Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_19344 Sequoiadendron giganteum HOM05D004952 ORTHO05D006131 0.0e+00 1598.2 790 100.0
SEGI_10220 Sequoiadendron giganteum HOM05D004952 ORTHO05D006131 2.4e-294 1015.4 503 100.0
TAR381G0370 Trochodendron aralioides HOM05D004952 ORTHO05D006131 1.9e-142 510.8 756 42.9
Prupe.1G389900 Prunus persica HOM05D004952 ORTHO05D006131 1.3e-133 481.5 767 41.1
ATR0706G013 Amborella trichopoda HOM05D004952 ORTHO05D006131 2.4e-132 477.2 770 42.1
Nn6g34572 Nelumbo nucifera HOM05D004952 ORTHO05D006131 2.0e-131 474.2 764 41.0
Atru.chr13.612 Acer truncatum HOM05D004952 ORTHO05D006131 6.4e-130 469.2 761 41.0
MD15G1036000 Malus domestica HOM05D004952 ORTHO05D006131 1.4e-129 468.0 758 40.5
FAN15G3424 Fragaria x ananassa HOM05D004952 ORTHO05D006131 6.0e-128 462.6 760 40.7
TWI36G1022 Tripterygium wilfordii HOM05D004952 ORTHO05D006131 7.9e-128 462.2 783 40.1
Aqoxy6G00884 Aquilegia oxysepala HOM05D004952 ORTHO05D006131 3.0e-127 460.3 776 39.9
PSO063G1848 Papaver somniferum HOM05D004952 ORTHO05D006131 1.1e-126 458.4 764 40.1
FAN27G3039 Fragaria x ananassa HOM05D004952 ORTHO05D006131 1.9e-126 457.6 760 40.1
Lj4C49T7 Lonicera japonica HOM05D004952 ORTHO05D006131 1.9e-126 457.6 756 38.8
Rhsim13G0049200 Rhododendron simsii HOM05D004952 ORTHO05D006131 1.9e-126 457.6 761 40.6
Thecc.10G126500 Theobroma cacao HOM05D004952 ORTHO05D006131 1.9e-126 457.6 773 40.4
QL02p006188 Quercus lobata HOM05D004952 ORTHO05D006131 7.4e-126 455.7 763 42.1
Hma1.2p1_0260F.1_g104650 Hydrangea macrophylla HOM05D004952 ORTHO05D006131 1.3e-125 454.9 761 39.4
FvH4_2g40750 Fragaria vesca HOM05D004952 ORTHO05D006131 4.8e-125 453.0 761 40.1
Pp3c13_8820 Physcomitrium patens HOM05D004952 ORTHO05D006131 6.2e-125 452.6 803 38.5
Haze_17576 Corylus avellana HOM05D004952 ORTHO05D006131 1.1e-124 451.8 768 39.3
RcHm_v2.0_Chr6g0299841 Rosa chinensis HOM05D004952 ORTHO05D006131 1.4e-124 451.4 761 39.7
vmacro02786 Vaccinium macrocarpon HOM05D004952 ORTHO05D006131 1.4e-124 451.4 772 39.1
DCAR_008784 Daucus carota HOM05D004952 ORTHO05D006131 5.3e-124 449.5 752 40.0
Gohir.A10G194100 Gossypium hirsutum HOM05D004952 ORTHO05D006131 1.5e-123 448.0 767 39.9
THA.LOC104813523 Tarenaya hassleriana HOM05D004952 ORTHO05D006131 2.6e-123 447.2 766 39.0
CiPaw.16G049700 Carya illinoinensis HOM05D004952 ORTHO05D006131 9.9e-123 445.3 760 39.6
Cfa003370 Carpinus fangiana HOM05D004952 ORTHO05D006131 4.9e-122 443.0 763 40.0
Manes.02G076400 Manihot esculenta HOM05D004952 ORTHO05D006131 8.4e-122 442.2 736 39.9
Ca_15974_v3 Cicer arietinum L. HOM05D004952 ORTHO05D006131 1.4e-121 441.4 756 39.4
Ciclev10000139m.g Citrus clementina HOM05D004952 ORTHO05D006131 1.4e-121 441.4 766 39.4
Duzib114G0971 Durio zibethinus HOM05D004952 ORTHO05D006131 1.9e-121 441.0 761 39.0
Gorai.011G225900 Gossypium raimondii HOM05D004952 ORTHO05D006131 1.9e-121 441.0 765 39.1
