Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_17528 Sequoiadendron giganteum HOM05D002496 ORTHO05D002787 0.0e+00 1175.2 631 100.0
Nn7g35861 Nelumbo nucifera HOM05D002496 ORTHO05D002787 2.0e-206 723.0 635 65.8
Cfa009562 Carpinus fangiana HOM05D002496 ORTHO05D002787 4.3e-201 705.3 635 64.4
GSVIVG01025470001 Vitis vinifera HOM05D002496 ORTHO05D002787 6.8e-199 698.0 635 64.3
TAR623G0218 Trochodendron aralioides HOM05D002496 ORTHO05D002787 8.9e-199 697.6 644 63.7
Prupe.6G003300 Prunus persica HOM05D002496 ORTHO05D002787 1.3e-197 693.7 635 63.5
MD11G1003500 Malus domestica HOM05D002496 ORTHO05D002787 1.4e-196 690.3 635 63.1
Thhalv10011175m.g Eutrema salsugineum HOM05D002496 ORTHO05D002787 7.0e-196 688.0 636 62.7
Thecc.09G199700 Theobroma cacao HOM05D002496 ORTHO05D002787 1.6e-195 686.8 638 63.6
MD03G1003600 Malus domestica HOM05D002496 ORTHO05D002787 2.0e-195 686.4 635 62.4
QL01p003675 Quercus lobata HOM05D002496 ORTHO05D002787 3.5e-195 685.6 639 62.9
Potri.001G003900 Populus trichocarpa HOM05D002496 ORTHO05D002787 6.0e-195 684.9 635 61.3
Actinidia39346 Actinidia chinensis HOM05D002496 ORTHO05D002787 1.0e-194 684.1 635 63.8
CSS0046180 Camellia sinensis var. sinensis HOM05D002496 ORTHO05D002787 1.3e-194 683.7 635 63.1
Potri.003G221100 Populus trichocarpa HOM05D002496 ORTHO05D002787 1.3e-194 683.7 639 63.5
AL1G63400 Arabidopsis lyrata HOM05D002496 ORTHO05D002787 1.7e-194 683.3 635 62.7
FAN25G0679 Fragaria x ananassa HOM05D002496 ORTHO05D002787 1.7e-194 683.3 647 62.0
Carub.0001s4386 Capsella rubella HOM05D002496 ORTHO05D002787 3.0e-194 682.6 635 62.4
Sp1g41030 Schrenkiella parvula HOM05D002496 ORTHO05D002787 3.9e-194 682.2 635 62.0
Aqoxy1G00475 Aquilegia oxysepala HOM05D002496 ORTHO05D002787 5.0e-194 681.8 633 63.0
CANSAT11G2110 Cannabis sativa HOM05D002496 ORTHO05D002787 6.6e-194 681.4 635 62.8
THA.LOC104822681 Tarenaya hassleriana HOM05D002496 ORTHO05D002787 1.1e-193 680.6 635 62.0
Migut.D02589 Erythranthe guttata HOM05D002496 ORTHO05D002787 1.5e-193 680.2 635 62.5
Gohir.D03G146400 Gossypium hirsutum HOM05D002496 ORTHO05D002787 2.5e-193 679.5 634 63.7
Gohir.A03G022300 Gossypium hirsutum HOM05D002496 ORTHO05D002787 3.3e-193 679.1 634 63.9
Dinv13473 Davidia involucrata HOM05D002496 ORTHO05D002787 4.3e-193 678.7 645 62.3
PSO384G1583 Papaver somniferum HOM05D002496 ORTHO05D002787 7.3e-193 677.9 636 62.9
Duzib168G0200 Durio zibethinus HOM05D002496 ORTHO05D002787 9.5e-193 677.6 634 63.4
Gorai.003G153800 Gossypium raimondii HOM05D002496 ORTHO05D002787 9.5e-193 677.6 634 63.6
HanXRQChr13g0405751 Helianthus annuus HOM05D002496 ORTHO05D002787 1.6e-192 676.8 631 64.3
