Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_16929 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 1.5e-56 222.6 115 100.0
SEGI_09266 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 4.9e-47 191.0 98 100.0
Aqoxy2G03638 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 5.5e-38 161.0 110 78.2
TAR636G3439 Trochodendron aralioides HOM05D004104 ORTHO05D004755 9.3e-38 160.2 98 81.6
CDE04G2476 Ceratophyllum demersum HOM05D004104 ORTHO05D004755 2.1e-37 159.1 98 80.6
PSO357G0016 Papaver somniferum HOM05D004104 ORTHO05D004755 2.7e-37 158.7 122 71.3
Aqoxy2G03648 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 4.6e-37 157.9 110 76.4
PSO170G1063 Papaver somniferum HOM05D004104 ORTHO05D004755 1.0e-36 156.8 122 70.5
CSS0037223 Camellia sinensis var. sinensis HOM05D004104 ORTHO05D004755 2.3e-36 155.6 104 75.0
Atru.chr5.1672 Acer truncatum HOM05D004104 ORTHO05D004755 3.9e-36 154.8 98 78.6
QL09p038638 Quercus lobata HOM05D004104 ORTHO05D004755 8.7e-36 153.7 98 78.6
Nn3g19649 Nelumbo nucifera HOM05D004104 ORTHO05D004755 1.1e-35 153.3 98 77.6
TAR365G1233 Trochodendron aralioides HOM05D004104 ORTHO05D004755 1.1e-35 153.3 97 78.4
Thecc.01G258800 Theobroma cacao HOM05D004104 ORTHO05D004755 1.5e-35 152.9 107 73.8
Cpa.g.sc50.23 Carica papaya HOM05D004104 ORTHO05D004755 2.5e-35 152.1 98 78.6
COL.COLO4_05896 Corchorus olitorius HOM05D005758 ORTHO05D007218 2.5e-35 152.1 110 71.8
Sabra02G0031000 Salix brachista HOM05D004104 ORTHO05D004755 2.5e-35 152.1 98 77.6
PGSC0003DMG400010299 Solanum tuberosum HOM05D004104 ORTHO05D004755 3.3e-35 151.8 114 70.2
Potri.002G038700 Populus trichocarpa HOM05D004104 ORTHO05D004755 4.3e-35 151.4 98 78.6
Dinv27050 Davidia involucrata HOM05D004104 ORTHO05D004755 5.6e-35 151.0 98 77.6
SGA_v2.0_scaffold138G35232 Striga asiatica HOM05D000374 ORTHO05D000238 5.6e-35 151.0 113 72.6
Manes.12G032000 Manihot esculenta HOM05D004104 ORTHO05D004755 7.4e-35 150.6 98 77.6
TWI12G1345 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 7.4e-35 150.6 98 76.5
CiPaw.01G185000 Carya illinoinensis HOM05D004104 ORTHO05D004755 9.6e-35 150.2 114 71.1
Solyc09g072580.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 9.6e-35 150.2 114 69.3
Sopen09g028390 Solanum pennellii HOM05D004104 ORTHO05D004755 9.6e-35 150.2 114 69.3
COL.COLO4_15874 Corchorus olitorius HOM05D004104 ORTHO05D004755 1.3e-34 149.8 114 71.1
Rhsim01G0264300 Rhododendron simsii HOM05D004104 ORTHO05D004755 1.3e-34 149.8 114 70.2
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 1.3e-34 149.8 118 72.0
Gohir.A08G190000 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.6e-34 149.4 102 74.5
Gohir.D08G208500 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.6e-34 149.4 102 74.5
Gorai.004G220900 Gossypium raimondii HOM05D004104 ORTHO05D004755 1.6e-34 149.4 102 74.5
TPR.G24709 Trifolium pratense HOM05D004104 ORTHO05D004755 1.6e-34 149.4 98 77.6
Cc06_g07960 Coffea canephora HOM05D004104 ORTHO05D004755 2.1e-34 149.1 114 69.3
Lj5g0006581 Lotus japonicus HOM05D004104 ORTHO05D004755 2.1e-34 149.1 98 77.6
