Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_16207 Sequoiadendron giganteum HOM05D004772 ORTHO05D006892 2.1e-58 228.8 114 100.0
TAR362G0678 Trochodendron aralioides HOM05D004772 ORTHO05D006892 4.3e-35 151.4 95 76.8
Eucgr.E01101 Eucalyptus grandis HOM05D004772 ORTHO05D006892 5.6e-35 151.0 98 71.4
TWI09G0846 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 4.7e-34 147.9 98 69.4
TWI73G1272 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 6.2e-34 147.5 98 68.4
Pp3c5_10580 Physcomitrium patens HOM05D004772 ORTHO05D006892 8.1e-34 147.1 95 68.4
Dinv29709 Davidia involucrata HOM05D004772 ORTHO05D006892 1.1e-33 146.7 98 70.4
Manes.03G200000 Manihot esculenta HOM05D004772 ORTHO05D006892 1.4e-33 146.4 95 71.6
SHI00201 Sapria himalayana HOM05D004772 ORTHO05D006892 1.4e-33 146.4 97 64.9
Aqoxy5G00804 Aquilegia oxysepala HOM05D004772 ORTHO05D006892 1.8e-33 146.0 102 63.7
CANSAT78G1075 Cannabis sativa HOM05D004772 ORTHO05D006892 1.8e-33 146.0 98 69.4
Cfa015449 Carpinus fangiana HOM05D004772 ORTHO05D006892 1.8e-33 146.0 98 69.4
Hma1.2p1_0078F.1_g040270 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 1.8e-33 146.0 98 69.4
Hma1.2p1_0078F.1_g040280 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 1.8e-33 146.0 98 69.4
CSS0008369 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 2.3e-33 145.6 98 68.4
Duzib151G1106 Durio zibethinus HOM05D004772 ORTHO05D006892 2.3e-33 145.6 98 68.4
Thecc.04G291000 Theobroma cacao HOM05D004772 ORTHO05D006892 2.3e-33 145.6 98 68.4
FAN07G2363 Fragaria x ananassa HOM05D004772 ORTHO05D006892 3.1e-33 145.2 95 71.6
THA.LOC104802592 Tarenaya hassleriana HOM05D004772 ORTHO05D006892 4.0e-33 144.8 98 68.4
Haze_01138 Corylus avellana HOM05D004772 ORTHO05D006892 5.2e-33 144.4 98 67.3
Haze_01142 Corylus avellana HOM05D004772 ORTHO05D006892 5.2e-33 144.4 98 67.3
Nn3g21575 Nelumbo nucifera HOM05D004772 ORTHO05D006892 5.2e-33 144.4 95 72.6
Oeu054008.1 Olea europaea HOM05D004772 ORTHO05D006892 5.2e-33 144.4 98 68.4
GSVIVG01035090001 Vitis vinifera HOM05D004772 ORTHO05D006892 5.2e-33 144.4 95 71.6
MSTRG.24809 Avicennia marina HOM05D004772 ORTHO05D006892 6.8e-33 144.1 98 66.3
Lsat_1_v5_gn_6_76160 Lactuca sativa HOM05D004772 ORTHO05D006892 6.8e-33 144.1 98 66.3
PSO731G0023 Papaver somniferum HOM05D004772 ORTHO05D006892 6.8e-33 144.1 98 70.4
PSO764G0237 Papaver somniferum HOM05D004772 ORTHO05D006892 6.8e-33 144.1 98 70.4
DCAR_027042 Daucus carota HOM05D004772 ORTHO05D006892 8.9e-33 143.7 98 66.3
MD13G1162200 Malus domestica HOM05D004772 ORTHO05D006892 8.9e-33 143.7 98 68.4
Cc03_g01340 Coffea canephora HOM05D004772 ORTHO05D006892 1.2e-32 143.3 95 70.5
