ORTHO05D005807 1.7e-41 173.3 106 78.3
CDE12G0839 Ceratophyllum demersum HOM05D004859 ORTHO05D005807 1.7e-41 173.3 105 78.1
Manes.13G005600 Manihot esculenta HOM05D004859 ORTHO05D005807 1.7e-41 173.3 105 76.2
BcaC05g30510 Brassica carinata HOM05D004859 ORTHO05D005807 2.2e-41 172.9 106 77.4
C09p75910 Brassica napus HOM05D004859 ORTHO05D005807 2.2e-41 172.9 106 77.4
Ah.06g195490 Amaranthus hybridus HOM05D004859 ORTHO05D005807 2.8e-41 172.6 105 75.2
A10p22730 Brassica napus HOM05D004859 ORTHO05D005807 2.8e-41 172.6 106 81.1
BraA10t44336Z Brassica rapa HOM05D004859 ORTHO05D005807 2.8e-41 172.6 106 81.1
Ciclev10013411m.g Citrus clementina HOM05D004859 ORTHO05D005807 2.8e-41 172.6 106 78.3
CsaV3_1G044540 Cucumis sativus L. HOM05D004859 ORTHO05D005807 2.8e-41 172.6 106 75.5
RcHm_v2.0_Chr3g0447891 Rosa chinensis HOM05D004859 ORTHO05D005807 2.8e-41 172.6 106 75.5
BcaB08g36850 Brassica carinata HOM05D004859 ORTHO05D005807 3.7e-41 172.2 106 80.2
BcaC04g18876 Brassica carinata HOM05D004859 ORTHO05D005807 3.7e-41 172.2 106 80.2
C09p60710 Brassica napus HOM05D004859 ORTHO05D005807 3.7e-41 172.2 106 80.2
BolC9t58902H Brassica oleracea HOM05D004859 ORTHO05D005807 3.7e-41 172.2 106 80.2
Cc09_g03620 Coffea canephora HOM05D004859 ORTHO05D005807 3.7e-41 172.2 111 73.0
MBI18_g38869_MAGBIO Magnolia biondii HOM05D004859 ORTHO05D005807 3.7e-41 172.2 105 76.2
Phvul.008G054200 Phaseolus vulgaris HOM05D004859 ORTHO05D005807 3.7e-41 172.2 109 77.1
Sp6g27710 Schrenkiella parvula HOM05D004859 ORTHO05D005807 3.7e-41 172.2 106 80.2
TPR.G30708 Trifolium pratense HOM05D004859 ORTHO05D005807 3.7e-41 172.2 105 76.2
unitig_749.g13492 Utricularia gibba HOM05D004859 ORTHO05D005807 3.7e-41 172.2 105 77.1
MD04G1244600 Malus domestica HOM05D004859 ORTHO05D005807 4.9e-41 171.8 112 73.2
Oeu020252.1 Olea europaea HOM05D004859 ORTHO05D005807 4.9e-41 171.8 105 76.2
Atru.chr12.1788 Acer truncatum HOM05D004859 ORTHO05D005807 6.3e-41 171.4 107 78.5
AT3G02790 Arabidopsis thaliana HOM05D004859 ORTHO05D005807 6.3e-41 171.4 106 78.3
DCAR_024584 Daucus carota HOM05D004859 ORTHO05D005807 6.3e-41 171.4 107 73.8
Thhalv10015095m.g Eutrema salsugineum HOM05D004859 ORTHO05D005807 6.3e-41 171.4 106 79.2
Peaxi162Scf00344g00092 Petunia axillaris HOM05D004859 ORTHO05D005807 6.3e-41 171.4 107 77.6
Rhsim09G0129900 Rhododendron simsii HOM05D004859 ORTHO05D005807 6.3e-41 171.4 105 81.0
BolC5t35066H Brassica oleracea HOM05D004859 ORTHO05D005807 8.3e-41 171.0 106 77.4
Cpa.g.sc39.7 Carica papaya HOM05D004859 ORTHO05D005807 8.3e-41 171.0 105 75.2
Medtr7g079990 Medicago truncatula HOM05D004859 ORTHO05D005807 8.3e-41 171.0 107 76.6
Oeu062049.1 Olea europaea HOM05D004859 ORTHO05D005807 8.3e-41 171.0 105 74.3