Glyma.10G036900 Glycine max HOM05D004104 ORTHO05D004755 2.8e-34 148.7 98 76.5
Nitab4.5_0009483g0030 Nicotiana tabacum HOM05D004104 ORTHO05D004755 2.8e-34 148.7 98 76.5
Actinidia25786 Actinidia chinensis HOM05D004104 ORTHO05D004755 3.7e-34 148.3 114 67.5
Ca_09682_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 3.7e-34 148.3 98 76.5
Lalb_Chr21g0313851 Lupinus albus HOM05D004104 ORTHO05D004755 3.7e-34 148.3 98 76.5
Medtr1g069925 Medicago truncatula HOM05D004104 ORTHO05D004755 3.7e-34 148.3 98 76.5
Phvul.007G193100 Phaseolus vulgaris HOM05D004104 ORTHO05D004755 3.7e-34 148.3 98 76.5
Psat6g055120 Pisum sativum HOM05D004104 ORTHO05D004755 3.7e-34 148.3 98 76.5
VMungo0720G2373 Vigna mungo HOM05D004104 ORTHO05D004755 3.7e-34 148.3 98 76.5
Nitab4.5_0000470g0160 Nicotiana tabacum HOM05D004104 ORTHO05D004755 4.8e-34 147.9 114 69.3
Potri.005G223900 Populus trichocarpa HOM05D004104 ORTHO05D004755 4.8e-34 147.9 98 76.5
SGA_v2.0_scaffold1G00613 Striga asiatica HOM05D004104 ORTHO05D004755 4.8e-34 147.9 113 71.7
CiPaw.03G263800 Carya illinoinensis HOM05D004104 ORTHO05D004755 6.2e-34 147.5 98 75.5
SalBow4G1878 Salvia bowleyana HOM05D004104 ORTHO05D004755 8.1e-34 147.1 122 65.6
GSVIVG01027809001 Vitis vinifera HOM05D004104 ORTHO05D004755 8.1e-34 147.1 98 75.5
arahy.Tifrunner.gnm1.ann1.QEJR01 Arachis hypogaea HOM05D004104 ORTHO05D004755 1.4e-33 146.4 98 74.5
MSTRG.18320 Avicennia marina HOM05D004104 ORTHO05D004755 1.8e-33 146.0 122 66.4
Prupe.8G224100 Prunus persica HOM05D004104 ORTHO05D004755 1.8e-33 146.0 98 74.5
Duzib211G0552 Durio zibethinus HOM05D004104 ORTHO05D004755 2.4e-33 145.6 107 69.2
TPR.G6322 Trifolium pratense HOM05D004104 ORTHO05D004755 3.1e-33 145.2 98 75.5
Atru.chr4.2063 Acer truncatum HOM05D004104 ORTHO05D004755 4.0e-33 144.8 98 76.5
ClCG09G007780 Citrullus lanatus HOM05D000113 ORTHO05D004634 4.0e-33 144.8 98 74.5
Haze_24627 Corylus avellana HOM05D005758 ORTHO05D007218 4.0e-33 144.8 98 74.5
Manes.13G033700 Manihot esculenta HOM05D004104 ORTHO05D004755 4.0e-33 144.8 90 80.0
MSTRG.21496 Avicennia marina HOM05D004104 ORTHO05D004755 5.3e-33 144.4 113 69.9
Ca_09886_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 5.3e-33 144.4 94 77.7
Eucgr.K03263 Eucalyptus grandis HOM05D004104 ORTHO05D004755 5.3e-33 144.4 98 74.5
THA.LOC104822244 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 5.3e-33 144.4 123 64.2
FAN15G0777 Fragaria x ananassa HOM05D005758 ORTHO05D007218 9.0e-33 143.7 97 76.3
FAN27G1683 Fragaria x ananassa HOM05D005758 ORTHO05D007218 9.0e-33 143.7 97 76.3
CANSAT01G3088 Cannabis sativa HOM05D004104 ORTHO05D004755 1.2e-32 143.3 97 74.2
CsaV3_7G027350 Cucumis sativus L. HOM05D004104 ORTHO05D004755 1.2e-32 143.3 98 73.5
Migut.D00423 Erythranthe guttata HOM05D004104 ORTHO05D004755 1.2e-32 143.3 122 65.6
Gohir.D02G045400 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.2e-32 143.3 112 67.0
Gorai.005G050100 Gossypium raimondii HOM05D004104 ORTHO05D004755 1.2e-32 143.3 112 67.0
