Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_19143 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 5.3e-178 627.5 295 100.0
SEGI_03231 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 4.0e-133 478.4 292 74.0
Nn1g07946 Nelumbo nucifera HOM05D006573 ORTHO05D008073 2.3e-117 426.0 294 63.6
GSVIVG01026405001 Vitis vinifera HOM05D006573 ORTHO05D008073 2.3e-117 426.0 280 67.1
Thecc.05G259800 Theobroma cacao HOM05D006573 ORTHO05D008073 4.4e-116 421.8 280 66.4
ATR0069G016 Amborella trichopoda HOM05D006573 ORTHO05D008073 7.5e-116 421.0 294 64.3
Eucgr.B02180 Eucalyptus grandis HOM05D006573 ORTHO05D008073 7.5e-116 421.0 279 66.7
Potri.013G053100 Populus trichocarpa HOM05D006573 ORTHO05D008073 2.8e-115 419.1 289 65.4
THA.LOC104805797 Tarenaya hassleriana HOM05D006573 ORTHO05D008073 3.7e-115 418.7 279 65.6
TAR362G0441 Trochodendron aralioides HOM05D006573 ORTHO05D008073 6.3e-115 417.9 289 63.7
Manes.09G144600 Manihot esculenta HOM05D006573 ORTHO05D008073 8.3e-115 417.5 289 64.4
CSS0006565 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 4.1e-114 415.2 274 66.1
Gohir.A11G241000 Gossypium hirsutum HOM05D006573 ORTHO05D008073 5.4e-114 414.8 279 65.6
Hund07152 Selenicereus undatus HOM05D006573 ORTHO05D008073 5.4e-114 414.8 272 66.5
Cc09_g03200 Coffea canephora HOM05D006573 ORTHO05D008073 7.0e-114 414.5 292 63.7
Gohir.D11G250400 Gossypium hirsutum HOM05D006573 ORTHO05D008073 1.2e-113 413.7 279 65.6
Gorai.007G268500 Gossypium raimondii HOM05D006573 ORTHO05D008073 1.2e-113 413.7 279 65.6
CARHR008450 Cardamine hirsuta HOM05D006573 ORTHO05D008073 1.6e-113 413.3 280 65.0
Thhalv10007587m.g Eutrema salsugineum HOM05D006573 ORTHO05D008073 1.6e-113 413.3 280 65.0
MBI11_g07442_MAGBIO Magnolia biondii HOM05D006573 ORTHO05D008073 1.6e-113 413.3 293 62.1
Mapoly0111s0023 Marchantia polymorpha HOM05D006573 ORTHO05D008073 1.6e-113 413.3 285 64.6
Cpa.g.sc51.78 Carica papaya HOM05D006573 ORTHO05D008073 2.0e-113 412.9 278 65.5
Aqoxy2G03898 Aquilegia oxysepala HOM05D006573 ORTHO05D008073 4.5e-113 411.8 283 63.6
AL1G18980 Arabidopsis lyrata HOM05D006573 ORTHO05D008073 4.5e-113 411.8 281 65.1
Prupe.6G356100 Prunus persica HOM05D006573 ORTHO05D008073 4.5e-113 411.8 293 61.4
CANSAT21G0678 Cannabis sativa HOM05D006573 ORTHO05D008073 5.9e-113 411.4 293 62.5
FAN09G4254 Fragaria x ananassa HOM05D006573 ORTHO05D008073 5.9e-113 411.4 288 63.2
Medtr7g116630 Medicago truncatula HOM05D006573 ORTHO05D008073 5.9e-113 411.4 290 61.7
Ciclev10019925m.g Citrus clementina HOM05D006573 ORTHO05D008073 7.8e-113 411.0 279 64.9
Duzib177G1122 Durio zibethinus HOM05D006573 ORTHO05D008073 7.8e-113 411.0 279 64.9
FvH4_6g01130 Fragaria vesca HOM05D006573 ORTHO05D008073 7.8e-113 411.0 288 63.2
FAN05G2122 Fragaria x ananassa HOM05D006573 ORTHO05D008073 7.8e-113 411.0 288 63.2
