Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_18728 Sequoiadendron giganteum HOM05D002100 ORTHO05D002310 4.8e-128 461.5 282 100.0
Lj2A72G40 Lonicera japonica HOM05D002100 ORTHO05D002310 1.9e-31 140.6 271 40.6
SEGI_28370 Sequoiadendron giganteum HOM05D002100 ORTHO05D002310 5.4e-31 139.0 288 37.2
Ah.12g058790 Amaranthus hybridus HOM05D002100 ORTHO05D002310 3.5e-30 136.3 272 37.1
Dinv13160 Davidia involucrata HOM05D002100 ORTHO05D002310 1.3e-29 134.4 263 38.0
PGR031G1388 Punica granatum HOM05D002100 ORTHO05D002310 3.9e-29 132.9 265 37.4
Ah.02g115630 Amaranthus hybridus HOM05D002100 ORTHO05D002310 5.1e-29 132.5 270 38.1
THA.LOC104827048 Tarenaya hassleriana HOM05D002100 ORTHO05D002310 1.5e-28 131.0 271 38.0
MBI16_g08501_MAGBIO Magnolia biondii HOM05D002100 ORTHO05D002310 2.5e-28 130.2 270 47.4
Lj3A950G35 Lonicera japonica HOM05D002100 ORTHO05D002310 3.3e-28 129.8 267 43.1
ATR0681G233 Amborella trichopoda HOM05D002100 ORTHO05D002310 9.6e-28 128.3 264 39.0
AUR62030813 Chenopodium quinoa HOM05D002100 ORTHO05D002310 9.6e-28 128.3 266 39.5
arahy.Tifrunner.gnm1.ann1.W35S2M Arachis hypogaea HOM05D002100 ORTHO05D002310 6.2e-27 125.6 279 38.0
GSVIVG01011185001 Vitis vinifera HOM05D002100 ORTHO05D002310 8.1e-27 125.2 264 38.3
TAR633G0418 Trochodendron aralioides HOM05D002100 ORTHO05D002310 2.4e-26 123.6 265 37.4
Mapoly0056s0016 Marchantia polymorpha HOM05D002100 ORTHO05D002310 3.1e-26 123.2 274 36.1
Oeu038756.1 Olea europaea HOM05D002100 ORTHO05D002310 3.1e-26 123.2 263 35.4
CSS0012400 Camellia sinensis var. sinensis HOM05D002100 ORTHO05D002310 5.3e-26 122.5 266 38.7
EL10Ac5g12541 Beta vulgaris HOM05D002100 ORTHO05D002310 6.9e-26 122.1 275 38.2
unitig_37.g12654 Utricularia gibba HOM05D002100 ORTHO05D002310 9.0e-26 121.7 277 36.1
Haze_21024 Corylus avellana HOM05D002100 ORTHO05D002310 1.2e-25 121.3 273 38.5
MD00G1061700 Malus domestica HOM05D002100 ORTHO05D002310 1.2e-25 121.3 268 39.2
arahy.Tifrunner.gnm1.ann1.6DFT40 Arachis hypogaea HOM05D002100 ORTHO05D002310 1.5e-25 120.9 274 36.9
arahy.Tifrunner.gnm1.ann1.F79NB3 Arachis hypogaea HOM05D002100 ORTHO05D002310 1.5e-25 120.9 274 36.9
Ciclev10011058m.g Citrus clementina HOM05D002100 ORTHO05D002310 1.5e-25 120.9 265 38.5
Medtr4g016980 Medicago truncatula HOM05D002100 ORTHO05D002310 2.6e-25 120.2 273 43.2
Phvul.010G078200 Phaseolus vulgaris HOM05D002100 ORTHO05D002310 2.6e-25 120.2 272 36.4
VMungo0331G2056 Vigna mungo HOM05D002100 ORTHO05D002310 2.6e-25 120.2 267 37.8
Eucgr.A00534 Eucalyptus grandis HOM05D002100 ORTHO05D002310 3.4e-25 119.8 268 47.0
Lj3g0018881 Lotus japonicus HOM05D002100 ORTHO05D002310 3.4e-25 119.8 270 36.7