Gohir.D10G201200 Gossypium hirsutum HOM05D004952 ORTHO05D006131 3.2e-121 440.3 765 39.0
Sp5g35550 Schrenkiella parvula HOM05D004952 ORTHO05D006131 4.2e-121 439.9 766 38.6
Cpa.g.sc64.8 Carica papaya HOM05D004952 ORTHO05D006131 5.5e-121 439.5 766 39.3
Thhalv10018067m.g Eutrema salsugineum HOM05D004952 ORTHO05D006131 1.2e-120 438.3 762 38.6
CANSAT35G0575 Cannabis sativa HOM05D004952 ORTHO05D006131 1.6e-120 438.0 759 37.4
Mapoly0015s0183 Marchantia polymorpha HOM05D004952 ORTHO05D006131 2.1e-120 437.6 799 38.5
PGR031G2121 Punica granatum HOM05D004952 ORTHO05D006131 2.7e-120 437.2 754 38.5
Nitab4.5_0000068g0320 Nicotiana tabacum HOM05D004952 ORTHO05D006131 4.6e-120 436.4 754 39.0
Os12g0606100 Oryza sativa ssp. japonica HOM05D004952 ORTHO05D006131 1.8e-119 434.5 766 36.8
Sed0020372 Sechium edule HOM05D004952 ORTHO05D006131 1.8e-119 434.5 757 38.0
AT1G80260 Arabidopsis thaliana HOM05D004952 ORTHO05D006131 2.3e-119 434.1 769 39.3
HanXRQChr02g0059171 Helianthus annuus HOM05D004952 ORTHO05D006131 2.3e-119 434.1 753 37.7
PSO339G5893 Papaver somniferum HOM05D004952 ORTHO05D006131 2.3e-119 434.1 737 39.6
Glyma.06G036500 Glycine max HOM05D004952 ORTHO05D006131 5.1e-119 433.0 772 37.6
PGSC0003DMG400008031 Solanum tuberosum HOM05D004952 ORTHO05D006131 5.1e-119 433.0 785 37.3
Sabra16G0008200 Salix brachista HOM05D004952 ORTHO05D006131 8.7e-119 432.2 773 38.0
Lj1g0021809 Lotus japonicus HOM05D004952 ORTHO05D006131 1.5e-118 431.4 766 38.5
Os02g0523300 Oryza sativa ssp. japonica HOM05D004952 ORTHO05D006131 1.5e-118 431.4 782 37.0
CsaV3_4G034010 Cucumis sativus L. HOM05D004952 ORTHO05D006131 2.5e-118 430.6 756 39.2
Eucgr.F02379 Eucalyptus grandis HOM05D004952 ORTHO05D006131 3.3e-118 430.3 762 38.7
Medtr3g101230 Medicago truncatula HOM05D004952 ORTHO05D006131 4.3e-118 429.9 770 37.3
VMungo1309G1417 Vigna mungo HOM05D004952 ORTHO05D006131 5.6e-118 429.5 772 37.3
CARHR074230 Cardamine hirsuta HOM05D004952 ORTHO05D006131 9.6e-118 428.7 767 37.8
Solyc04g079390.3 Solanum lycopersicum HOM05D004952 ORTHO05D006131 9.6e-118 428.7 798 37.7
Lalb_Chr08g0245691 Lupinus albus HOM05D004952 ORTHO05D006131 1.6e-117 427.9 762 37.4
CANSAT25G3148 Cannabis sativa HOM05D004952 ORTHO05D006131 2.1e-117 427.6 761 37.6
Psat5g044920 Pisum sativum HOM05D004952 ORTHO05D006131 2.1e-117 427.6 766 38.4
Sopen04g033000 Solanum pennellii HOM05D004952 ORTHO05D006131 2.1e-117 427.6 805 37.8
CAN.G371.63 Capsicum annuum HOM05D004952 ORTHO05D006131 2.8e-117 427.2 792 38.5
Peaxi162Scf01092g00128 Petunia axillaris HOM05D004952 ORTHO05D006131 2.8e-117 427.2 758 38.4
ClCG05G019550 Citrullus lanatus HOM05D004952 ORTHO05D006131 6.2e-117 426.0 765 39.0
TPR.G26027 Trifolium pratense HOM05D004952 ORTHO05D006131 9.0e-116 422.2 769 36.7
BcaC03g15988 Brassica carinata HOM05D004952 ORTHO05D006131 1.5e-115 421.4 770 37.7
