Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_16638 Sequoiadendron giganteum HOM05D004594 ORTHO05D005225 0.0e+00 1764.2 1416 100.0
Mapoly0102s0024 Marchantia polymorpha HOM05D004594 ORTHO05D005225 1.3e-125 455.7 1394 36.2
Pp3c12_12730 Physcomitrium patens HOM05D004594 ORTHO05D005225 1.0e-117 429.5 1425 30.1
Aqoxy3G03454 Aquilegia oxysepala HOM05D004594 ORTHO05D005225 3.3e-108 397.9 589 48.7
CiPaw.05G132100 Carya illinoinensis HOM05D004594 ORTHO05D005225 8.0e-107 393.3 667 45.6
Ciclev10030522m.g Citrus clementina HOM05D004594 ORTHO05D005225 2.0e-105 388.7 664 45.9
DCAR_013185 Daucus carota HOM05D004594 ORTHO05D005225 7.5e-105 386.7 1487 35.0
CANSAT64G0453 Cannabis sativa HOM05D004594 ORTHO05D005225 3.2e-103 381.3 1454 33.6
Cfa008959 Carpinus fangiana HOM05D004594 ORTHO05D005225 1.3e-101 375.9 1431 35.2
ATR0564G229 Amborella trichopoda HOM05D004594 ORTHO05D005225 1.7e-101 375.6 1440 29.3
Nn1g04524 Nelumbo nucifera HOM05D004594 ORTHO05D005225 2.3e-101 375.2 1446 35.0
Manes.01G034200 Manihot esculenta HOM05D004594 ORTHO05D005225 5.0e-101 374.0 1457 32.7
Phvul.003G045700 Phaseolus vulgaris HOM05D004594 ORTHO05D005225 8.6e-101 373.2 1507 31.5
MBI06_g33529_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 1.1e-100 372.9 676 43.5
Manes.05G104800 Manihot esculenta HOM05D004594 ORTHO05D005225 1.1e-100 372.9 1488 34.4
QL03p068116 Quercus lobata HOM05D004594 ORTHO05D005225 7.3e-100 370.2 1422 35.4
Atru.chr11.1750 Acer truncatum HOM05D004594 ORTHO05D005225 3.6e-99 367.9 703 43.1
Dinv02961 Davidia involucrata HOM05D004594 ORTHO05D005225 3.6e-99 367.9 1448 31.8
MD16G1069300 Malus domestica HOM05D004594 ORTHO05D005225 3.6e-99 367.9 1462 30.6
CiPaw.06G087400 Carya illinoinensis HOM05D004594 ORTHO05D005225 2.3e-98 365.2 1417 31.1
PSO832G1080 Papaver somniferum HOM05D004594 ORTHO05D005225 4.0e-98 364.4 1455 31.5
Duzib248G1210 Durio zibethinus HOM05D004594 ORTHO05D005225 5.2e-98 364.0 1420 30.6
FAN07G2218 Fragaria x ananassa HOM05D004594 ORTHO05D005225 8.9e-98 363.2 1415 33.6
TPR.G34709 Trifolium pratense HOM05D004594 ORTHO05D005225 2.0e-97 362.1 690 43.5
Haze_11988 Corylus avellana HOM05D004594 ORTHO05D005225 2.6e-97 361.7 1507 34.2
TWI75G1472 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 3.4e-97 361.3 1424 32.5
Glyma.02G109900 Glycine max HOM05D004594 ORTHO05D005225 4.4e-97 360.9 1526 34.0
FAN22G0563 Fragaria x ananassa HOM05D004594 ORTHO05D005225 7.5e-97 360.1 1408 33.2
Carub.0005s0198 Capsella rubella HOM05D004594 ORTHO05D005225 3.7e-96 357.8 1304 35.0
TWI79G0308 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 6.4e-96 357.1 1414 34.9
Ca_04825_v3 Cicer arietinum L. HOM05D004594 ORTHO05D005225 1.1e-95 356.3 1514 32.6
Thecc.02G342500 Theobroma cacao HOM05D004594 ORTHO05D005225 1.9e-95 355.5 1425 34.2
FvH4_4g31060 Fragaria vesca HOM05D004594 ORTHO05D005225 2.4e-95 355.1 1405 34.0
ClCG09G021930 Citrullus lanatus HOM05D004594 ORTHO05D005225 3.2e-95 354.8 1461 31.0