BcaB01g04980 Brassica carinata HOM05D004859 ORTHO05D005807 1.1e-40 170.6 108 78.7
BolC3t13398H Brassica oleracea HOM05D004859 ORTHO05D005807 1.1e-40 170.6 108 78.7
Lsat_1_v5_gn_8_2360 Lactuca sativa HOM05D004859 ORTHO05D005807 1.1e-40 170.6 105 75.2
SalBow6G1022 Salvia bowleyana HOM05D004859 ORTHO05D005807 1.4e-40 170.2 105 76.2
Cfa006265 Carpinus fangiana HOM05D004859 ORTHO05D005807 1.8e-40 169.9 105 76.2
Psat3g138280 Pisum sativum HOM05D004859 ORTHO05D005807 1.8e-40 169.9 107 76.6
TWI36G0708 Tripterygium wilfordii HOM05D004859 ORTHO05D005807 1.8e-40 169.9 105 76.2
BcaC03g18492 Brassica carinata HOM05D004859 ORTHO05D005807 2.4e-40 169.5 105 76.2
A03p07800 Brassica napus HOM05D004859 ORTHO05D005807 3.1e-40 169.1 109 78.0
BolC2t06754H Brassica oleracea HOM05D004859 ORTHO05D005807 3.1e-40 169.1 106 79.2
BraA03t10107Z Brassica rapa HOM05D004859 ORTHO05D005807 3.1e-40 169.1 109 78.0
CARHR196760 Cardamine hirsuta HOM05D004859 ORTHO05D005807 3.1e-40 169.1 105 76.2
Sabra13G0077700 Salix brachista HOM05D004859 ORTHO05D005807 3.1e-40 169.1 97 83.5
EL10Ac4g09966 Beta vulgaris HOM05D004859 ORTHO05D005807 4.1e-40 168.7 100 78.0
Migut.F02136 Erythranthe guttata HOM05D004859 ORTHO05D005807 4.1e-40 168.7 105 74.3
FAN05G4796 Fragaria x ananassa HOM05D004859 ORTHO05D005807 4.1e-40 168.7 106 73.6
Nitab4.5_0001435g0020 Nicotiana tabacum HOM05D004859 ORTHO05D005807 7.0e-40 167.9 107 74.8
Aa31LG11G13190 Aethionema arabicum HOM05D004859 ORTHO05D005807 9.2e-40 167.5 105 78.1
ATR0568G125 Amborella trichopoda HOM05D004859 ORTHO05D005807 9.2e-40 167.5 107 76.6
CSS0045397 Camellia sinensis var. sinensis HOM05D004859 ORTHO05D005807 9.2e-40 167.5 107 77.6
CANSAT35G0417 Cannabis sativa HOM05D004859 ORTHO05D005807 9.2e-40 167.5 106 76.4
GSVIVG01019111001 Vitis vinifera HOM05D004859 ORTHO05D005807 9.2e-40 167.5 104 74.0
SHI13720 Sapria himalayana HOM05D004859 ORTHO05D005807 1.2e-39 167.2 104 73.1
DCAR_029983 Daucus carota HOM05D004859 ORTHO05D005807 1.6e-39 166.8 106 74.5
Solyc04g056350.1 Solanum lycopersicum HOM05D004859 ORTHO05D005807 1.6e-39 166.8 106 77.4
FvH4_6g00510 Fragaria vesca HOM05D004859 ORTHO05D005807 2.0e-39 166.4 108 71.3
Sopen04g025250 Solanum pennellii HOM05D004859 ORTHO05D005807 2.0e-39 166.4 106 76.4
CAN.G217.12 Capsicum annuum HOM05D004859 ORTHO05D005807 2.7e-39 166.0 106 75.5
FAN09G3430 Fragaria x ananassa HOM05D004859 ORTHO05D005807 2.7e-39 166.0 107 71.0
FAN14G1059 Fragaria x ananassa HOM05D004859 ORTHO05D005807 2.7e-39 166.0 107 71.0
HPP92_025926 Vanilla planifolia HOM05D004859 ORTHO05D005807 3.5e-39 165.6 103 73.8
Haze_04552 Corylus avellana HOM05D004859 ORTHO05D005807 4.5e-39 165.2 105 75.2