Dinv29861 Davidia involucrata HOM05D004104 ORTHO05D004755 1.5e-32 142.9 92 77.2
Duzib052G0511 Durio zibethinus HOM05D004104 ORTHO05D004755 1.5e-32 142.9 98 74.5
Gohir.A02G039300 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.5e-32 142.9 124 62.1
PGR044G0499 Punica granatum HOM05D004104 ORTHO05D004755 1.5e-32 142.9 123 62.6
AT4G14385 Arabidopsis thaliana HOM05D004104 ORTHO05D004755 2.0e-32 142.5 111 67.6
arahy.Tifrunner.gnm1.ann1.0Z487T Arachis hypogaea HOM05D000348 ORTHO05D000244 2.0e-32 142.5 98 73.5
FAN20G0124 Fragaria x ananassa HOM05D004104 ORTHO05D004755 2.0e-32 142.5 97 75.3
Mapoly0055s0054 Marchantia polymorpha HOM05D004104 ORTHO05D004755 2.6e-32 142.1 102 71.6
Oeu011497.1 Olea europaea HOM05D004104 ORTHO05D004755 2.6e-32 142.1 99 72.7
THA.LOC104825278 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 2.6e-32 142.1 90 77.8
Sabra05G0172700 Salix brachista HOM05D004104 ORTHO05D004755 3.4e-32 141.7 89 80.9
Thecc.04G255000 Theobroma cacao HOM05D004104 ORTHO05D004755 3.4e-32 141.7 98 73.5
Gohir.A07G212800 Gossypium hirsutum HOM05D004104 ORTHO05D004755 4.5e-32 141.4 116 68.1
HanXRQChr03g0091411 Helianthus annuus HOM05D004104 ORTHO05D004755 4.5e-32 141.4 98 72.4
MD10G1184400 Malus domestica HOM05D004104 ORTHO05D004755 4.5e-32 141.4 94 75.5
Sp7g12470 Schrenkiella parvula HOM05D004104 ORTHO05D004755 4.5e-32 141.4 98 72.4
Lsat_1_v5_gn_3_120420 Lactuca sativa HOM05D004104 ORTHO05D004755 7.6e-32 140.6 98 71.4
RcHm_v2.0_Chr6g0288171 Rosa chinensis HOM05D004104 ORTHO05D004755 7.6e-32 140.6 92 78.3
AL7G41830 Arabidopsis lyrata HOM05D004104 ORTHO05D004755 1.0e-31 140.2 111 66.7
arahy.Tifrunner.gnm1.ann1.6K1PAL Arachis hypogaea HOM05D000348 ORTHO05D000244 1.0e-31 140.2 97 73.2
Sed0024271 Sechium edule HOM05D004104 ORTHO05D004755 1.0e-31 140.2 98 71.4
EL10Ac5g10403 Beta vulgaris HOM05D004104 ORTHO05D004755 1.3e-31 139.8 111 64.0
Pp3c8_15220 Physcomitrium patens HOM05D004104 ORTHO05D004755 1.7e-31 139.4 107 69.2
CARHR220610 Cardamine hirsuta HOM05D004104 ORTHO05D004755 2.2e-31 139.0 98 70.4
Haze_11377 Corylus avellana HOM05D004104 ORTHO05D004755 2.2e-31 139.0 98 71.4
GSVIVG01028325001 Vitis vinifera HOM05D004104 ORTHO05D004755 2.2e-31 139.0 111 65.8
Carub.0007s2785 Capsella rubella HOM05D004104 ORTHO05D004755 2.9e-31 138.7 98 70.4
ECA240G4332 Erigeron canadensis HOM05D004104 ORTHO05D004755 2.9e-31 138.7 98 71.4
Thhalv10026437m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 2.9e-31 138.7 98 70.4
A04p07650 Brassica napus HOM05D004104 ORTHO05D004755 3.8e-31 138.3 111 65.8
BolC4t25712H Brassica oleracea HOM05D004104 ORTHO05D004755 3.8e-31 138.3 111 65.8
BcaC02g09319 Brassica carinata HOM05D004104 ORTHO05D004755 4.9e-31 137.9 98 70.4
C04p41340 Brassica napus HOM05D004104 ORTHO05D004755 4.9e-31 137.9 98 70.4
BraA04t16456Z Brassica rapa HOM05D004104 ORTHO05D004755 4.9e-31 137.9 98 70.4
Hund11888 Selenicereus undatus HOM05D004104 ORTHO05D004755 4.9e-31 137.9 103 69.9
Ah.13g072460 Amaranthus hybridus HOM05D004104 ORTHO05D004755 6.5e-31 137.5 111 65.8
QL06p017873 Quercus lobata HOM05D004104 ORTHO05D004755 6.5e-31 137.5 112 67.0