Sopen12g035030 Solanum pennellii HOM05D002496 ORTHO05D002787 4.7e-192 675.2 635 63.3
AT1G55350 Arabidopsis thaliana HOM05D002496 ORTHO05D002787 6.2e-192 674.9 635 62.2
Solyc12g100360.1 Solanum lycopersicum HOM05D002496 ORTHO05D002787 6.2e-192 674.9 635 63.3
RcHm_v2.0_Chr5g0083811 Rosa chinensis HOM05D002496 ORTHO05D002787 1.8e-191 673.3 635 62.8
CARHR045010 Cardamine hirsuta HOM05D002496 ORTHO05D002787 5.2e-191 671.8 635 61.4
THA.LOC104810325 Tarenaya hassleriana HOM05D002496 ORTHO05D002787 2.0e-190 669.8 635 61.6
PSO339G0705 Papaver somniferum HOM05D002496 ORTHO05D002787 2.6e-190 669.5 639 62.4
Rhsim01G0184300 Rhododendron simsii HOM05D002496 ORTHO05D002787 3.4e-190 669.1 635 61.6
A06p00230 Brassica napus HOM05D002496 ORTHO05D002787 7.5e-190 667.9 635 61.3
MSTRG.20937 Avicennia marina HOM05D002496 ORTHO05D002787 1.3e-189 667.2 634 60.9
FAN16G0954 Fragaria x ananassa HOM05D002496 ORTHO05D002787 1.3e-189 667.2 666 59.8
Oeu023700.1 Olea europaea HOM05D002496 ORTHO05D002787 1.3e-189 667.2 635 61.1
SalBow2G0058 Salvia bowleyana HOM05D002496 ORTHO05D002787 1.3e-189 667.2 650 60.3
BolC6t36109H Brassica oleracea HOM05D002496 ORTHO05D002787 2.2e-189 666.4 635 60.9
PGR119G1355 Punica granatum HOM05D002496 ORTHO05D002787 2.2e-189 666.4 634 62.5
ECA233G0145 Erigeron canadensis HOM05D002496 ORTHO05D002787 6.4e-189 664.8 636 62.7
BraA06t23239Z Brassica rapa HOM05D002496 ORTHO05D002787 8.3e-189 664.5 635 61.1
ATR0827G153 Amborella trichopoda HOM05D002496 ORTHO05D002787 4.1e-188 662.1 630 62.1
HanXRQChr02g0057261 Helianthus annuus HOM05D002496 ORTHO05D002787 4.1e-188 662.1 635 62.7
Glyma.08G125500 Glycine max HOM05D002496 ORTHO05D002787 7.0e-188 661.4 630 61.9
CsaV3_1G041650 Cucumis sativus L. HOM05D002496 ORTHO05D002787 1.2e-187 660.6 636 61.3
BcaB04g16962 Brassica carinata HOM05D002496 ORTHO05D002787 1.6e-187 660.2 635 60.9
Cc01_g00070 Coffea canephora HOM05D002496 ORTHO05D002787 4.6e-187 658.7 642 60.3
TPR.G6803 Trifolium pratense HOM05D002496 ORTHO05D002787 4.6e-187 658.7 640 60.9
MELO3C015577.2 Cucumis melo HOM05D002496 ORTHO05D002787 6.0e-187 658.3 636 61.2
Aa31LG10G1150 Aethionema arabicum HOM05D002496 ORTHO05D002787 7.8e-187 657.9 677 59.1
C06p10330 Brassica napus HOM05D002496 ORTHO05D002787 1.0e-186 657.5 638 59.2
vmacro12599 Vaccinium macrocarpon HOM05D002496 ORTHO05D002787 1.3e-186 657.1 644 60.4
Ca_17842_v3 Cicer arietinum L. HOM05D002496 ORTHO05D002787 1.7e-186 656.8 640 60.9
Phvul.002G247600 Phaseolus vulgaris HOM05D002496 ORTHO05D002787 1.7e-186 656.8 630 61.9