Gohir.A09G063500 Gossypium hirsutum HOM05D004772 ORTHO05D006892 1.2e-32 143.3 95 69.5
MD16G1162000 Malus domestica HOM05D004772 ORTHO05D006892 2.0e-32 142.5 98 67.3
Hund11943 Selenicereus undatus HOM05D004772 ORTHO05D006892 2.0e-32 142.5 97 70.1
ATR0693G185 Amborella trichopoda HOM05D004772 ORTHO05D006892 2.6e-32 142.1 98 67.3
CiPaw.02G079000 Carya illinoinensis HOM05D004772 ORTHO05D006892 2.6e-32 142.1 98 67.3
ClCG06G004870 Citrullus lanatus HOM05D004772 ORTHO05D006892 3.4e-32 141.7 98 66.3
Sed0023608 Sechium edule HOM05D004772 ORTHO05D006892 3.4e-32 141.7 98 64.3
FvH4_4g18900 Fragaria vesca HOM05D004772 ORTHO05D006892 4.4e-32 141.4 95 70.5
FAN12G2191 Fragaria x ananassa HOM05D004772 ORTHO05D006892 4.4e-32 141.4 95 70.5
FAN12G3151 Fragaria x ananassa HOM05D004772 ORTHO05D006892 4.4e-32 141.4 95 70.5
SalBow5G3355 Salvia bowleyana HOM05D004772 ORTHO05D006892 7.6e-32 140.6 98 67.3
AUR62035077 Chenopodium quinoa HOM05D004772 ORTHO05D006892 9.9e-32 140.2 95 69.5
MELO3C021296.2 Cucumis melo HOM05D004772 ORTHO05D006892 9.9e-32 140.2 98 64.3
Gohir.D09G062400 Gossypium hirsutum HOM05D004772 ORTHO05D006892 9.9e-32 140.2 95 67.4
Gorai.006G077200 Gossypium raimondii HOM05D004772 ORTHO05D006892 9.9e-32 140.2 95 67.4
AUR62016163 Chenopodium quinoa HOM05D004772 ORTHO05D006892 1.3e-31 139.8 95 68.4
ECA240G4356 Erigeron canadensis HOM05D004772 ORTHO05D006892 1.3e-31 139.8 98 66.3
Aa31LG8G3880 Aethionema arabicum HOM05D004772 ORTHO05D006892 1.7e-31 139.4 98 64.3
Glyma.07G244300 Glycine max HOM05D004772 ORTHO05D006892 1.7e-31 139.4 98 66.3
Potri.008G211400 Populus trichocarpa HOM05D004772 ORTHO05D006892 1.7e-31 139.4 98 66.3
Prupe.1G129500 Prunus persica HOM05D004772 ORTHO05D006892 1.7e-31 139.4 98 66.3
CsaV3_6G022660 Cucumis sativus L. HOM05D004772 ORTHO05D006892 2.2e-31 139.0 98 64.3
Potri.010G005600 Populus trichocarpa HOM05D004772 ORTHO05D006892 2.2e-31 139.0 98 67.3
VMungo1215G3292 Vigna mungo HOM05D004772 ORTHO05D006892 2.2e-31 139.0 98 65.3
AagrBONN_evm.TU.Sc2ySwM_344.4680 Anthoceros agrestis HOM05D004772 ORTHO05D006892 2.9e-31 138.7 97 68.0
Migut.N00065 Erythranthe guttata HOM05D004772 ORTHO05D006892 2.9e-31 138.7 95 66.3
Phvul.003G108600 Phaseolus vulgaris HOM05D004772 ORTHO05D006892 2.9e-31 138.7 98 65.3
Sc19g0003370 Simmondsia chinensis HOM05D004772 ORTHO05D006892 2.9e-31 138.7 98 67.3
EL10Ac3g04940 Beta vulgaris HOM05D004772 ORTHO05D006892 4.9e-31 137.9 95 69.5
Cpa.g.sc9.115 Carica papaya HOM05D004772 ORTHO05D006892 4.9e-31 137.9 95 67.4
Lj6A683G52 Lonicera japonica HOM05D004772 ORTHO05D006892 8.4e-31 137.1 94 66.0