MD12G1171800 Malus domestica HOM05D002100 ORTHO05D002310 5.8e-25 119.0 269 36.8
Thecc.05G013200 Theobroma cacao HOM05D002100 ORTHO05D002310 5.8e-25 119.0 263 34.2
arahy.Tifrunner.gnm1.ann1.7LSJ26 Arachis hypogaea HOM05D002100 ORTHO05D002310 7.6e-25 118.6 297 39.7
AUR62030481 Chenopodium quinoa HOM05D002100 ORTHO05D002310 7.6e-25 118.6 263 40.3
FAN05G2705 Fragaria x ananassa HOM05D002100 ORTHO05D002310 7.6e-25 118.6 262 47.3
Atru.chr8.2268 Acer truncatum HOM05D002100 ORTHO05D002310 9.9e-25 118.2 265 35.8
AagrBONN_evm.TU.Sc2ySwM_228.837 Anthoceros agrestis HOM05D002100 ORTHO05D002310 9.9e-25 118.2 292 36.0
Manes.08G093900 Manihot esculenta HOM05D002100 ORTHO05D002310 9.9e-25 118.2 269 39.0
Cpa.g.sc11.84 Carica papaya HOM05D002100 ORTHO05D002310 1.3e-24 117.9 265 36.6
Duzib128G2033 Durio zibethinus HOM05D002100 ORTHO05D002310 1.3e-24 117.9 263 35.0
Lsat_1_v5_gn_9_35140 Lactuca sativa HOM05D002100 ORTHO05D002310 1.3e-24 117.9 266 37.2
Potri.016G119300 Populus trichocarpa HOM05D002100 ORTHO05D002310 1.3e-24 117.9 270 44.4
Glyma.01G119500 Glycine max HOM05D002100 ORTHO05D002310 1.7e-24 117.5 268 37.3
Oeu028413.2 Olea europaea HOM05D002100 ORTHO05D002310 1.7e-24 117.5 265 35.1
Ca_20214_v3 Cicer arietinum L. HOM05D002100 ORTHO05D002310 2.2e-24 117.1 270 37.0
MELO3C025998.2 Cucumis melo HOM05D002100 ORTHO05D002310 2.9e-24 116.7 272 36.4
Aqoxy2G00848 Aquilegia oxysepala HOM05D002100 ORTHO05D002310 3.8e-24 116.3 275 40.4
FAN02G2934 Fragaria x ananassa HOM05D002100 ORTHO05D002310 3.8e-24 116.3 263 45.6
Prupe.6G280000 Prunus persica HOM05D002100 ORTHO05D002310 3.8e-24 116.3 272 35.7
ClCG04G006930 Citrullus lanatus HOM05D002100 ORTHO05D002310 4.9e-24 115.9 268 36.2
Gohir.D04G131900 Gossypium hirsutum HOM05D002100 ORTHO05D002310 4.9e-24 115.9 267 34.5
Gorai.012G115700 Gossypium raimondii HOM05D002100 ORTHO05D002310 4.9e-24 115.9 267 34.5
Cfa017184 Carpinus fangiana HOM05D002100 ORTHO05D002310 6.4e-24 115.5 271 41.0
Cc06_g01130 Coffea canephora HOM05D002100 ORTHO05D002310 6.4e-24 115.5 269 37.9
Lalb_Chr19g0124441 Lupinus albus HOM05D002100 ORTHO05D002310 6.4e-24 115.5 270 38.1
TWI53G0714 Tripterygium wilfordii HOM05D002100 ORTHO05D002310 6.4e-24 115.5 267 42.3
FvH4_6g11200 Fragaria vesca HOM05D002100 ORTHO05D002310 8.4e-24 115.2 269 39.8
FAN14G3811 Fragaria x ananassa HOM05D002100 ORTHO05D002310 8.4e-24 115.2 269 39.8
FAN14G5440 Fragaria x ananassa HOM05D002100 ORTHO05D002310 8.4e-24 115.2 269 39.8
Gohir.A04G092600 Gossypium hirsutum HOM05D002100 ORTHO05D002310 8.4e-24 115.2 265 34.3
TPR.G14311 Trifolium pratense HOM05D002100 ORTHO05D002310 8.4e-24 115.2 274 38.0