FAN17G1193 Fragaria x ananassa HOM05D004594 ORTHO05D005225 2.7e-94 351.7 1401 33.5
CsaV3_5G025180 Cucumis sativus L. HOM05D004594 ORTHO05D005225 6.0e-94 350.5 1488 33.8
Nitab4.5_0001419g0070 Nicotiana tabacum HOM05D004594 ORTHO05D005225 6.0e-94 350.5 672 42.6
Pp3c4_10880 Physcomitrium patens HOM05D004594 ORTHO05D005225 6.0e-94 350.5 1423 29.2
Psat2g116320 Pisum sativum HOM05D004594 ORTHO05D005225 6.0e-94 350.5 1508 33.7
Lj2g0016635 Lotus japonicus HOM05D004594 ORTHO05D005225 1.0e-93 349.7 651 43.3
Potri.010G166100 Populus trichocarpa HOM05D004594 ORTHO05D005225 3.9e-93 347.8 1499 30.4
Nitab4.5_0000129g0280 Nicotiana tabacum HOM05D004594 ORTHO05D005225 6.6e-93 347.1 688 42.7
Sp2g14100 Schrenkiella parvula HOM05D004594 ORTHO05D005225 2.5e-92 345.1 1280 35.8
GSVIVG01019950001 Vitis vinifera HOM05D004594 ORTHO05D005225 2.5e-92 345.1 1437 34.6
AL5G12800 Arabidopsis lyrata HOM05D004594 ORTHO05D005225 5.6e-92 344.0 1404 35.8
Medtr5g042000 Medicago truncatula HOM05D004594 ORTHO05D005225 5.6e-92 344.0 589 45.3
MELO3C002967.2 Cucumis melo HOM05D004594 ORTHO05D005225 1.2e-91 342.8 1485 34.3
Sed0022637 Sechium edule HOM05D004594 ORTHO05D005225 1.2e-91 342.8 1463 31.4
CDE07G1889 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 2.1e-91 342.0 1299 29.8
PSO013G0146 Papaver somniferum HOM05D004594 ORTHO05D005225 2.1e-91 342.0 1446 30.6
Ah.13g075020 Amaranthus hybridus HOM05D004594 ORTHO05D005225 2.8e-91 341.7 698 43.7
A09p24110 Brassica napus HOM05D004594 ORTHO05D005225 3.6e-91 341.3 1275 39.6
BraA09t38011Z Brassica rapa HOM05D004594 ORTHO05D005225 3.6e-91 341.3 1275 39.6
CARHR145490 Cardamine hirsuta HOM05D004594 ORTHO05D005225 6.2e-91 340.5 1333 33.2
RcHm_v2.0_Chr4g0439441 Rosa chinensis HOM05D004594 ORTHO05D005225 8.1e-91 340.1 1431 31.9
arahy.Tifrunner.gnm1.ann1.8R27D6 Arachis hypogaea HOM05D004594 ORTHO05D005225 1.4e-90 339.3 1538 30.6
C09p31000 Brassica napus HOM05D004594 ORTHO05D005225 4.0e-90 337.8 1274 37.7
CAN.G194.5 Capsicum annuum HOM05D004594 ORTHO05D005225 4.0e-90 337.8 1429 30.3
Glyma.01G051400 Glycine max HOM05D004594 ORTHO05D005225 4.0e-90 337.8 1527 31.6
FAN12G0764 Fragaria x ananassa HOM05D004594 ORTHO05D005225 5.2e-90 337.4 1430 34.0
Rhsim09G0077000 Rhododendron simsii HOM05D004594 ORTHO05D005225 8.9e-90 336.7 695 39.1
TAR371G0293 Trochodendron aralioides HOM05D004594 ORTHO05D005225 1.2e-89 336.3 1420 31.3
Eucgr.G02485 Eucalyptus grandis HOM05D004594 ORTHO05D005225 1.5e-89 335.9 1459 31.0
AUR62035898 Chenopodium quinoa HOM05D004594 ORTHO05D005225 2.0e-89 335.5 1445 29.9
BcaC04g21505 Brassica carinata HOM05D004594 ORTHO05D005225 3.4e-89 334.7 1276 37.6
Migut.E00588 Erythranthe guttata HOM05D004594 ORTHO05D005225 4.4e-89 334.3 1347 33.3
Hund25219 Selenicereus undatus HOM05D004594 ORTHO05D005225 4.4e-89 334.3 1428 32.7
BcaB07g30683 Brassica carinata HOM05D004594 ORTHO05D005225 1.3e-88 332.8 1374 38.0