RcHm_v2.0_Chr4g0423801 Rosa chinensis HOM05D004772 ORTHO05D006892 8.4e-31 137.1 95 68.4
Ca_21472_v3 Cicer arietinum L. HOM05D004772 ORTHO05D006892 1.1e-30 136.7 95 66.3
Sabra10G0004800 Salix brachista HOM05D004772 ORTHO05D006892 1.1e-30 136.7 95 69.5
SGA_v2.0_scaffold119G32697 Striga asiatica HOM05D004772 ORTHO05D006892 1.1e-30 136.7 98 64.3
arahy.Tifrunner.gnm1.ann1.0U01EG Arachis hypogaea HOM05D004772 ORTHO05D006892 1.4e-30 136.3 98 62.2
Thhalv10020259m.g Eutrema salsugineum HOM05D004772 ORTHO05D006892 1.4e-30 136.3 98 62.2
Glyma.17G029600 Glycine max HOM05D004772 ORTHO05D006892 1.4e-30 136.3 98 64.3
HanXRQChr03g0085471 Helianthus annuus HOM05D004772 ORTHO05D006892 1.9e-30 136.0 98 62.2
Rhsim04G0228200 Rhododendron simsii HOM05D004772 ORTHO05D006892 1.9e-30 136.0 98 62.2
Actinidia18636 Actinidia chinensis HOM05D004772 ORTHO05D006892 2.4e-30 135.6 98 64.3
vmacro08098 Vaccinium macrocarpon HOM05D004772 ORTHO05D006892 2.4e-30 135.6 98 62.2
Medtr4g120470 Medicago truncatula HOM05D004772 ORTHO05D006892 5.4e-30 134.4 95 65.3
PGR004G0606 Punica granatum HOM05D004772 ORTHO05D006892 5.4e-30 134.4 95 65.3
PGSC0003DMG400001190 Solanum tuberosum HOM05D004772 ORTHO05D006892 1.6e-29 132.9 95 64.2
Lalb_Chr13g0298261 Lupinus albus HOM05D004772 ORTHO05D006892 2.7e-29 132.1 95 64.2
CBR_g50950 Chara braunii HOM05D004772 ORTHO05D006892 3.5e-29 131.7 95 62.1
Psat4g024680 Pisum sativum HOM05D004772 ORTHO05D006892 3.5e-29 131.7 95 63.2
BcaC05g28847 Brassica carinata HOM05D004772 ORTHO05D006892 4.6e-29 131.3 102 60.8
A05p32820 Brassica napus HOM05D004772 ORTHO05D006892 4.6e-29 131.3 102 60.8
C05p49530 Brassica napus HOM05D004772 ORTHO05D006892 4.6e-29 131.3 102 60.8
BolC5t33706H Brassica oleracea HOM05D004772 ORTHO05D006892 4.6e-29 131.3 102 60.8
BraA05t22104Z Brassica rapa HOM05D004772 ORTHO05D006892 4.6e-29 131.3 102 60.8
Solyc01g065580.4 Solanum lycopersicum HOM05D004772 ORTHO05D006892 4.6e-29 131.3 95 63.2
Sopen01g026980 Solanum pennellii HOM05D004772 ORTHO05D006892 4.6e-29 131.3 95 63.2
TPR.G22770 Trifolium pratense HOM05D004772 ORTHO05D006892 6.0e-29 131.0 95 65.3
BcaB06g25777 Brassica carinata HOM05D004772 ORTHO05D006892 7.8e-29 130.6 103 60.2
CAN.G14.7 Capsicum annuum HOM05D004772 ORTHO05D006892 1.0e-28 130.2 95 63.2
Nitab4.5_0000361g0050 Nicotiana tabacum HOM05D004772 ORTHO05D006892 1.0e-28 130.2 95 64.2
Nitab4.5_0007304g0010 Nicotiana tabacum HOM05D004772 ORTHO05D006892 1.0e-28 130.2 95 64.2
QL06p010892 Quercus lobata HOM05D004772 ORTHO05D006892 1.7e-28 129.4 98 63.3
SMO367G0742 Selaginella moellendorffii HOM05D004772 ORTHO05D006892 1.7e-28 129.4 97 58.8
CAN.G1132.3 Capsicum annuum HOM05D004772 ORTHO05D006892 2.3e-28 129.0 95 63.2