A02p23690 Brassica napus HOM05D004952 ORTHO05D006131 2.0e-115 421.0 770 37.5
arahy.Tifrunner.gnm1.ann1.SSY1YH Arachis hypogaea HOM05D004952 ORTHO05D006131 2.6e-115 420.6 756 36.8
Lsat_1_v5_gn_6_69040 Lactuca sativa HOM05D004952 ORTHO05D006131 2.6e-115 420.6 769 37.2
Zm00001eb327280 Zea mays HOM05D004952 ORTHO05D006131 2.6e-115 420.6 759 37.0
BraA02t07362Z Brassica rapa HOM05D004952 ORTHO05D006131 3.4e-115 420.2 770 37.5
Phvul.009G062500 Phaseolus vulgaris HOM05D004952 ORTHO05D006131 4.5e-115 419.9 764 37.0
Sc18g0002370 Simmondsia chinensis HOM05D004952 ORTHO05D006131 5.8e-115 419.5 763 37.5
Aa31LG4G540 Aethionema arabicum HOM05D004952 ORTHO05D006131 1.7e-114 417.9 818 35.5
Manes.10G059950 Manihot esculenta HOM05D004952 ORTHO05D006131 1.7e-114 417.9 763 38.5
BcaB02g07284 Brassica carinata HOM05D004952 ORTHO05D006131 2.2e-114 417.5 779 37.9
arahy.Tifrunner.gnm1.ann1.LUQS0S Arachis hypogaea HOM05D004952 ORTHO05D006131 6.5e-114 416.0 756 36.8
Carub.0001s2004 Capsella rubella HOM05D004952 ORTHO05D006131 6.5e-114 416.0 773 37.3
Hund10174 Selenicereus undatus HOM05D004952 ORTHO05D006131 6.5e-114 416.0 763 36.3
BcaB05g25284 Brassica carinata HOM05D004952 ORTHO05D006131 8.4e-114 415.6 773 37.5
C02p37450 Brassica napus HOM05D004952 ORTHO05D006131 8.4e-114 415.6 770 37.1
BolC2t09757H Brassica oleracea HOM05D004952 ORTHO05D006131 1.1e-113 415.2 772 37.0
MSTRG.25114 Avicennia marina HOM05D004952 ORTHO05D006131 5.5e-113 412.9 755 37.0
COL.COLO4_06475 Corchorus olitorius HOM05D004952 ORTHO05D006131 9.3e-113 412.1 770 37.7
Nitab4.5_0012613g0030 Nicotiana tabacum HOM05D004952 ORTHO05D006131 1.2e-112 411.8 756 38.0
AT1G20570 Arabidopsis thaliana HOM05D004952 ORTHO05D006131 1.6e-112 411.4 765 37.9
Haze_25582 Corylus avellana HOM05D004952 ORTHO05D006131 2.3e-111 407.5 849 35.5
Migut.C00614 Erythranthe guttata HOM05D004952 ORTHO05D006131 3.0e-111 407.1 763 36.6
TAR625G1292 Trochodendron aralioides HOM05D004952 ORTHO05D006131 6.7e-111 406.0 761 37.2
SalBow7G3268 Salvia bowleyana HOM05D004952 ORTHO05D006131 1.6e-109 401.4 759 36.5
AUR62038364 Chenopodium quinoa HOM05D004952 ORTHO05D006131 2.6e-107 394.0 760 36.4
AUR62040965 Chenopodium quinoa HOM05D004952 ORTHO05D006131 3.8e-106 390.2 765 36.3
ECA240G1628 Erigeron canadensis HOM05D000006 ORTHO05D000001 5.0e-106 389.8 750 36.1
EL10Ac2g03413 Beta vulgaris HOM05D004952 ORTHO05D006131 1.6e-101 374.8 787 35.1
Oeu055752.1 Olea europaea HOM05D004952 ORTHO05D006131 3.1e-100 370.5 758 34.3
CSS0007693 Camellia sinensis var. sinensis HOM05D004952 ORTHO05D006131 9.1e-100 369.0 1013 30.4
FAN20G1371 Fragaria x ananassa HOM05D004952 ORTHO05D006131 1.2e-99 368.6 768 35.5
Dinv39342 Davidia involucrata HOM05D004952 ORTHO05D006131 2.2e-98 364.4 670 38.5
Actinidia03540 Actinidia chinensis HOM05D004952 ORTHO05D006131 1.0e-95 355.5 760 35.3
GSVIVG01009573001 Vitis vinifera HOM05D004952 ORTHO05D006131 2.3e-95 354.4 758 35.0