Lsat_1_v5_gn_6_53141 Lactuca sativa HOM05D002496 ORTHO05D002787 8.6e-186 654.4 643 62.4
Eucgr.J01766 Eucalyptus grandis HOM05D002496 ORTHO05D002787 1.6e-184 650.2 635 57.2
Medtr8g088520 Medicago truncatula HOM05D002496 ORTHO05D002787 3.6e-184 649.0 635 60.3
Psat7g064160 Pisum sativum HOM05D002496 ORTHO05D002787 1.8e-183 646.7 631 60.5
Cpa.g.sc119.40 Carica papaya HOM05D002496 ORTHO05D002787 1.5e-182 643.7 593 63.1
Sed0022657 Sechium edule HOM05D002496 ORTHO05D002787 7.5e-182 641.3 636 60.2
Sc16g0012220 Simmondsia chinensis HOM05D002496 ORTHO05D002787 2.9e-181 639.4 635 58.4
Lalb_Chr13g0295581 Lupinus albus HOM05D002496 ORTHO05D002787 3.7e-181 639.0 634 60.3
Peaxi162Scf00738g00312 Petunia axillaris HOM05D002496 ORTHO05D002787 3.7e-181 639.0 635 60.9
Ciclev10014012m.g Citrus clementina HOM05D002496 ORTHO05D002787 8.3e-181 637.9 564 67.2
Sed0000966 Sechium edule HOM05D002496 ORTHO05D002787 9.2e-180 634.4 632 60.0
Haze_22941 Corylus avellana HOM05D002496 ORTHO05D002787 1.2e-179 634.0 649 59.6
Glyma.05G167200 Glycine max HOM05D002496 ORTHO05D002787 1.2e-179 634.0 630 57.3
SMO332G0020 Selaginella moellendorffii HOM05D002496 ORTHO05D002787 7.8e-179 631.3 635 59.2
Manes.03G087600 Manihot esculenta HOM05D002496 ORTHO05D002787 4.0e-175 619.0 564 65.1
CiPaw.13G177100 Carya illinoinensis HOM05D002496 ORTHO05D002787 8.9e-175 617.8 564 64.4
HPP92_024699 Vanilla planifolia HOM05D002496 ORTHO05D002787 2.6e-174 616.3 630 58.3
BcaC08g43619 Brassica carinata HOM05D002496 ORTHO05D002787 7.6e-174 614.8 635 55.7
Actinidia30436 Actinidia chinensis HOM05D002496 ORTHO05D002787 1.4e-172 610.5 635 58.4
Mapoly0026s0110 Marchantia polymorpha HOM05D002496 ORTHO05D002787 4.2e-172 609.0 647 57.3
AUR62040902 Chenopodium quinoa HOM05D002496 ORTHO05D002787 4.3e-169 599.0 635 57.6
Lj4g0028195 Lotus japonicus HOM05D002496 ORTHO05D002787 2.8e-168 596.3 638 57.4
Oeu023952.2 Olea europaea HOM05D002496 ORTHO05D002787 2.8e-168 596.3 636 59.0
Mapoly0026s0090 Marchantia polymorpha HOM05D002496 ORTHO05D002787 3.4e-166 589.3 650 56.5
Os02g0709400 Oryza sativa ssp. japonica HOM05D002496 ORTHO05D002787 3.8e-165 585.9 629 53.4
Atru.chr3.2106 Acer truncatum HOM05D002496 ORTHO05D002787 1.6e-163 580.5 640 57.5
EL10Ac4g10386 Beta vulgaris HOM05D002496 ORTHO05D002787 9.6e-161 571.2 666 54.2
Zm00001eb014030 Zea mays HOM05D002496 ORTHO05D002787 1.6e-160 570.5 637 51.5
Nitab4.5_0000827g0130 Nicotiana tabacum HOM05D002496 ORTHO05D002787 3.6e-160 569.3 721 52.3
SGA_v2.0_scaffold3G01729 Striga asiatica HOM05D002496 ORTHO05D002787 5.1e-154 548.9 640 53.4
Pp3c17_17550 Physcomitrium patens HOM05D002496 ORTHO05D002787 1.5e-153 547.4 635 53.1