CsaV3_4G026330 Cucumis sativus L. HOM05D002100 ORTHO05D002310 1.1e-23 114.8 272 36.0
Hund10985 Selenicereus undatus HOM05D002100 ORTHO05D002310 1.1e-23 114.8 267 36.7
Glyma.03G055900 Glycine max HOM05D002100 ORTHO05D002310 1.4e-23 114.4 273 34.1
Sed0010553 Sechium edule HOM05D002100 ORTHO05D002310 1.4e-23 114.4 264 35.6
CiPaw.09G211200 Carya illinoinensis HOM05D002100 ORTHO05D002310 1.9e-23 114.0 271 37.3
FAN09G3884 Fragaria x ananassa HOM05D002100 ORTHO05D002310 1.9e-23 114.0 271 42.4
Potri.006G102000 Populus trichocarpa HOM05D002100 ORTHO05D002310 1.9e-23 114.0 271 36.9
RcHm_v2.0_Chr3g0462681 Rosa chinensis HOM05D002100 ORTHO05D002310 2.4e-23 113.6 264 41.7
Duzib093G1500 Durio zibethinus HOM05D002100 ORTHO05D002310 3.2e-23 113.2 263 35.7
THA.LOC104823377 Tarenaya hassleriana HOM05D002100 ORTHO05D002310 3.2e-23 113.2 271 36.5
TAR369G1037 Trochodendron aralioides HOM05D002100 ORTHO05D002310 3.2e-23 113.2 270 37.4
Sc01g0006900 Simmondsia chinensis HOM05D002100 ORTHO05D002310 5.5e-23 112.5 271 36.5
PSO384G0317 Papaver somniferum HOM05D002100 ORTHO05D002310 7.1e-23 112.1 276 45.7
COL.COLO4_14507 Corchorus olitorius HOM05D002100 ORTHO05D002310 1.2e-22 111.3 259 35.5
Sabra16G0115200 Salix brachista HOM05D002100 ORTHO05D002310 1.2e-22 111.3 270 40.4
HPP92_003703 Vanilla planifolia HOM05D002100 ORTHO05D002310 1.6e-22 110.9 283 35.0
Hund14872 Selenicereus undatus HOM05D002100 ORTHO05D002310 2.7e-22 110.2 267 36.7
vmacro08886 Vaccinium macrocarpon HOM05D002100 ORTHO05D002310 2.7e-22 110.2 268 34.3
BolC4t28156H Brassica oleracea HOM05D002100 ORTHO05D002310 3.5e-22 109.8 264 34.8
Manes.09G107100 Manihot esculenta HOM05D002100 ORTHO05D002310 3.5e-22 109.8 267 39.7
HPP92_001051 Vanilla planifolia HOM05D002100 ORTHO05D002310 3.5e-22 109.8 278 32.7
BraA04t18396Z Brassica rapa HOM05D002100 ORTHO05D002310 6.0e-22 109.0 263 34.2
Pp3c6_1780 Physcomitrium patens HOM05D002100 ORTHO05D002310 6.0e-22 109.0 279 33.7
Solyc09g014770.3 Solanum lycopersicum HOM05D002100 ORTHO05D002310 6.0e-22 109.0 269 38.3
Sopen09g007630 Solanum pennellii HOM05D002100 ORTHO05D002310 6.0e-22 109.0 269 38.3
BolC4t22551H Brassica oleracea HOM05D002100 ORTHO05D002310 1.3e-21 107.8 272 34.2
Lsat_1_v5_gn_5_150780 Lactuca sativa HOM05D002100 ORTHO05D002310 1.3e-21 107.8 268 40.3
QL07p035112 Quercus lobata HOM05D002100 ORTHO05D002310 1.3e-21 107.8 276 37.3
ECA247G1886 Erigeron canadensis HOM05D002100 ORTHO05D002310 1.8e-21 107.5 300 34.0
BraA05t19749Z Brassica rapa HOM05D002100 ORTHO05D002310 2.3e-21 107.1 272 34.9