FAN05G3303 Fragaria x ananassa HOM05D006573 ORTHO05D008073 7.8e-113 411.0 288 63.2
FAN14G5930 Fragaria x ananassa HOM05D006573 ORTHO05D008073 7.8e-113 411.0 288 63.2
MD12G1255200 Malus domestica HOM05D006573 ORTHO05D008073 1.3e-112 410.2 293 62.1
PGSC0003DMG400010688 Solanum tuberosum HOM05D006573 ORTHO05D008073 1.3e-112 410.2 295 61.4
Nitab4.5_0012098g0010 Nicotiana tabacum HOM05D006573 ORTHO05D008073 1.7e-112 409.8 294 61.9
CiPaw.07G075700 Carya illinoinensis HOM05D006573 ORTHO05D008073 2.3e-112 409.5 294 62.6
Glyma.03G253500 Glycine max HOM05D006573 ORTHO05D008073 2.3e-112 409.5 288 63.2
Sc09g0001730 Simmondsia chinensis HOM05D006573 ORTHO05D008073 2.3e-112 409.5 273 65.6
BraA06t23762Z Brassica rapa HOM05D006573 ORTHO05D008073 2.9e-112 409.1 280 63.2
Nitab4.5_0000344g0030 Nicotiana tabacum HOM05D006573 ORTHO05D008073 3.8e-112 408.7 294 61.6
TPR.G4727 Trifolium pratense HOM05D006573 ORTHO05D008073 3.8e-112 408.7 294 60.5
Aa31sc20G120 Aethionema arabicum HOM05D006573 ORTHO05D008073 5.0e-112 408.3 280 62.9
A06p05540 Brassica napus HOM05D006573 ORTHO05D008073 5.0e-112 408.3 280 63.6
Haze_04495 Corylus avellana HOM05D006573 ORTHO05D008073 5.0e-112 408.3 294 61.6
Ca_09476_v3 Cicer arietinum L. HOM05D006573 ORTHO05D008073 6.6e-112 407.9 289 62.6
Solyc04g050930.3 Solanum lycopersicum HOM05D006573 ORTHO05D008073 6.6e-112 407.9 295 61.0
Sopen04g022050 Solanum pennellii HOM05D006573 ORTHO05D008073 8.6e-112 407.5 295 61.0
TWI34G1215 Tripterygium wilfordii HOM05D006573 ORTHO05D008073 8.6e-112 407.5 277 63.9
AT1G08550 Arabidopsis thaliana HOM05D006573 ORTHO05D008073 1.1e-111 407.1 281 64.4
EL10Ac4g09803 Beta vulgaris HOM05D006573 ORTHO05D008073 1.5e-111 406.8 273 64.8
BolC5t29425H Brassica oleracea HOM05D006573 ORTHO05D008073 1.5e-111 406.8 280 63.2
Lj1g0015745 Lotus japonicus HOM05D006573 ORTHO05D008073 1.5e-111 406.8 294 61.9
arahy.Tifrunner.gnm1.ann1.L0KK3Q Arachis hypogaea HOM05D006573 ORTHO05D008073 1.9e-111 406.4 289 63.3
C05p06650 Brassica napus HOM05D006573 ORTHO05D008073 1.9e-111 406.4 280 62.9
arahy.Tifrunner.gnm1.ann1.ZGZX3T Arachis hypogaea HOM05D006573 ORTHO05D008073 2.5e-111 406.0 289 62.6
CAN.G29.20 Capsicum annuum HOM05D006573 ORTHO05D008073 2.5e-111 406.0 295 61.0
RcHm_v2.0_Chr3g0448661 Rosa chinensis HOM05D006573 ORTHO05D008073 2.5e-111 406.0 293 61.8
SGA_v2.0_scaffold13G06342 Striga asiatica HOM05D006573 ORTHO05D008073 2.5e-111 406.0 293 61.4
Actinidia06814 Actinidia chinensis HOM05D006573 ORTHO05D008073 4.3e-111 405.2 274 63.9
CDE05G0683 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 4.3e-111 405.2 286 62.9
Sp1g07210 Schrenkiella parvula HOM05D006573 ORTHO05D008073 4.3e-111 405.2 280 63.2
Sed0012720 Sechium edule HOM05D006573 ORTHO05D008073 4.3e-111 405.2 288 62.2