Nitab4.5_0000083g0160 Nicotiana tabacum HOM05D004859 ORTHO05D005807 4.5e-39 165.2 107 72.9
Pp3c9_1130 Physcomitrium patens HOM05D004859 ORTHO05D005807 4.5e-39 165.2 105 74.3
AL6G27410 Arabidopsis lyrata HOM05D004859 ORTHO05D005807 5.9e-39 164.9 105 74.3
AT5G16470 Arabidopsis thaliana HOM05D004859 ORTHO05D005807 5.9e-39 164.9 105 74.3
Carub.0006s1467 Capsella rubella HOM05D004859 ORTHO05D005807 5.9e-39 164.9 105 74.3
Eucgr.H01388 Eucalyptus grandis HOM05D004859 ORTHO05D005807 5.9e-39 164.9 110 73.6
PGSC0003DMG400007259 Solanum tuberosum HOM05D004859 ORTHO05D005807 1.0e-38 164.1 106 75.5
unitig_26.g9580 Utricularia gibba HOM05D000798 ORTHO05D000659 1.0e-38 164.1 106 73.6
AUR62000312 Chenopodium quinoa HOM05D004859 ORTHO05D005807 2.9e-38 162.5 105 74.3
Pp3c15_1090 Physcomitrium patens HOM05D004859 ORTHO05D005807 8.6e-38 161.0 105 72.4
Actinidia38902 Actinidia chinensis HOM05D004859 ORTHO05D005807 1.1e-37 160.6 99 76.8
Mapoly0153s0037 Marchantia polymorpha HOM05D004859 ORTHO05D005807 1.5e-37 160.2 107 72.0
Pp3c26_1250 Physcomitrium patens HOM05D004859 ORTHO05D005807 1.9e-37 159.8 106 72.6
AUR62006657 Chenopodium quinoa HOM05D004859 ORTHO05D005807 2.5e-37 159.5 105 74.3
HanXRQChr09g0244001 Helianthus annuus HOM05D004859 ORTHO05D005807 5.6e-37 158.3 106 74.5
Zm00001eb272650 Zea mays HOM05D004859 ORTHO05D005807 2.1e-36 156.4 109 70.6
SMO361G0285 Selaginella moellendorffii HOM05D004859 ORTHO05D005807 4.7e-36 155.2 106 71.7
Os06g0708600 Oryza sativa ssp. japonica HOM05D004859 ORTHO05D005807 6.1e-36 154.8 115 67.8
Zm00001eb227470 Zea mays HOM05D004859 ORTHO05D005807 8.9e-35 151.0 119 63.9
VMungo0464G0653 Vigna mungo HOM05D004859 ORTHO05D005807 5.2e-27 125.2 81 72.8
A05p44330 Brassica napus HOM05D004859 ORTHO05D005807 5.8e-26 121.7 69 79.7
BraA06t23289Z Brassica rapa HOM05D004859 ORTHO05D005807 5.8e-26 121.7 69 79.7
Cre09.g416500 Chlamydomonas reinhardtii HOM05D004859 ORTHO05D005807 7.8e-23 111.3 103 59.2
RcHm_v2.0_Chr1g0316641 Rosa chinensis HOM05D004859 ORTHO05D005807 1.1e-21 107.5 72 66.7
Nn1g09361 Nelumbo nucifera HOM05D004859 ORTHO05D005807 2.0e-18 96.7 52 88.5
PRCOL_00002520 Prasinoderma coloniale HOM05D004859 ORTHO05D005807 2.0e-18 96.7 89 55.1
Nn1g01054 Nelumbo nucifera HOM05D004859 ORTHO05D005807 1.1e-16 90.9 56 75.0
BcaB08g36851 Brassica carinata HOM05D004859 ORTHO05D005807 6.0e-15 85.1 106 52.8
AUR62006656 Chenopodium quinoa HOM05D004859 ORTHO05D005807 3.6e-12 75.9 84 48.8
SHI22764 Sapria himalayana HOM05D004859 ORTHO05D005807 1.5e-10 70.5 81 45.7
SHI07073 Sapria himalayana HOM05D004859 ORTHO05D005807 3.9e-06 55.8 77 44.2


User provided reference genes

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