Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_19563 Sequoiadendron giganteum HOM05D006809 ORTHO05D008609 8.2e-67 256.9 129 100.0
Mapoly0118s0024 Marchantia polymorpha HOM05D006809 ORTHO05D008609 7.3e-23 110.9 63 82.5
TAR629G2676 Trochodendron aralioides HOM05D006809 ORTHO05D008609 9.5e-23 110.5 71 77.5
Aqoxy3G03648 Aquilegia oxysepala HOM05D006809 ORTHO05D008609 4.7e-22 108.2 61 83.6
RcHm_v2.0_Chr7g0183371 Rosa chinensis HOM05D006809 ORTHO05D008609 8.0e-22 107.5 72 72.2
PSO017G0895 Papaver somniferum HOM05D006809 ORTHO05D008609 1.0e-21 107.1 71 77.5
PSO478G2035 Papaver somniferum HOM05D006809 ORTHO05D008609 1.0e-21 107.1 71 77.5
Nn4g23476 Nelumbo nucifera HOM05D006809 ORTHO05D008609 2.3e-21 105.9 66 78.8
FAN13G1268 Fragaria x ananassa HOM05D006809 ORTHO05D008609 4.0e-21 105.1 72 68.1
ATR0827G115 Amborella trichopoda HOM05D006809 ORTHO05D008609 6.8e-21 104.4 67 73.1
Cfa019358 Carpinus fangiana HOM05D006809 ORTHO05D008609 1.2e-20 103.6 66 77.3
Prupe.5G207700 Prunus persica HOM05D006809 ORTHO05D008609 1.2e-20 103.6 72 70.8
Ciclev10023968m.g Citrus clementina HOM05D006809 ORTHO05D008609 2.0e-20 102.8 66 74.2
DCAR_010163 Daucus carota HOM05D006809 ORTHO05D008609 2.0e-20 102.8 66 74.2
FvH4_5g13570 Fragaria vesca HOM05D006809 ORTHO05D008609 2.0e-20 102.8 72 66.7
FAN18G0725 Fragaria x ananassa HOM05D006809 ORTHO05D008609 2.0e-20 102.8 72 66.7
MSTRG.11330 Avicennia marina HOM05D006809 ORTHO05D008609 2.6e-20 102.4 62 77.4
Rhsim08G0143500 Rhododendron simsii HOM05D006809 ORTHO05D008609 2.6e-20 102.4 92 62.0
CiPaw.12G009200 Carya illinoinensis HOM05D006809 ORTHO05D008609 3.4e-20 102.1 61 80.3
Gohir.A07G067300 Gossypium hirsutum HOM05D006809 ORTHO05D008609 3.4e-20 102.1 71 70.4
Manes.14G087700 Manihot esculenta HOM05D006809 ORTHO05D008609 3.4e-20 102.1 71 70.4
PGSC0003DMG400023259 Solanum tuberosum HOM05D006809 ORTHO05D008609 3.4e-20 102.1 62 79.0
GSVIVG01008127001 Vitis vinifera HOM05D006809 ORTHO05D008609 3.4e-20 102.1 71 69.0
CSS0020904 Camellia sinensis var. sinensis HOM05D006809 ORTHO05D008609 4.4e-20 101.7 70 71.4
CSS0043969 Camellia sinensis var. sinensis HOM05D006809 ORTHO05D008609 4.4e-20 101.7 70 71.4
Dinv22761 Davidia involucrata HOM05D006809 ORTHO05D008609 5.7e-20 101.3 71 69.0
SGA_v2.0_scaffold313G48281 Striga asiatica HOM05D006809 ORTHO05D008609 5.7e-20 101.3 69 71.0
Thecc.03G104800 Theobroma cacao HOM05D006809 ORTHO05D008609 5.7e-20 101.3 61 77.0
Thecc.K0005900 Theobroma cacao HOM05D006809 ORTHO05D008609 5.7e-20 101.3 61 77.0
Lj5A134T75 Lonicera japonica HOM05D006809 ORTHO05D008609 7.5e-20 100.9 71 67.6
Pp3c18_4200 Physcomitrium patens HOM05D006809 ORTHO05D008609 7.5e-20 100.9 63 74.6
CANSAT11G1370 Cannabis sativa HOM05D006809 ORTHO05D008609 9.8e-20 100.5 58 79.3