VMungo0540G0667 Vigna mungo HOM05D006573 ORTHO05D008073 4.3e-111 405.2 293 60.8
ClCG11G010060 Citrullus lanatus HOM05D006573 ORTHO05D008073 5.6e-111 404.8 283 62.5
Glyma.19G251000 Glycine max HOM05D006573 ORTHO05D008073 7.3e-111 404.4 288 62.2
Hma1.2p1_0123F.1_g058030 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 7.3e-111 404.4 293 61.4
MELO3C008677.2 Cucumis melo HOM05D006573 ORTHO05D008073 9.5e-111 404.1 283 62.5
Dinv19279 Davidia involucrata HOM05D006573 ORTHO05D008073 9.5e-111 404.1 273 63.4
CsaV3_2G010250 Cucumis sativus L. HOM05D006573 ORTHO05D008073 1.6e-110 403.3 279 62.4
Carub.0001s0791 Capsella rubella HOM05D006573 ORTHO05D008073 2.1e-110 402.9 281 63.3
AUR62000660 Chenopodium quinoa HOM05D006573 ORTHO05D008073 2.1e-110 402.9 286 62.9
PSO017G7064 Papaver somniferum HOM05D006573 ORTHO05D008073 2.1e-110 402.9 289 60.9
Phvul.006G108200 Phaseolus vulgaris HOM05D006573 ORTHO05D008073 2.1e-110 402.9 293 60.8
HPP92_020222 Vanilla planifolia HOM05D001545 ORTHO05D001600 2.1e-110 402.9 272 63.2
AUR62005294 Chenopodium quinoa HOM05D006573 ORTHO05D008073 2.8e-110 402.5 286 63.3
PSO063G7541 Papaver somniferum HOM05D006573 ORTHO05D008073 2.8e-110 402.5 291 61.9
Atru.chr2.1254 Acer truncatum HOM05D006573 ORTHO05D008073 3.6e-110 402.1 293 61.4
ECA248G2645 Erigeron canadensis HOM05D006573 ORTHO05D008073 8.0e-110 401.0 271 64.2
Psat3g005000 Pisum sativum HOM05D006573 ORTHO05D008073 1.0e-109 400.6 292 59.9
SalBow1G2715 Salvia bowleyana HOM05D006573 ORTHO05D008073 1.4e-109 400.2 283 61.8
AagrBONN_evm.TU.Sc2ySwM_228.1660 Anthoceros agrestis HOM05D006573 ORTHO05D008073 2.3e-109 399.4 285 62.1
Zm00001eb085840 Zea mays HOM05D006573 ORTHO05D008073 3.1e-109 399.1 270 64.8
Migut.F02066 Erythranthe guttata HOM05D006573 ORTHO05D008073 4.0e-109 398.7 293 60.8
MSTRG.8177 Avicennia marina HOM05D006573 ORTHO05D008073 6.8e-109 397.9 292 61.0
COL.COLO4_20557 Corchorus olitorius HOM05D006573 ORTHO05D008073 8.9e-109 397.5 259 66.8
SalBow1G0293 Salvia bowleyana HOM05D006573 ORTHO05D008073 8.9e-109 397.5 283 61.5
HanXRQChr13g0406621 Helianthus annuus HOM05D006573 ORTHO05D008073 2.0e-108 396.4 274 62.4
Sabra13G0048100 Salix brachista HOM05D006573 ORTHO05D008073 7.5e-108 394.4 316 58.5
Lalb_Chr18g0044221 Lupinus albus HOM05D006573 ORTHO05D008073 1.3e-107 393.7 289 59.2
Oeu054601.1 Olea europaea HOM05D006573 ORTHO05D008073 1.2e-105 387.1 327 55.4
Pp3c3_13220 Physcomitrium patens HOM05D006573 ORTHO05D008073 1.6e-105 386.7 275 63.6
Lj2A407T38 Lonicera japonica HOM05D006573 ORTHO05D008073 7.8e-105 384.4 293 58.0
SMO270G0104 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.7e-104 383.3 261 63.6
BcaB07g34098 Brassica carinata HOM05D006573 ORTHO05D008073 1.6e-102 376.7 280 60.0
Peaxi162Scf01011g00215 Petunia axillaris HOM05D006573 ORTHO05D008073 2.1e-102 376.3 274 60.9