Cc00_g08470 Coffea canephora HOM05D004594 ORTHO05D005225 3.7e-88 331.3 1437 29.2
VMungo1215G3128 Vigna mungo HOM05D004594 ORTHO05D005225 3.7e-88 331.3 1508 31.3
AT2G03150 Arabidopsis thaliana HOM05D004594 ORTHO05D005225 4.9e-88 330.9 1293 36.7
TAR629G1990 Trochodendron aralioides HOM05D004594 ORTHO05D005225 1.4e-87 329.3 1322 30.6
Lalb_Chr10g0098431 Lupinus albus HOM05D004594 ORTHO05D005225 3.2e-87 328.2 1522 31.1
Peaxi162Scf00329g00617 Petunia axillaris HOM05D004594 ORTHO05D005225 4.1e-87 327.8 1422 32.4
Sopen04g003850 Solanum pennellii HOM05D004594 ORTHO05D005225 4.1e-87 327.8 1430 28.5
Gohir.D04G191200 Gossypium hirsutum HOM05D004594 ORTHO05D005225 2.1e-86 325.5 1408 33.5
Gorai.012G186600 Gossypium raimondii HOM05D004594 ORTHO05D005225 2.1e-86 325.5 1451 32.1
Sc11g0002090 Simmondsia chinensis HOM05D004594 ORTHO05D005225 4.6e-86 324.3 602 43.9
BolC9t55959H Brassica oleracea HOM05D004594 ORTHO05D005225 1.0e-85 323.2 1328 38.2
Oeu044046.4 Olea europaea HOM05D004594 ORTHO05D005225 1.1e-84 319.7 1256 30.0
EL10Ac3g06731 Beta vulgaris HOM05D004594 ORTHO05D005225 1.9e-84 318.9 1453 30.4
Solyc04g008680.4 Solanum lycopersicum HOM05D004594 ORTHO05D005225 1.6e-83 315.8 1407 29.9
PGR119G1944 Punica granatum HOM05D004594 ORTHO05D005225 4.7e-83 314.3 1406 32.2
Zm00001eb384230 Zea mays HOM05D004594 ORTHO05D005225 1.8e-82 312.4 1443 30.9
Aa31LG2G7300 Aethionema arabicum HOM05D004594 ORTHO05D005225 2.4e-82 312.0 672 40.2
AUR62035342 Chenopodium quinoa HOM05D004594 ORTHO05D005225 2.4e-82 312.0 1381 29.9
Actinidia11790 Actinidia chinensis HOM05D004594 ORTHO05D005225 8.9e-82 310.1 1503 30.0
AagrBONN_evm.TU.Sc2ySwM_340.1878 Anthoceros agrestis HOM05D004594 ORTHO05D005225 3.4e-81 308.1 1353 28.2
SGA_v2.0_scaffold140G35452 Striga asiatica HOM05D004594 ORTHO05D005225 9.9e-81 306.6 1426 32.0
SMO172G0003 Selaginella moellendorffii HOM05D004594 ORTHO05D005225 3.8e-80 304.7 1099 33.5
Thhalv10005550m.g Eutrema salsugineum HOM05D004594 ORTHO05D005225 1.0e-77 296.6 1331 39.0
Sabra10G0126400 Salix brachista HOM05D004594 ORTHO05D005225 1.3e-77 296.2 1579 30.0
THA.LOC104824075 Tarenaya hassleriana HOM05D004594 ORTHO05D005225 2.1e-75 288.9 1374 33.1
Lsat_1_v5_gn_3_33900 Lactuca sativa HOM05D004594 ORTHO05D005225 4.8e-75 287.7 655 40.6
arahy.Tifrunner.gnm1.ann1.KB2NSX Arachis hypogaea HOM05D004594 ORTHO05D005225 6.9e-74 283.9 1594 28.1
Prupe.1G277900 Prunus persica HOM05D004594 ORTHO05D005225 1.5e-73 282.7 1481 29.1
CDE04G0114 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 4.4e-73 281.2 1276 27.7
C02p51140 Brassica napus HOM05D004594 ORTHO05D005225 7.6e-73 280.4 571 37.5
HanXRQChr08g0224741 Helianthus annuus HOM05D004594 ORTHO05D005225 1.7e-72 279.3 1396 33.7
Zm00001eb277410 Zea mays HOM05D004594 ORTHO05D005225 3.8e-72 278.1 1416 32.8
ECA246G2651 Erigeron canadensis HOM05D004594 ORTHO05D005225 4.2e-71 274.6 1435 30.7