unitig_21.g20174 Utricularia gibba HOM05D004104 ORTHO05D004755 6.5e-31 137.5 108 69.4
AUR62011875 Chenopodium quinoa HOM05D004104 ORTHO05D004755 1.1e-30 136.7 111 64.0
FvH4_2g21510 Fragaria vesca HOM05D005758 ORTHO05D007218 1.1e-30 136.7 89 78.7
Cc03_g05510 Coffea canephora HOM05D004104 ORTHO05D004755 1.4e-30 136.3 102 69.6
Manes.03G164300 Manihot esculenta HOM05D004104 ORTHO05D004755 1.4e-30 136.3 98 71.4
Pp3c24_15450 Physcomitrium patens HOM05D004104 ORTHO05D004755 1.4e-30 136.3 113 63.7
Aa31LG9G2930 Aethionema arabicum HOM05D004104 ORTHO05D004755 1.9e-30 136.0 98 69.4
Duzib151G0362 Durio zibethinus HOM05D004104 ORTHO05D004755 1.9e-30 136.0 102 71.6
Os01g0233400 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 2.5e-30 135.6 104 65.4
Os12g0298600 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 2.5e-30 135.6 104 65.4
MD05G1197800 Malus domestica HOM05D004104 ORTHO05D004755 3.2e-30 135.2 99 71.7
SalBow3G2247 Salvia bowleyana HOM05D004104 ORTHO05D004755 4.2e-30 134.8 113 65.5
BcaB02g08611 Brassica carinata HOM05D004104 ORTHO05D004755 5.5e-30 134.4 92 72.8
Glyma.13G123300 Glycine max HOM05D004104 ORTHO05D004755 7.1e-30 134.0 88 76.1
HanXRQChr04g0112651 Helianthus annuus HOM05D004104 ORTHO05D004755 7.1e-30 134.0 111 61.3
CBR_g31961 Chara braunii HOM05D004104 ORTHO05D004755 9.3e-30 133.7 108 63.9
Ciclev10023660m.g Citrus clementina HOM05D004104 ORTHO05D004755 1.2e-29 133.3 126 61.9
Hund02913 Selenicereus undatus HOM05D004104 ORTHO05D004755 1.6e-29 132.9 116 60.3
Solyc09g090120.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 1.6e-29 132.9 108 66.7
Sopen09g033030 Solanum pennellii HOM05D004104 ORTHO05D004755 1.6e-29 132.9 108 66.7
Gorai.001G253400 Gossypium raimondii HOM05D004104 ORTHO05D004755 2.1e-29 132.5 124 62.9
AagrBONN_evm.TU.Sc2ySwM_228.2514 Anthoceros agrestis HOM05D004104 ORTHO05D004755 1.0e-28 130.2 110 66.4
Migut.G00520 Erythranthe guttata HOM05D004104 ORTHO05D004755 1.0e-28 130.2 107 65.4
Nitab4.5_0001005g0090 Nicotiana tabacum HOM05D004104 ORTHO05D004755 1.0e-28 130.2 108 64.8
Lsat_1_v5_gn_8_92980 Lactuca sativa HOM05D004104 ORTHO05D004755 1.3e-28 129.8 110 63.6
Sc24g0003130 Simmondsia chinensis HOM05D004104 ORTHO05D004755 1.8e-28 129.4 90 70.0
Actinidia01846 Actinidia chinensis HOM05D004104 ORTHO05D004755 2.3e-28 129.0 98 64.3
Gohir.D07G218900 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.3e-28 129.0 95 71.6
Rhsim02G0037300 Rhododendron simsii HOM05D004104 ORTHO05D004755 2.3e-28 129.0 111 60.4
Nitab4.5_0000044g0340 Nicotiana tabacum HOM05D004104 ORTHO05D004755 3.0e-28 128.6 108 64.8
TWI18G1001 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 3.0e-28 128.6 134 55.2
Ciclev10006103m.g Citrus clementina HOM05D004104 ORTHO05D004755 3.9e-28 128.3 111 62.2
vmacro15441 Vaccinium macrocarpon HOM05D004104 ORTHO05D004755 3.9e-28 128.3 96 67.7
AagrBONN_evm.TU.Sc2ySwM_368.1944 Anthoceros agrestis HOM05D004104 ORTHO05D004755 1.9e-27 125.9 109 65.1
EL10Ac3g05008 Beta vulgaris HOM05D004104 ORTHO05D004755 2.5e-27 125.6 92 68.5