MELO3C016726.2 Cucumis melo HOM05D004952 ORTHO05D006131 3.9e-95 353.6 754 36.1
SHI13748 Sapria himalayana HOM05D004952 ORTHO05D006131 6.3e-93 346.3 776 33.8
AagrBONN_evm.TU.Sc2ySwM_344.3827 Anthoceros agrestis HOM05D004952 ORTHO05D006131 9.1e-92 342.4 794 33.9
Hma1.2p1_0260F.1_g104660 Hydrangea macrophylla HOM05D004952 ORTHO05D006131 5.9e-91 339.7 633 38.1
SEGI_09331 Sequoiadendron giganteum HOM05D004952 ORTHO05D006131 4.1e-84 317.0 162 95.1
Cc00_g16150 Coffea canephora HOM05D004952 ORTHO05D006131 2.6e-83 314.3 668 33.8
HPP92_010073 Vanilla planifolia HOM05D004952 ORTHO05D006131 4.2e-81 307.0 780 32.3
Cc10_g03830 Coffea canephora HOM05D004952 ORTHO05D006131 7.5e-78 296.2 650 32.3
Cc00_g35230 Coffea canephora HOM05D004952 ORTHO05D006131 4.2e-73 280.4 261 55.2
Cc00_g35300 Coffea canephora HOM05D004952 ORTHO05D006131 9.4e-73 279.3 261 55.6
Oeu007037.1 Olea europaea HOM05D004952 ORTHO05D006131 8.0e-64 249.6 765 29.2
SGA_v2.0_scaffold156G37306 Striga asiatica HOM05D004952 ORTHO05D006131 1.4e-63 248.8 661 31.3
BcaC08g45301 Brassica carinata HOM05D004952 ORTHO05D006131 4.4e-62 243.8 614 33.4
BolC6t38070H Brassica oleracea HOM05D004952 ORTHO05D006131 1.7e-61 241.9 293 48.5
unitig_0.g724 Utricularia gibba HOM05D004952 ORTHO05D006131 2.2e-61 241.5 261 50.6
CBR_g22067 Chara braunii HOM05D004952 ORTHO05D006131 3.7e-61 240.7 995 26.5
Potri.014G184801 Populus trichocarpa HOM05D004952 ORTHO05D006131 5.0e-58 230.3 261 49.8
Potri.016G000100 Populus trichocarpa HOM05D004952 ORTHO05D006131 2.0e-51 208.4 565 31.0
CSS0048180 Camellia sinensis var. sinensis HOM05D004952 ORTHO05D006131 9.5e-49 199.5 642 30.1
CDE04G1747 Ceratophyllum demersum HOM05D004952 ORTHO05D006131 1.5e-46 192.2 329 38.6
unitig_0.g725 Utricularia gibba HOM05D004952 ORTHO05D006131 4.7e-24 117.5 144 38.9
CSS0028060 Camellia sinensis var. sinensis HOM05D004952 ORTHO05D006131 6.0e-19 100.5 68 72.1
Glyma.04G036420 Glycine max HOM05D004952 ORTHO05D006131 7.3e-17 93.6 89 50.6
CBR_g19823 Chara braunii HOM05D004952 ORTHO05D000937 1.5e-14 85.9 121 39.7
MCO11G910 Micromonas commoda HOM05D004952 ORTHO05D006131 6.0e-11 73.9 210 25.2
MELO3C010311.2 Cucumis melo HOM05D004952 ORTHO05D006131 2.3e-10 72.0 54 59.3
Glyma.04G036380 Glycine max HOM05D004952 ORTHO05D006131 2.5e-09 68.6 71 42.3
C06p29070 Brassica napus HOM05D002649 ORTHO05D002838 3.3e-09 68.2 168 29.8
MELO3C016650.2 Cucumis melo HOM05D004952 ORTHO05D006131 3.3e-09 68.2 53 62.3
C06p29060 Brassica napus HOM05D004952 ORTHO05D006131 5.3e-07 60.8 75 44.0
BolC6t38069H Brassica oleracea HOM05D004952 ORTHO05D006131 5.3e-07 60.8 75 44.0
SGA_v2.0_scaffold5008G54579 Striga asiatica HOM05D004952 ORTHO05D006131 1.5e-06 59.3 91 41.8
CANSAT54G2676 Cannabis sativa HOM05D005083 ORTHO05D006310 9.9e-06 56.6 178 22.5


User provided reference genes

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