Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_19069 Sequoiadendron giganteum HOM05D006097 ORTHO05D008538 0.0e+00 1169.1 572 100.0
PSO339G1331 Papaver somniferum HOM05D006097 ORTHO05D008538 2.4e-203 712.6 579 58.5
ATR0745G019 Amborella trichopoda HOM05D006097 ORTHO05D008538 1.7e-201 706.4 578 59.5
MD07G1040200 Malus domestica HOM05D006097 ORTHO05D008538 1.8e-198 696.4 563 59.0
Prupe.2G036100 Prunus persica HOM05D006097 ORTHO05D008538 4.4e-197 691.8 573 58.6
GSVIVG01013488001 Vitis vinifera HOM05D006097 ORTHO05D008538 6.4e-196 688.0 579 58.0
Nn2g14836 Nelumbo nucifera HOM05D006097 ORTHO05D008538 8.3e-196 687.6 570 60.0
CiPaw.14G007600 Carya illinoinensis HOM05D006097 ORTHO05D008538 7.0e-195 684.5 536 61.4
Dinv22036 Davidia involucrata HOM05D006097 ORTHO05D008538 9.2e-195 684.1 536 61.2
QL04p017855 Quercus lobata HOM05D006097 ORTHO05D008538 1.6e-194 683.3 535 60.7
Lj3g0013868 Lotus japonicus HOM05D006097 ORTHO05D008538 7.3e-192 674.5 535 60.2
COL.COLO4_20657 Corchorus olitorius HOM05D006097 ORTHO05D008538 2.8e-191 672.5 573 57.9
Migut.N01845 Erythranthe guttata HOM05D006097 ORTHO05D008538 1.4e-190 670.2 539 59.4
RcHm_v2.0_Chr1g0324291 Rosa chinensis HOM05D006097 ORTHO05D008538 2.3e-190 669.5 572 57.3
Hund13358 Selenicereus undatus HOM05D006097 ORTHO05D008538 2.3e-190 669.5 562 58.0
Haze_03039 Corylus avellana HOM05D006097 ORTHO05D008538 4.0e-190 668.7 535 59.6
AUR62032650 Chenopodium quinoa HOM05D006097 ORTHO05D008538 6.8e-190 667.9 551 57.4
Actinidia21518 Actinidia chinensis HOM05D006097 ORTHO05D008538 1.5e-189 666.8 576 56.2
Os01g0952700 Oryza sativa ssp. japonica HOM05D006097 ORTHO05D008538 9.9e-189 664.1 536 58.8
Potri.003G196300 Populus trichocarpa HOM05D006097 ORTHO05D008538 9.9e-189 664.1 537 58.8
TPR.G17806 Trifolium pratense HOM05D006097 ORTHO05D008538 9.9e-189 664.1 580 56.6
Lalb_Chr19g0132421 Lupinus albus HOM05D006097 ORTHO05D008538 1.7e-188 663.3 558 57.3
Gohir.D06G184900 Gossypium hirsutum HOM05D006097 ORTHO05D008538 2.2e-188 662.9 570 57.0
Nitab4.5_0001621g0010 Nicotiana tabacum HOM05D006097 ORTHO05D008538 2.9e-188 662.5 548 57.1
Gohir.A06G175000 Gossypium hirsutum HOM05D006097 ORTHO05D008538 4.9e-188 661.8 577 56.5
Sopen08g005450 Solanum pennellii HOM05D006097 ORTHO05D008538 4.9e-188 661.8 545 57.4
Ciclev10004623m.g Citrus clementina HOM05D006097 ORTHO05D008538 1.4e-187 660.2 581 55.9
FAN01G0546 Fragaria x ananassa HOM05D006097 ORTHO05D008538 1.4e-187 660.2 567 57.8
Gorai.010G216200 Gossypium raimondii HOM05D006097 ORTHO05D008538 1.4e-187 660.2 572 56.8
Psat5g221440 Pisum sativum HOM05D006097 ORTHO05D008538 1.4e-187 660.2 575 56.3
Atru.chr7.628 Acer truncatum HOM05D006097 ORTHO05D008538 1.9e-187 659.8 572 57.0
Lsat_1_v5_gn_7_31901 Lactuca sativa HOM05D006097 ORTHO05D004880 1.9e-187 659.8 537 58.8
Duzib114G0946 Durio zibethinus HOM05D006097 ORTHO05D008538 3.2e-187 659.1 578 56.4