Lj2A763T47 Lonicera japonica HOM05D002496 ORTHO05D002787 3.1e-151 539.7 592 56.9
TAR369G0007 Trochodendron aralioides HOM05D002496 ORTHO05D002787 3.4e-150 536.2 519 63.2
Sabra03G0164600 Salix brachista HOM05D002496 ORTHO05D002787 1.3e-146 524.2 685 52.7
Sabra01G0002600 Salix brachista HOM05D002496 ORTHO05D002787 5.6e-145 518.8 680 51.6
ClCG03G014540 Citrullus lanatus HOM05D002496 ORTHO05D002787 1.9e-140 503.8 636 53.3
Migut.D02566 Erythranthe guttata HOM05D002496 ORTHO05D002787 3.0e-138 496.5 506 60.3
Hund21627 Selenicereus undatus HOM05D002496 ORTHO05D002787 3.3e-137 493.0 642 51.4
VMungo0251G3571 Vigna mungo HOM05D002496 ORTHO05D002787 8.2e-136 488.4 514 59.7
DCAR_029934 Daucus carota HOM05D002496 ORTHO05D002787 1.9e-132 477.2 510 59.2
SMO334G0130 Selaginella moellendorffii HOM05D002496 ORTHO05D002787 3.9e-130 469.5 632 49.8
AUR62019163 Chenopodium quinoa HOM05D002496 ORTHO05D002787 3.7e-128 463.0 665 48.7
FvH4_3g45741 Fragaria vesca HOM05D002496 ORTHO05D002787 5.3e-127 459.1 459 60.3
Dinv11478 Davidia involucrata HOM05D002496 ORTHO05D002787 2.6e-126 456.8 464 63.1
AagrBONN_evm.TU.Sc2ySwM_344.939 Anthoceros agrestis HOM05D002496 ORTHO05D002787 5.0e-125 452.6 554 48.4
TWI34G0193 Tripterygium wilfordii HOM05D002496 ORTHO05D002787 1.1e-124 451.4 440 60.2
arahy.Tifrunner.gnm1.ann1.3G7H7K Arachis hypogaea HOM05D002496 ORTHO05D002787 6.3e-120 435.6 520 54.4
CDE02G0627 Ceratophyllum demersum HOM05D002496 ORTHO05D002787 6.3e-120 435.6 510 54.5
MBI01_g25638_MAGBIO Magnolia biondii HOM05D002496 ORTHO05D002787 9.1e-119 431.8 482 57.1
C03p92660 Brassica napus HOM05D002496 ORTHO05D002787 4.5e-118 429.5 568 48.8
arahy.Tifrunner.gnm1.ann1.P751E4 Arachis hypogaea HOM05D002496 ORTHO05D002787 1.3e-117 427.9 516 54.1
COL.COLO4_05794 Corchorus olitorius HOM05D002496 ORTHO05D002787 2.0e-105 387.5 443 51.0
unitig_899.g15353 Utricularia gibba HOM05D002496 ORTHO05D002787 1.1e-103 381.7 549 47.7
CAN.G1703.18 Capsicum annuum HOM05D002496 ORTHO05D002787 9.1e-95 352.1 404 57.7
CAN.G1703.3 Capsicum annuum HOM05D002496 ORTHO05D002787 2.0e-94 350.9 413 56.4
CAN.G1751.12 Capsicum annuum HOM05D002496 ORTHO05D002787 1.7e-93 347.8 404 57.2
CAN.G575.132 Capsicum annuum HOM05D002496 ORTHO05D002787 1.2e-89 335.1 410 52.9
Psat3g144720 Pisum sativum HOM05D002496 ORTHO05D002787 2.2e-88 330.9 314 59.2
CAN.G1579.7 Capsicum annuum HOM05D002496 ORTHO05D002787 1.4e-87 328.2 418 54.8
CAN.G309.134 Capsicum annuum HOM05D002496 ORTHO05D002787 5.8e-73 279.6 358 51.4
CAN.G2026.1 Capsicum annuum HOM05D002496 ORTHO05D002787 9.5e-68 262.3 339 55.5