Duzib106G1491 Durio zibethinus HOM05D002100 ORTHO05D002310 2.3e-21 107.1 273 34.1
SGA_v2.0_scaffold240G44082 Striga asiatica HOM05D002100 ORTHO05D002310 2.3e-21 107.1 269 33.8
PSO339G2369 Papaver somniferum HOM05D002100 ORTHO05D002310 3.0e-21 106.7 285 43.9
BcaC02g07484 Brassica carinata HOM05D002100 ORTHO05D002310 5.1e-21 105.9 262 34.0
C04p66540 Brassica napus HOM05D002100 ORTHO05D002310 5.1e-21 105.9 262 34.0
PGSC0003DMG400008496 Solanum tuberosum HOM05D002100 ORTHO05D002310 5.1e-21 105.9 269 36.1
MSTRG.10210 Avicennia marina HOM05D002100 ORTHO05D002310 1.1e-20 104.8 267 34.1
BcaB06g29039 Brassica carinata HOM05D002100 ORTHO05D002310 1.1e-20 104.8 262 39.7
Nn2g13166 Nelumbo nucifera HOM05D002100 ORTHO05D002310 1.1e-20 104.8 265 41.5
AL4G35320 Arabidopsis lyrata HOM05D002100 ORTHO05D002310 1.5e-20 104.4 261 34.9
Rhsim04G0126600 Rhododendron simsii HOM05D002100 ORTHO05D002310 1.9e-20 104.0 276 34.4
C04p09450 Brassica napus HOM05D002100 ORTHO05D002310 2.5e-20 103.6 272 34.2
DCAR_018689 Daucus carota HOM05D002100 ORTHO05D002310 2.5e-20 103.6 263 33.8
AL4G35360 Arabidopsis lyrata HOM05D002100 ORTHO05D002310 3.3e-20 103.2 261 34.9
Lalb_Chr01g0023161 Lupinus albus HOM05D002100 ORTHO05D002310 3.3e-20 103.2 268 35.8
BcaC02g11966 Brassica carinata HOM05D002100 ORTHO05D002310 4.3e-20 102.8 272 33.5
A05p07800 Brassica napus HOM05D002100 ORTHO05D002310 4.3e-20 102.8 274 34.3
A04p29280 Brassica napus HOM05D002100 ORTHO05D002310 5.6e-20 102.4 267 33.3
TWI74G0675 Tripterygium wilfordii HOM05D002100 ORTHO05D002310 5.6e-20 102.4 267 39.7
HanXRQChr10g0294081 Helianthus annuus HOM05D002100 ORTHO05D002310 7.4e-20 102.1 267 36.0
SGA_v2.0_scaffold110G31207 Striga asiatica HOM05D002100 ORTHO05D002310 7.4e-20 102.1 264 46.6
Aa31LG5G23200 Aethionema arabicum HOM05D002100 ORTHO05D002310 9.6e-20 101.7 262 34.4
Migut.J00142 Erythranthe guttata HOM05D002100 ORTHO05D002310 9.6e-20 101.7 268 41.0
AT2G38280 Arabidopsis thaliana HOM05D002100 ORTHO05D002310 1.3e-19 101.3 265 35.1
Sp4g20560 Schrenkiella parvula HOM05D002100 ORTHO05D002310 1.3e-19 101.3 266 33.8
CARHR132860 Cardamine hirsuta HOM05D002100 ORTHO05D002310 2.8e-19 100.1 270 33.7
Ca_07657_v3 Cicer arietinum L. HOM05D002100 ORTHO05D002310 2.8e-19 100.1 271 36.5
Migut.L02027 Erythranthe guttata HOM05D002100 ORTHO05D002310 2.8e-19 100.1 273 32.2
Sed0012374 Sechium edule HOM05D002100 ORTHO05D002310 2.8e-19 100.1 184 41.3
BcaB02g09212 Brassica carinata HOM05D002100 ORTHO05D002310 4.8e-19 99.4 269 37.9
CSS0017895 Camellia sinensis var. sinensis HOM05D002100 ORTHO05D002310 6.2e-19 99.0 271 33.6
CSS0031024 Camellia sinensis var. sinensis HOM05D002100 ORTHO05D002310 6.2e-19 99.0 271 33.6