CAN.G176.2 Capsicum annuum HOM05D006097 ORTHO05D008538 4.1e-187 658.7 545 57.1
SGA_v2.0_scaffold232G43504 Striga asiatica HOM05D006097 ORTHO05D008538 1.6e-186 656.8 571 56.4
ECA236G3136 Erigeron canadensis HOM05D006097 ORTHO05D008538 2.1e-186 656.4 537 58.3
Thecc.10G154600 Theobroma cacao HOM05D006097 ORTHO05D008538 6.0e-186 654.8 573 55.8
Medtr3g014750 Medicago truncatula HOM05D006097 ORTHO05D008538 7.8e-186 654.4 579 55.3
Cfa010917 Carpinus fangiana HOM05D006097 ORTHO05D008538 1.0e-185 654.1 566 56.7
PGR031G1965 Punica granatum HOM05D006097 ORTHO05D008538 1.3e-185 653.7 580 55.3
Peaxi162Scf00767g00518 Petunia axillaris HOM05D006097 ORTHO05D008538 6.6e-185 651.4 537 57.4
BraA04t16135Z Brassica rapa HOM05D006097 ORTHO05D008538 8.6e-185 651.0 576 55.6
Glyma.13G197200 Glycine max HOM05D006097 ORTHO05D008538 8.6e-185 651.0 536 58.8
CANSAT56G2143 Cannabis sativa HOM05D006097 ORTHO05D008538 1.1e-184 650.6 536 56.9
Sabra03G0146400 Salix brachista HOM05D006097 ORTHO05D008538 1.5e-184 650.2 579 55.3
BcaB02g08396 Brassica carinata HOM05D006097 ORTHO05D008538 1.9e-184 649.8 536 57.6
THA.LOC104826726 Tarenaya hassleriana HOM05D006097 ORTHO05D008538 1.9e-184 649.8 576 54.5
C04p36530 Brassica napus HOM05D006097 ORTHO05D008538 4.3e-184 648.7 536 57.5
Ah.12g062830 Amaranthus hybridus HOM05D006097 ORTHO05D008538 9.5e-184 647.5 563 56.3
HanXRQChr04g0113861 Helianthus annuus HOM05D006097 ORTHO05D008538 9.5e-184 647.5 536 58.0
Sp5g06630 Schrenkiella parvula HOM05D006097 ORTHO05D008538 1.6e-183 646.7 536 57.5
SalBow6G4726 Salvia bowleyana HOM05D006097 ORTHO05D008538 2.1e-183 646.4 558 56.6
Manes.04G159300 Manihot esculenta HOM05D006097 ORTHO05D008538 3.6e-183 645.6 536 57.5
Aqoxy2G00367 Aquilegia oxysepala HOM05D006097 ORTHO05D008538 6.2e-183 644.8 514 60.5
BcaC02g09793 Brassica carinata HOM05D006097 ORTHO05D008538 6.2e-183 644.8 536 57.1
AUR62026861 Chenopodium quinoa HOM05D006097 ORTHO05D008538 8.1e-183 644.4 562 55.5
HPP92_013975 Vanilla planifolia HOM05D006097 ORTHO05D008538 8.1e-183 644.4 574 56.1
AL5G37140 Arabidopsis lyrata HOM05D006097 ORTHO05D008538 1.1e-182 644.0 576 54.9
A04p04190 Brassica napus HOM05D006097 ORTHO05D008538 1.1e-182 644.0 576 55.2
Aa31LG10G10820 Aethionema arabicum HOM05D006097 ORTHO05D008538 1.2e-181 640.6 536 57.6
Thhalv10010237m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 1.2e-181 640.6 536 57.1
Carub.0005s2263 Capsella rubella HOM05D006097 ORTHO05D008538 5.8e-181 638.3 576 54.2
BolC4t25143H Brassica oleracea HOM05D006097 ORTHO05D008538 7.6e-181 637.9 554 55.6
FvH4_7g03070 Fragaria vesca HOM05D006097 ORTHO05D008538 2.9e-180 636.0 560 56.1
Cc02_g30220 Coffea canephora HOM05D006097 ORTHO05D008538 8.4e-180 634.4 536 57.1
CsaV3_5G036770 Cucumis sativus L. HOM05D006097 ORTHO05D008538 1.1e-179 634.0 536 56.2
CARHR165960 Cardamine hirsuta HOM05D006097 ORTHO05D008538 1.4e-179 633.6 569 54.5
EL10Ac2g02801 Beta vulgaris HOM05D006097 ORTHO05D008538 2.7e-178 629.4 633 50.4