SalBow5G3990 Salvia bowleyana HOM05D006809 ORTHO05D008609 9.8e-20 100.5 67 71.6
vmacro16181 Vaccinium macrocarpon HOM05D006809 ORTHO05D008609 9.8e-20 100.5 71 69.0
Cpa.g.sc94.80 Carica papaya HOM05D006809 ORTHO05D008609 1.3e-19 100.1 61 75.4
Duzib205G0618 Durio zibethinus HOM05D006809 ORTHO05D008609 1.3e-19 100.1 61 77.0
QL10p020149 Quercus lobata HOM05D006809 ORTHO05D008609 1.3e-19 100.1 61 77.0
Sopen12g018840 Solanum pennellii HOM05D006809 ORTHO05D008609 1.3e-19 100.1 68 70.6
AagrBONN_evm.TU.Sc2ySwM_117.1929 Anthoceros agrestis HOM05D006809 ORTHO05D008609 1.7e-19 99.8 63 79.4
COL.COLO4_24315 Corchorus olitorius HOM05D006809 ORTHO05D008609 2.2e-19 99.4 61 75.4
Oeu014424.1 Olea europaea HOM05D006809 ORTHO05D008609 2.2e-19 99.4 67 70.1
Haze_07749 Corylus avellana HOM05D006809 ORTHO05D008609 2.9e-19 99.0 66 74.2
Hma1.2p1_0060F.1_g032870 Hydrangea macrophylla HOM05D006809 ORTHO05D008609 2.9e-19 99.0 71 67.6
Hma1.2p1_0060F.1_g032880 Hydrangea macrophylla HOM05D006809 ORTHO05D008609 2.9e-19 99.0 71 67.6
vmacro17626 Vaccinium macrocarpon HOM05D006809 ORTHO05D008609 2.9e-19 99.0 71 67.6
Gohir.D07G071900 Gossypium hirsutum HOM05D006809 ORTHO05D008609 3.7e-19 98.6 61 77.0
Gorai.001G076000 Gossypium raimondii HOM05D006809 ORTHO05D008609 3.7e-19 98.6 61 77.0
FAN08G0740 Fragaria x ananassa HOM05D006809 ORTHO05D008609 4.9e-19 98.2 66 68.2
Lj1g0027663 Lotus japonicus HOM05D006809 ORTHO05D008609 8.3e-19 97.4 61 73.8
Phvul.009G203000 Phaseolus vulgaris HOM05D006809 ORTHO05D008609 1.1e-18 97.1 66 71.2
Actinidia04809 Actinidia chinensis HOM05D006809 ORTHO05D008609 1.4e-18 96.7 61 73.8
HanXRQChr05g0154271 Helianthus annuus HOM05D006809 ORTHO05D008609 1.8e-18 96.3 67 70.1
Nitab4.5_0001723g0010 Nicotiana tabacum HOM05D006809 ORTHO05D008609 3.2e-18 95.5 63 69.8
Nitab4.5_0001797g0090 Nicotiana tabacum HOM05D006809 ORTHO05D008609 3.2e-18 95.5 63 69.8
Medtr2g060520 Medicago truncatula HOM05D006809 ORTHO05D008609 4.1e-18 95.1 61 72.1
TWI81G0697 Tripterygium wilfordii HOM05D006809 ORTHO05D008609 4.1e-18 95.1 61 73.8
VMungo1309G1606 Vigna mungo HOM05D006809 ORTHO05D008609 5.4e-18 94.7 66 68.2
Glyma.06G205000 Glycine max HOM05D006809 ORTHO05D008609 7.0e-18 94.4 66 66.7
AUR62039658 Chenopodium quinoa HOM05D006809 ORTHO05D008609 9.2e-18 94.0 56 80.4
MELO3C002045.2 Cucumis melo HOM05D006809 ORTHO05D008609 9.2e-18 94.0 57 71.9
ECA246G1387 Erigeron canadensis HOM05D006809 ORTHO05D008609 9.2e-18 94.0 67 68.7
Eucgr.K02539 Eucalyptus grandis HOM05D006809 ORTHO05D008609 9.2e-18 94.0 56 76.8
ClCG04G011640 Citrullus lanatus HOM05D006809 ORTHO05D000432 1.2e-17 93.6 57 73.7
Sc12g0007330 Simmondsia chinensis HOM05D006809 ORTHO05D008609 1.2e-17 93.6 67 67.2
Os03g0754900 Oryza sativa ssp. japonica HOM05D006809 ORTHO05D008609 1.6e-17 93.2 64 67.2