CAN.G309.99 Capsicum annuum HOM05D002496 ORTHO05D002787 1.1e-66 258.8 320 51.2
CiPaw.14G137000 Carya illinoinensis HOM05D002496 ORTHO05D002787 1.5e-65 255.0 321 55.8
CAN.G575.112 Capsicum annuum HOM05D002496 ORTHO05D002787 4.1e-63 246.9 404 47.8
CAN.G1833.6 Capsicum annuum HOM05D002496 ORTHO05D002787 5.4e-63 246.5 321 55.5
CAN.G2119.3 Capsicum annuum HOM05D002496 ORTHO05D002787 4.6e-62 243.4 322 55.6
CAN.G1783.2 Capsicum annuum HOM05D002496 ORTHO05D002787 3.0e-61 240.7 291 53.3
CBR_g23691 Chara braunii HOM05D001190 ORTHO05D001764 5.8e-57 226.5 384 40.6
arahy.Tifrunner.gnm1.ann1.WZQ8WP Arachis hypogaea HOM05D002496 ORTHO05D002787 1.7e-56 224.9 411 41.1
CAN.G4338.1 Capsicum annuum HOM05D002496 ORTHO05D002787 1.9e-55 221.5 263 55.1
CAN.G1579.14 Capsicum annuum HOM05D002496 ORTHO05D002787 3.2e-55 220.7 297 56.6
CAN.G1353.19 Capsicum annuum HOM05D002496 ORTHO05D002787 5.1e-53 213.4 321 51.4
CAN.G309.113 Capsicum annuum HOM05D002496 ORTHO05D002787 3.6e-51 207.2 303 52.8
CAN.G309.146 Capsicum annuum HOM05D002496 ORTHO05D002787 2.2e-48 198.0 303 51.5
CAN.G134.157 Capsicum annuum HOM05D002496 ORTHO05D002787 3.8e-48 197.2 366 46.7
CAN.G309.130 Capsicum annuum HOM05D002496 ORTHO05D002787 5.4e-47 193.4 297 44.8
CAN.G1669.8 Capsicum annuum HOM05D002496 ORTHO05D002787 6.0e-46 189.9 226 54.4
CAN.G2119.2 Capsicum annuum HOM05D002496 ORTHO05D002787 1.9e-44 184.9 317 46.1
SHI31316 Sapria himalayana HOM05D002496 ORTHO05D002787 1.9e-44 184.9 150 63.3
CAN.G134.139 Capsicum annuum HOM05D002496 ORTHO05D002787 2.5e-44 184.5 404 40.8
CAN.G309.123 Capsicum annuum HOM05D002496 ORTHO05D002787 1.4e-42 178.7 236 50.0
CAN.G2802.1 Capsicum annuum HOM05D002496 ORTHO05D002787 9.0e-42 176.0 230 52.2
CAN.G134.148 Capsicum annuum HOM05D002048 ORTHO05D002146 1.2e-41 175.6 267 53.6
CAN.G2177.2 Capsicum annuum HOM05D002496 ORTHO05D002787 2.8e-35 154.5 287 40.8
Psat0s11647g0040 Pisum sativum HOM05D002496 ORTHO05D002787 6.9e-34 149.8 106 68.9
CAN.G309.135 Capsicum annuum HOM05D002496 ORTHO05D002787 9.0e-34 149.4 224 44.6
CAN.G309.103 Capsicum annuum HOM05D002496 ORTHO05D002787 2.0e-33 148.3 204 50.0
CAN.G575.1 Capsicum annuum HOM05D002496 ORTHO05D002787 6.5e-32 143.3 97 78.4
SHI31315 Sapria himalayana HOM05D002496 ORTHO05D002787 3.2e-31 141.0 319 44.5
CAN.G108.57 Capsicum annuum HOM05D002496 ORTHO05D002787 2.7e-30 137.9 97 75.3
CAN.G309.100 Capsicum annuum HOM05D002496 ORTHO05D002787 1.0e-29 136.0 323 36.2
CAN.G134.151 Capsicum annuum HOM05D002496 ORTHO05D002787 1.8e-29 135.2 204 48.0
Psat7g106000 Pisum sativum HOM05D002496 ORTHO05D002787 2.3e-29 134.8 186 43.0