Thhalv10016246m.g Eutrema salsugineum HOM05D002100 ORTHO05D002310 6.2e-19 99.0 266 34.6
CAN.G283.15 Capsicum annuum HOM05D002100 ORTHO05D002310 8.1e-19 98.6 266 32.7
Carub.0004s2023 Capsella rubella HOM05D002100 ORTHO05D002310 1.1e-18 98.2 268 35.1
CDE08G1256 Ceratophyllum demersum HOM05D002100 ORTHO05D002310 5.3e-18 95.9 264 32.6
HanXRQChr13g0406591 Helianthus annuus HOM05D002100 ORTHO05D002310 9.0e-18 95.1 262 34.0
Sabra06G0078300 Salix brachista HOM05D002100 ORTHO05D002310 1.2e-17 94.7 272 33.1
Nitab4.5_0000261g0090 Nicotiana tabacum HOM05D002100 ORTHO05D002310 2.6e-17 93.6 265 31.7
Zm00001eb331540 Zea mays HOM05D002100 ORTHO05D002310 3.4e-17 93.2 266 31.2
Os07g0693500 Oryza sativa ssp. japonica HOM05D002100 ORTHO05D002310 4.5e-17 92.8 265 31.3
ATR0665G373 Amborella trichopoda HOM05D002100 ORTHO05D002310 1.0e-16 91.7 292 34.6
Gohir.D09G161800 Gossypium hirsutum HOM05D002100 ORTHO05D002310 2.2e-16 90.5 263 31.9
Nn2g10891 Nelumbo nucifera HOM05D002100 ORTHO05D002310 2.9e-16 90.1 142 46.5
Psat3g126760 Pisum sativum HOM05D002100 ORTHO05D002310 2.9e-16 90.1 268 32.1
Peaxi162Scf00890g00113 Petunia axillaris HOM05D002100 ORTHO05D002310 4.9e-16 89.4 160 42.5
Psat7g244640 Pisum sativum HOM05D002100 ORTHO05D002310 6.5e-16 89.0 270 36.3
MSTRG.26820 Avicennia marina HOM05D002100 ORTHO05D002310 8.4e-16 88.6 265 32.1
PSO591G0226 Papaver somniferum HOM05D002100 ORTHO05D002310 1.4e-15 87.8 215 44.7
Gohir.A09G166200 Gossypium hirsutum HOM05D002100 ORTHO05D002310 1.9e-15 87.4 261 34.1
Nitab4.5_0007485g0020 Nicotiana tabacum HOM05D002100 ORTHO05D002310 2.5e-15 87.0 119 47.1
PSO832G0251 Papaver somniferum HOM05D002100 ORTHO05D002310 2.5e-15 87.0 208 44.2
Lj4g0002284 Lotus japonicus HOM05D002100 ORTHO05D002310 3.2e-15 86.7 131 45.8
Gorai.006G183500 Gossypium raimondii HOM05D002100 ORTHO05D002310 5.5e-15 85.9 261 34.1
Prupe.1G265900 Prunus persica HOM05D002100 ORTHO05D002310 1.2e-14 84.7 253 38.3
Aqoxy4G02500 Aquilegia oxysepala HOM05D002100 ORTHO05D002310 1.6e-14 84.3 266 35.7
SHI12840 Sapria himalayana HOM05D002100 ORTHO05D002310 2.7e-14 83.6 266 29.7
Lalb_Chr03g0043341 Lupinus albus HOM05D002100 ORTHO05D002310 1.0e-13 81.6 270 31.5
CDE12G0667 Ceratophyllum demersum HOM05D002100 ORTHO05D002310 1.3e-13 81.3 151 40.4
Pp3c6_16120 Physcomitrium patens HOM05D002100 ORTHO05D002310 6.7e-13 79.0 188 37.2
TAR629G0632 Trochodendron aralioides HOM05D002100 ORTHO05D002310 5.7e-12 75.9 193 35.2
MD13G1080600 Malus domestica HOM05D002100 ORTHO05D002310 1.6e-11 74.3 237 32.1
Nn4g23017 Nelumbo nucifera HOM05D002100 ORTHO05D002310 4.1e-10 69.7 262 30.2