CARHR092060 Cardamine hirsuta HOM05D004772 ORTHO05D006892 3.0e-28 128.6 95 61.1
Lj4g0015807 Lotus japonicus HOM05D004772 ORTHO05D006892 3.0e-28 128.6 98 61.2
AT3G16810 Arabidopsis thaliana HOM05D004772 ORTHO05D006892 1.1e-27 126.7 98 58.2
Carub.0003s1652 Capsella rubella HOM05D004772 ORTHO05D006892 1.1e-27 126.7 98 57.1
Mapoly0099s0044 Marchantia polymorpha HOM05D004772 ORTHO05D006892 2.5e-27 125.6 95 57.9
Sp3g15060 Schrenkiella parvula HOM05D004772 ORTHO05D006892 3.3e-27 125.2 103 57.3
AL3G29730 Arabidopsis lyrata HOM05D004772 ORTHO05D006892 2.1e-26 122.5 98 56.1
MBI18_g04559_MAGBIO Magnolia biondii HOM05D004772 ORTHO05D006892 5.2e-25 117.9 70 80.0
Ciclev10004585m.g Citrus clementina HOM05D004772 ORTHO05D006892 2.0e-24 115.9 103 55.3
Peaxi162Scf00065g01018 Petunia axillaris HOM05D004772 ORTHO05D006892 3.8e-23 111.7 98 55.1
Os03g0831100 Oryza sativa ssp. japonica HOM05D004772 ORTHO05D006892 5.4e-22 107.8 128 43.8
HPP92_010664 Vanilla planifolia HOM05D004772 ORTHO05D006892 2.1e-21 105.9 125 44.8
AUR62015585 Chenopodium quinoa HOM05D004772 ORTHO05D006892 3.3e-19 98.6 66 68.2
CSS0024712 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 4.3e-19 98.2 98 51.0
COL.COLO4_34697 Corchorus olitorius HOM05D004772 ORTHO05D006892 9.6e-19 97.1 62 72.6
Lalb_Chr12g0201111 Lupinus albus HOM05D004772 ORTHO05D020841 6.2e-18 94.4 127 44.1
CDE02G0409 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 1.1e-14 83.6 60 61.7
Psat5g033800 Pisum sativum HOM05D004772 ORTHO05D006892 5.4e-14 81.3 106 46.2
MCO02G008 Micromonas commoda HOM05D004772 ORTHO05D006892 3.5e-13 78.6 98 34.7
Cre12.g528950 Chlamydomonas reinhardtii HOM05D004772 ORTHO05D006892 4.6e-13 78.2 97 39.2
PRCOL_00000476 Prasinoderma coloniale HOM05D004772 ORTHO05D006892 7.9e-13 77.4 92 34.8
unitig_747.g21102 Utricularia gibba HOM05D004772 ORTHO05D006892 6.7e-12 74.3 98 42.9
Zm00001eb103920 Zea mays HOM05D004772 ORTHO05D020841 8.1e-10 67.4 103 37.9
Zm00001eb063600 Zea mays HOM05D004772 ORTHO05D006892 1.1e-09 67.0 105 37.1
Zm00001eb258700 Zea mays HOM05D004772 ORTHO05D020841 3.1e-09 65.5 103 36.9
Zm00001eb355950 Zea mays HOM05D004772 ORTHO05D020841 6.9e-09 64.3 103 35.9
Zm00001eb103930 Zea mays HOM05D004772 ORTHO05D020841 9.0e-09 63.9 103 35.9
Zm00001eb160280 Zea mays HOM05D004772 ORTHO05D020841 9.0e-09 63.9 103 35.9
Zm00001eb246110 Zea mays HOM05D004772 ORTHO05D020841 9.0e-09 63.9 103 35.9
CDE09G0311 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 1.3e-07 60.1 38 71.1
CDE09G1302 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 4.2e-06 55.1 36 61.1


User provided reference genes

Program Settings