CSS0039030 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 5.2e-101 371.7 274 60.6
Lsat_1_v5_gn_7_62281 Lactuca sativa HOM05D006573 ORTHO05D008073 5.2e-101 371.7 271 61.3
DCAR_013654 Daucus carota HOM05D006573 ORTHO05D008073 2.6e-100 369.4 308 55.5
CBR_g38554 Chara braunii HOM05D006573 ORTHO05D008073 3.7e-99 365.5 260 61.2
vmacro12852 Vaccinium macrocarpon HOM05D006573 ORTHO05D008073 1.3e-96 357.1 363 47.7
Lj2A405T39 Lonicera japonica HOM05D006573 ORTHO05D008073 3.3e-95 352.4 283 55.5
Ah.06g188810 Amaranthus hybridus HOM05D006573 ORTHO05D008073 1.9e-90 336.7 273 55.7
CDE05G0621 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 4.1e-90 335.5 237 62.9
Rhsim10G0138000 Rhododendron simsii HOM05D006573 ORTHO05D008073 1.7e-88 330.1 293 54.3
unitig_46.g17980 Utricularia gibba HOM05D006573 ORTHO05D008073 1.1e-71 274.2 184 65.2
Hma1.2p1_0123F.1_g058020 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 1.9e-71 273.5 195 62.1
SMO297G0027 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 2.8e-70 269.6 205 57.1
SMO334G0031 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 3.6e-70 269.2 205 56.6
SMO297G0014 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.1e-69 267.7 205 57.1
SMO270G0143 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 5.8e-68 261.9 205 54.6
PRCOL_00001224 Prasinoderma coloniale HOM05D006573 ORTHO05D008073 1.9e-66 256.9 292 44.2
MCO16G084 Micromonas commoda HOM05D006573 ORTHO05D008073 5.4e-66 255.4 279 43.7
Os04g0379700 Oryza sativa ssp. japonica HOM05D006573 ORTHO05D008073 4.3e-63 245.7 170 63.5
PGSC0003DMG400010690 Solanum tuberosum HOM05D006573 ORTHO05D008073 4.5e-60 235.7 229 48.9
Lj2C408T2 Lonicera japonica HOM05D006573 ORTHO05D008073 5.5e-58 228.8 199 54.8
PGSC0003DMG400020993 Solanum tuberosum HOM05D006573 ORTHO05D008073 2.5e-39 166.8 210 40.5
SMO266G0012 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.9e-34 150.6 98 63.3
unitig_46.g17981 Utricularia gibba HOM05D006573 ORTHO05D008073 1.1e-13 81.6 67 59.7
ATR1120G154 Amborella trichopoda HOM05D006367 ORTHO05D007942 2.2e-11 73.9 266 22.2
AUR62039784 Chenopodium quinoa HOM05D006367 ORTHO05D007942 2.5e-10 70.5 255 21.6
AUR62040525 Chenopodium quinoa HOM05D006367 ORTHO05D007942 2.5e-10 70.5 255 21.6
EL10Ac7g17324 Beta vulgaris HOM05D006367 ORTHO05D007942 7.2e-10 68.9 245 20.8
Pp3c8_810 Physcomitrium patens HOM05D006367 ORTHO05D007942 1.6e-09 67.8 279 21.1
CDE04G0187 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 4.7e-09 66.2 225 20.4
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 8.0e-09 65.5 263 20.5
Manes.12G144300 Manihot esculenta HOM05D006367 ORTHO05D007942 4.4e-07 59.7 131 23.7


User provided reference genes

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