MBI10_g37181_MAGBIO Magnolia biondii HOM05D004104 ORTHO05D004755 1.3e-26 123.2 72 84.7
AUR62002135 Chenopodium quinoa HOM05D004104 ORTHO05D004755 1.6e-26 122.9 90 70.0
AUR62015575 Chenopodium quinoa HOM05D004104 ORTHO05D004755 2.1e-26 122.5 116 58.6
MSTRG.9892 Avicennia marina HOM05D004104 ORTHO05D004755 2.8e-26 122.1 97 70.1
ECA236G2125 Erigeron canadensis HOM05D004104 ORTHO05D004755 2.8e-26 122.1 98 65.3
THA.LOC104825277 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 6.3e-26 120.9 78 74.4
Ah.04g155820 Amaranthus hybridus HOM05D004104 ORTHO05D004755 1.8e-25 119.4 122 53.3
Peaxi162Scf00855g00233 Petunia axillaris HOM05D004104 ORTHO05D004755 5.3e-25 117.9 135 53.3
HPP92_008311 Vanilla planifolia HOM05D004104 ORTHO05D004755 6.9e-25 117.5 103 58.3
HPP92_004791 Vanilla planifolia HOM05D004104 ORTHO05D004755 3.4e-24 115.2 82 72.0
Lj1A66T60 Lonicera japonica HOM05D004104 ORTHO05D004755 8.4e-23 110.5 112 56.2
MCO10G151 Micromonas commoda HOM05D004104 ORTHO05D004755 9.3e-22 107.1 77 70.1
Thhalv10002280m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 2.1e-21 105.9 90 65.6
MELO3C015732.2 Cucumis melo HOM05D004104 ORTHO05D004755 6.1e-21 104.4 161 41.6
Ah.11g049720 Amaranthus hybridus HOM05D004104 ORTHO05D004755 2.3e-20 102.4 76 67.1
Duzib138G1233 Durio zibethinus HOM05D004104 ORTHO05D004755 2.3e-20 102.4 69 72.5
arahy.Tifrunner.gnm1.ann1.2HR6HW Arachis hypogaea HOM05D004104 ORTHO05D004755 5.7e-19 97.8 65 70.8
Dinv34620 Davidia involucrata HOM05D004104 ORTHO05D004755 1.6e-18 96.3 64 71.9
Actinidia32304 Actinidia chinensis HOM05D004104 ORTHO05D004755 2.2e-18 95.9 85 58.8
Thhalv10029502m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 8.2e-18 94.0 89 58.4
SGA_v2.0_scaffold67G22747 Striga asiatica HOM05D004104 ORTHO05D004755 2.4e-17 92.4 98 52.0
PRCOL_00002727 Prasinoderma coloniale HOM05D004104 ORTHO05D004755 3.1e-17 92.0 85 55.3
Zm00001eb188390 Zea mays HOM05D004104 ORTHO05D004755 1.4e-14 83.2 60 66.7
Gohir.D03G080833 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.6e-13 79.7 60 65.0
Gorai.003G083000 Gossypium raimondii HOM05D004104 ORTHO05D004755 6.1e-13 77.8 60 65.0
Peaxi162Scf00543g00310 Petunia axillaris HOM05D004104 ORTHO05D004755 2.3e-12 75.9 108 50.0
arahy.Tifrunner.gnm1.ann1.A8QM82 Arachis hypogaea HOM05D004104 ORTHO05D004755 4.3e-11 71.6 67 52.2
PGSC0003DMG400017224 Solanum tuberosum HOM05D004104 ORTHO05D004755 9.7e-11 70.5 51 68.6
THA.LOC104825261 Tarenaya hassleriana HOM05D013951 ORTHO05D021024 9.7e-11 70.5 41 80.5
Actinidia11346 Actinidia chinensis HOM05D004104 ORTHO05D004755 2.4e-09 65.9 62 51.6
CAN.G896.9 Capsicum annuum HOM05D004104 ORTHO05D004755 1.2e-08 63.5 49 69.4
Cre06.g291200 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 1.7e-07 59.7 75 45.3
Cre07.g328450 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 1.7e-07 59.7 76 44.7
SHI09794 Sapria himalayana HOM05D004104 ORTHO05D004755 2.2e-07 59.3 59 55.9


User provided reference genes

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