HPP92_001998 Vanilla planifolia HOM05D004594 ORTHO05D005225 2.7e-70 271.9 1125 32.1
ECA233G5935 Erigeron canadensis HOM05D004594 ORTHO05D005225 1.7e-69 269.2 1419 29.5
Lsat_1_v5_gn_8_32581 Lactuca sativa HOM05D004594 ORTHO05D005225 1.5e-68 266.2 1365 28.7
SHI24774 Sapria himalayana HOM05D004594 ORTHO05D005225 5.6e-68 264.2 711 31.8
HanXRQChr17g0540651 Helianthus annuus HOM05D004594 ORTHO05D005225 7.4e-68 263.8 1325 35.3
HanXRQChr14g0429131 Helianthus annuus HOM05D004594 ORTHO05D005225 3.6e-67 261.5 1326 35.1
CBR_g5747 Chara braunii HOM05D004594 ORTHO05D005225 1.2e-65 256.5 665 35.9
Gohir.1Z049516 Gossypium hirsutum HOM05D004594 ORTHO05D005225 1.9e-63 249.2 294 44.9
Cpa.g.sc25.130 Carica papaya HOM05D004594 ORTHO05D005225 5.5e-55 221.1 1440 33.0
unitig_52.g17301 Utricularia gibba HOM05D004594 ORTHO05D005225 8.7e-53 213.8 691 34.4
Gohir.A04G146601 Gossypium hirsutum HOM05D004594 ORTHO05D005225 2.6e-49 202.2 564 39.4
HanXRQChr08g0225211 Helianthus annuus HOM05D004594 ORTHO05D005225 1.8e-45 189.5 1009 30.6
Atru.chr11.1748 Acer truncatum HOM05D004594 ORTHO05D005225 1.6e-25 123.2 395 39.0
Lj3E852T1 Lonicera japonica HOM05D004594 ORTHO05D005225 1.6e-25 123.2 100 50.0
CBR_g5749 Chara braunii HOM05D004594 ORTHO05D005225 4.2e-23 115.2 376 36.4
unitig_52.g17300 Utricularia gibba HOM05D004594 ORTHO05D005225 4.7e-22 111.7 402 37.3
Rhsim04G0150600 Rhododendron simsii HOM05D004594 ORTHO05D005225 6.7e-21 107.8 176 37.5
Oeu032954.1 Olea europaea HOM05D004594 ORTHO05D005225 1.3e-19 103.6 93 52.7
Lj3A852T53 Lonicera japonica HOM05D004594 ORTHO05D005225 2.4e-18 99.4 125 44.8
Lj3E852G2 Lonicera japonica HOM05D004594 ORTHO05D005225 1.2e-17 97.1 89 59.6
Gohir.1Z049616 Gossypium hirsutum HOM05D004594 ORTHO05D005225 5.9e-17 94.7 84 54.8
MBI02_g24139_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 3.2e-15 89.0 72 51.4
Os06g0562700 Oryza sativa ssp. japonica HOM05D004594 ORTHO05D005225 9.4e-15 87.4 331 32.9
Oeu034639.1 Olea europaea HOM05D004594 ORTHO05D005225 1.6e-14 86.7 145 43.4
Cre06.g283634 Chlamydomonas reinhardtii HOM05D004594 ORTHO05D005225 2.1e-14 86.3 305 25.9
TPR.G11445 Trifolium pratense HOM05D004594 ORTHO05D005225 6.8e-13 81.3 63 58.7
vmacro10769 Vaccinium macrocarpon HOM05D004594 ORTHO05D005225 1.7e-11 76.6 58 51.7
BolC2t11204H Brassica oleracea HOM05D004594 ORTHO05D005225 3.1e-10 72.4 147 34.7
BcaC03g17185 Brassica carinata HOM05D004594 ORTHO05D005225 9.1e-10 70.9 416 25.7
Lsat_1_v5_gn_3_92661 Lactuca sativa HOM05D004594 ORTHO05D005225 9.1e-10 70.9 65 44.6
HPP92_001999 Vanilla planifolia HOM05D004594 ORTHO05D005225 2.0e-09 69.7 82 48.8
Lsat_1_v5_gn_4_108040 Lactuca sativa HOM05D004594 ORTHO05D005225 4.5e-09 68.6 65 43.1
A02p33250 Brassica napus HOM05D004594 ORTHO05D005225 8.5e-08 64.3 80 42.5
MBI05_g14664_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 7.2e-07 61.2 49 51.0


User provided reference genes

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