Peaxi162Scf00009g01531 Petunia axillaris HOM05D002100 ORTHO05D002310 4.1e-10 69.7 265 28.3
arahy.Tifrunner.gnm1.ann1.32614Y Arachis hypogaea HOM05D005392 ORTHO05D006709 1.5e-09 67.8 126 39.7
Zm00001eb286120 Zea mays HOM05D002100 ORTHO05D002310 2.6e-09 67.0 164 36.6
DCAR_008623 Daucus carota HOM05D002100 ORTHO05D002310 3.4e-09 66.6 261 28.7
MBI04_g20679_MAGBIO Magnolia biondii HOM05D002100 ORTHO05D002310 5.9e-09 65.9 293 34.1
Dinv24948 Davidia involucrata HOM05D002100 ORTHO05D002310 2.2e-08 63.9 229 31.4
Pp3c25_10230 Physcomitrium patens HOM05D002100 ORTHO05D002310 2.2e-08 63.9 291 28.5
Thecc.02G233900 Theobroma cacao HOM05D002100 ORTHO05D002310 5.0e-08 62.8 255 34.9
GSVIVG01020087001 Vitis vinifera HOM05D002100 ORTHO05D002310 5.0e-08 62.8 250 32.4
ECA247G2023 Erigeron canadensis HOM05D002100 ORTHO05D002310 6.5e-08 62.4 262 27.1
Lj3A1043G72 Lonicera japonica HOM05D002100 ORTHO05D002310 2.5e-07 60.5 234 31.2
Lj4g0001192 Lotus japonicus HOM05D002100 ORTHO05D002310 3.2e-07 60.1 176 35.8
Psat5g041240 Pisum sativum HOM05D002100 ORTHO05D002310 3.2e-07 60.1 184 30.4
arahy.Tifrunner.gnm1.ann1.4BR56W Arachis hypogaea HOM05D002100 ORTHO05D002310 4.2e-07 59.7 298 26.8
Ca_22843_v3 Cicer arietinum L. HOM05D002100 ORTHO05D002310 5.5e-07 59.3 196 29.6
Glyma.18G127267 Glycine max HOM05D002100 ORTHO05D002310 5.5e-07 59.3 167 31.7
arahy.Tifrunner.gnm1.ann1.3BV3CB Arachis hypogaea HOM05D002100 ORTHO05D002310 1.2e-06 58.2 298 30.2
SMO340G0172 Selaginella moellendorffii HOM05D002100 ORTHO05D002310 1.2e-06 58.2 113 42.5
Cpa.g.sc5.284 Carica papaya HOM05D002100 ORTHO05D002310 2.7e-06 57.0 266 27.8
Cfa009047 Carpinus fangiana HOM05D002100 ORTHO05D002310 2.7e-06 57.0 261 31.4
Phvul.003G070600 Phaseolus vulgaris HOM05D002100 ORTHO05D002310 2.7e-06 57.0 194 36.1
TPR.G3806 Trifolium pratense HOM05D002100 ORTHO05D002310 2.7e-06 57.0 121 37.2
VMungo0251G3550 Vigna mungo HOM05D002100 ORTHO05D002310 2.7e-06 57.0 194 36.1
Glyma.08G295700 Glycine max HOM05D002100 ORTHO05D002310 3.5e-06 56.6 181 35.9
Oeu057175.3 Olea europaea HOM05D002100 ORTHO05D002310 3.5e-06 56.6 264 27.7
QL03p066060 Quercus lobata HOM05D002100 ORTHO05D002310 3.5e-06 56.6 233 36.9
Ciclev10030660m.g Citrus clementina HOM05D002100 ORTHO05D002310 4.6e-06 56.2 254 33.1
SMO141G0063 Selaginella moellendorffii HOM05D002100 ORTHO05D002310 6.1e-06 55.8 48 58.3
FAN07G0815 Fragaria x ananassa HOM05D002100 ORTHO05D002310 7.9e-06 55.5 233 34.8
Manes.05G095600 Manihot esculenta HOM05D002100 ORTHO05D002310 7.9e-06 55.5 232 29.7


User provided reference genes

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