arahy.Tifrunner.gnm1.ann1.HF4B4K Arachis hypogaea HOM05D006097 ORTHO05D008538 6.4e-172 608.2 621 51.0
CSS0004732 Camellia sinensis var. sinensis HOM05D006097 ORTHO05D008538 8.4e-172 607.8 536 55.6
ClCG05G026810 Citrullus lanatus HOM05D006097 ORTHO05D008538 4.0e-166 589.0 543 53.2
Phvul.011G206500 Phaseolus vulgaris HOM05D006097 ORTHO05D008538 6.9e-166 588.2 477 60.0
Eucgr.G03235 Eucalyptus grandis HOM05D006097 ORTHO05D008538 9.0e-166 587.8 536 53.5
Mapoly0021s0162 Marchantia polymorpha HOM05D006097 ORTHO05D008538 1.7e-164 583.6 577 49.7
SMO367G1089 Selaginella moellendorffii HOM05D006097 ORTHO05D008538 6.4e-164 581.6 560 52.0
PGSC0003DMG400025223 Solanum tuberosum HOM05D006097 ORTHO05D008538 5.4e-163 578.6 460 58.7
Solyc08g014470.4 Solanum lycopersicum HOM05D006097 ORTHO05D008538 1.1e-160 570.9 465 58.5
Sc07g0002170 Simmondsia chinensis HOM05D006097 ORTHO05D008538 2.1e-159 566.6 462 58.2
DCAR_031244 Daucus carota HOM05D006097 ORTHO05D008538 2.6e-157 559.7 460 57.0
Pp3c20_1490 Physcomitrium patens HOM05D006097 ORTHO05D008538 2.6e-157 559.7 540 51.9
Hma1.2p1_1627F.1_g294440 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 5.8e-157 558.5 463 58.3
MBI19_g07612_MAGBIO Magnolia biondii HOM05D006097 ORTHO05D008538 2.3e-153 546.6 533 52.7
AagrBONN_evm.TU.Sc2ySwM_340.253 Anthoceros agrestis HOM05D006097 ORTHO05D008538 6.9e-150 535.0 542 49.1
AT3G55850 Arabidopsis thaliana HOM05D006097 ORTHO05D008538 2.0e-149 533.5 464 56.0
unitig_52.g17390 Utricularia gibba HOM05D006097 ORTHO05D008538 1.1e-147 527.7 510 53.1
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 1.0e-145 521.2 536 51.5
MELO3C012474.2 Cucumis melo HOM05D006097 ORTHO05D008538 5.7e-144 515.4 425 56.9
arahy.Tifrunner.gnm1.ann1.RMFD7W Arachis hypogaea HOM05D006097 ORTHO05D008538 1.6e-143 513.8 603 46.8
QL04p017846 Quercus lobata HOM05D006097 ORTHO05D008538 2.9e-140 503.1 396 59.8
Sed0002543 Sechium edule HOM05D006097 ORTHO05D008538 3.0e-137 493.0 546 47.1
Hma1.2p1_1627F.1_g294450 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 9.7e-136 488.0 463 53.3
TAR623G0406 Trochodendron aralioides HOM05D006097 ORTHO05D008538 8.2e-127 458.4 351 63.0
AUR62037188 Chenopodium quinoa HOM05D006097 ORTHO05D008538 7.0e-126 455.3 395 56.5
Glyma.15G235400 Glycine max HOM05D006097 ORTHO05D008538 3.7e-119 433.0 476 47.9
Oeu048573.1 Olea europaea HOM05D006097 ORTHO05D008538 3.5e-109 399.8 333 57.1
CDE06G1230 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 4.7e-106 389.4 351 53.8
Ca_26912_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 1.4e-97 361.3 296 57.4
SMO367G0062 Selaginella moellendorffii HOM05D006097 ORTHO05D005621 1.1e-94 351.7 543 41.4
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 6.8e-89 332.4 537 37.1
MCO06G284 Micromonas commoda HOM05D006097 ORTHO05D008538 1.7e-87 327.8 564 37.2
vmacro12697 Vaccinium macrocarpon HOM05D006097 ORTHO05D008538 2.2e-87 327.4 261 59.8