CAN.G309.110 Capsicum annuum HOM05D002496 ORTHO05D002787 5.1e-29 133.7 284 39.1
CAN.G309.125 Capsicum annuum HOM05D002496 ORTHO05D002787 2.5e-28 131.3 260 40.4
CAN.G309.107 Capsicum annuum HOM05D002496 ORTHO05D002787 1.4e-23 115.5 247 40.1
CAN.G1353.3 Capsicum annuum HOM05D002496 ORTHO05D002787 4.2e-23 114.0 313 32.9
CAN.G1563.1 Capsicum annuum HOM05D002496 ORTHO05D002787 4.2e-23 114.0 201 42.8
CAN.G1579.2 Capsicum annuum HOM05D002518 ORTHO05D002630 3.9e-21 107.5 179 47.5
CAN.G1353.22 Capsicum annuum HOM05D002496 ORTHO05D002787 6.7e-21 106.7 212 42.9
CAN.G134.142 Capsicum annuum HOM05D002496 ORTHO05D002787 8.7e-21 106.3 267 36.3
CAN.G8.32 Capsicum annuum HOM05D002496 ORTHO05D002787 2.5e-20 104.8 181 41.4
Lsat_1_v5_gn_7_65640 Lactuca sativa HOM05D002496 ORTHO05D002787 4.3e-20 104.0 174 40.8
CAN.G1353.10 Capsicum annuum HOM05D002496 ORTHO05D002787 2.2e-19 101.7 212 37.7
PSO478G3224 Papaver somniferum HOM05D002496 ORTHO05D002787 2.8e-19 101.3 137 50.4
CAN.G134.146 Capsicum annuum HOM05D002518 ORTHO05D002630 1.1e-18 99.4 194 41.8
CAN.G309.126 Capsicum annuum HOM05D002496 ORTHO05D002787 8.5e-16 89.7 109 57.8
CAN.G309.144 Capsicum annuum HOM05D002496 ORTHO05D002146 1.9e-15 88.6 110 57.3
CAN.G1353.27 Capsicum annuum HOM05D002496 ORTHO05D002787 5.5e-15 87.0 193 37.3
Lsat_1_v5_gn_2_54100 Lactuca sativa HOM05D002496 ORTHO05D003550 3.6e-14 84.3 95 55.8
CAN.G309.132 Capsicum annuum HOM05D002496 ORTHO05D002787 1.0e-13 82.8 160 41.9
CAN.G309.124 Capsicum annuum HOM05D002496 ORTHO05D002787 3.9e-13 80.9 109 58.7
CAN.G743.3 Capsicum annuum HOM05D002496 ORTHO05D002787 9.7e-12 76.3 302 32.5
CAN.G134.141 Capsicum annuum HOM05D002518 ORTHO05D002630 1.3e-11 75.9 95 64.2
Lsat_1_v5_gn_8_87720 Lactuca sativa HOM05D002496 ORTHO05D002787 2.8e-11 74.7 100 47.0
CAN.G2101.1 Capsicum annuum HOM05D002496 ORTHO05D002787 3.7e-11 74.3 94 55.3
CAN.G309.143 Capsicum annuum HOM05D002496 ORTHO05D002630 6.3e-11 73.6 222 33.3
QL03p015964 Quercus lobata HOM05D002496 ORTHO05D002787 6.3e-11 73.6 43 74.4
CAN.G225.19 Capsicum annuum HOM05D002496 ORTHO05D002787 2.0e-09 68.6 106 52.8
CAN.G309.109 Capsicum annuum HOM05D002048 ORTHO05D002146 4.5e-09 67.4 109 53.2
CAN.G309.121 Capsicum annuum HOM05D002496 ORTHO05D002787 7.2e-07 60.1 97 46.4
CAN.G309.114 Capsicum annuum HOM05D002496 ORTHO05D002787 2.7e-06 58.2 100 44.0
CAN.G2314.3 Capsicum annuum HOM05D002496 ORTHO05D002787 6.1e-06 57.0 61 44.3
CAN.G309.141 Capsicum annuum HOM05D002518 ORTHO05D002630 6.1e-06 57.0 44 63.6


User provided reference genes

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