Sed0027469 Sechium edule HOM05D006809 ORTHO05D008609 1.6e-17 93.2 61 68.9
Ca_02916_v3 Cicer arietinum L. HOM05D006809 ORTHO05D008609 2.0e-17 92.8 61 70.5
Cc11_g04700 Coffea canephora HOM05D006809 ORTHO05D008609 2.0e-17 92.8 57 71.9
CsaV3_1G006160 Cucumis sativus L. HOM05D006809 ORTHO05D008609 2.0e-17 92.8 57 71.9
Lalb_Chr07g0189231 Lupinus albus HOM05D006809 ORTHO05D008609 2.7e-17 92.4 61 70.5
Hund09945 Selenicereus undatus HOM05D006809 ORTHO05D008609 2.7e-17 92.4 71 67.6
EL10Ac5g11165 Beta vulgaris HOM05D006809 ORTHO05D008609 3.5e-17 92.0 60 75.0
AUR62032115 Chenopodium quinoa HOM05D006809 ORTHO05D008609 3.5e-17 92.0 67 68.7
Psat1g128360 Pisum sativum HOM05D006809 ORTHO05D008609 3.5e-17 92.0 61 70.5
Lsat_1_v5_gn_5_23620 Lactuca sativa HOM05D006809 ORTHO05D008609 4.6e-17 91.7 67 67.2
Ah.11g047550 Amaranthus hybridus HOM05D006809 ORTHO05D008609 7.8e-17 90.9 67 65.7
CARHR274620 Cardamine hirsuta HOM05D006809 ORTHO05D008609 1.0e-16 90.5 69 62.3
Zm00001eb057630 Zea mays HOM05D006809 ORTHO05D008609 1.0e-16 90.5 64 65.6
Thhalv10004278m.g Eutrema salsugineum HOM05D006809 ORTHO05D008609 1.3e-16 90.1 62 69.4
Sp2g24250 Schrenkiella parvula HOM05D006809 ORTHO05D008609 1.3e-16 90.1 62 69.4
BcaC06g33207 Brassica carinata HOM05D006809 ORTHO05D008609 3.0e-16 89.0 62 69.4
PGR044G2265 Punica granatum HOM05D006809 ORTHO05D008609 3.0e-16 89.0 56 73.2
Carub.0008s2163 Capsella rubella HOM05D006809 ORTHO05D008609 5.0e-16 88.2 62 66.1
MD06G1203600 Malus domestica HOM05D006809 ORTHO05D008609 5.0e-16 88.2 72 65.3
BcaNung06908 Brassica carinata HOM05D006809 ORTHO05D008609 6.6e-16 87.8 62 67.7
C07p44720 Brassica napus HOM05D006809 ORTHO05D008609 6.6e-16 87.8 62 67.7
BolC7t44995H Brassica oleracea HOM05D006809 ORTHO05D008609 6.6e-16 87.8 62 67.7
AL8G37560 Arabidopsis lyrata HOM05D006809 ORTHO05D008609 8.6e-16 87.4 62 66.1
A03p46650 Brassica napus HOM05D006809 ORTHO05D008609 8.6e-16 87.4 62 67.7
BraA03t13789Z Brassica rapa HOM05D006809 ORTHO05D008609 8.6e-16 87.4 62 67.7
AT5G60940 Arabidopsis thaliana HOM05D006809 ORTHO05D008609 1.1e-15 87.0 62 66.1
arahy.Tifrunner.gnm1.ann1.23QZVI Arachis hypogaea HOM05D006809 ORTHO05D008609 1.5e-15 86.7 59 67.8
Aa31LG11G2360 Aethionema arabicum HOM05D006809 ORTHO05D008609 3.3e-15 85.5 62 64.5
CBR_g41384 Chara braunii HOM05D006809 ORTHO05D000002 7.3e-15 84.3 55 72.7
TPR.G23013 Trifolium pratense HOM05D007385 ORTHO05D009349 2.1e-14 82.8 61 63.9
MD14G1214500 Malus domestica HOM05D006809 ORTHO05D008609 4.0e-13 78.6 72 61.1
SMO358G0618 Selaginella moellendorffii HOM05D006809 ORTHO05D008609 2.0e-12 76.3 47 74.5
Glyma.04G160301 Glycine max HOM05D006809 ORTHO05D008609 1.7e-11 73.2 44 72.7
Medtr2g061440 Medicago truncatula HOM05D002527 ORTHO05D001267 1.6e-09 66.6 40 70.0


User provided reference genes

Program Settings