Thhalv10010899m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 1.4e-86 324.7 266 56.0
VMungo1127G1698 Vigna mungo HOM05D006097 ORTHO05D008538 1.6e-85 321.2 261 59.0
Lj9A654G51 Lonicera japonica HOM05D006097 ORTHO05D008538 6.4e-79 299.3 237 59.1
Zm00001eb140700 Zea mays HOM05D006097 ORTHO05D008538 1.7e-76 291.2 250 56.4
FAN10G0529 Fragaria x ananassa HOM05D006097 ORTHO05D008538 3.1e-73 280.4 409 40.6
Cre06.g279350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 3.4e-72 276.9 453 37.5
SMO343G0029 Selaginella moellendorffii HOM05D004978 ORTHO05D005621 2.2e-71 274.2 471 37.6
TAR623G0702 Trochodendron aralioides HOM05D006097 ORTHO05D008538 1.9e-59 234.6 196 61.7
VMungo1127G1548 Vigna mungo HOM05D006097 ORTHO05D008538 8.1e-58 229.2 176 60.8
SEGI_33421 Sequoiadendron giganteum HOM05D006097 ORTHO05D020391 6.9e-57 226.1 110 100.0
Cre07.g313350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 2.9e-55 220.7 593 29.8
Pp3s32_630 Physcomitrium patens HOM05D006097 ORTHO05D008538 3.0e-52 210.7 534 30.3
Lj9A654T55 Lonicera japonica HOM05D006097 ORTHO05D008538 4.9e-47 193.4 140 62.9
PRCOL_00006109 Prasinoderma coloniale HOM05D006097 ORTHO05D008538 1.9e-43 181.4 397 33.2
QL04p017840 Quercus lobata HOM05D006097 ORTHO05D008538 1.8e-33 148.3 122 57.4
CDE06G0927 Ceratophyllum demersum HOM05D006097 ORTHO05D020391 1.1e-30 139.0 128 53.9
SMO197G0087 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 1.2e-21 109.0 115 47.8
Ca_03883_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 4.6e-21 107.1 97 49.5
Nn2g16009 Nelumbo nucifera HOM05D006097 ORTHO05D008538 4.6e-21 107.1 83 61.4
SMO274G0019 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 7.9e-21 106.3 112 48.2
SMO125G0001 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 1.0e-20 105.9 186 38.2
SMO212G0005 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 1.1e-19 102.4 117 46.2
DCAR_031243 Daucus carota HOM05D006097 ORTHO05D020391 2.0e-19 101.7 99 50.5
SMO005G0015 Selaginella moellendorffii HOM05D006097 ORTHO05D011308 5.7e-19 100.1 105 49.5
SMO009G0029 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 7.4e-19 99.8 115 46.1
CDE06G2151 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 1.3e-18 99.0 80 56.2
Medtr1224s0010 Medicago truncatula HOM05D006097 ORTHO05D008538 9.1e-17 92.8 545 24.2
RcHm_v2.0_Chr6g0254811 Rosa chinensis HOM05D006097 ORTHO05D020391 3.6e-13 80.9 56 62.5
Carub.0002s2671 Capsella rubella HOM05D006097 ORTHO05D008538 6.1e-13 80.1 54 63.0
BolC8t50740H Brassica oleracea HOM05D035890 ORTHO05D033370 7.7e-08 63.2 49 59.2
Nn313s46297 Nelumbo nucifera HOM05D006097 ORTHO05D008538 7.7e-08 63.2 45 68.9
CDE06G1678 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 6.5e-07 60.1 53 52.8
C08p31170 Brassica napus HOM05D035890 ORTHO05D033370 9.4e-06 56.2 42 59.5


User provided reference genes

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