Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_15575 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 8.7e-173 610.1 296 100.0
SEGI_36533 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 8.7e-173 610.1 296 100.0
HPP92_013702 Vanilla planifolia HOM05D004186 ORTHO05D006965 2.4e-106 389.4 228 80.3
PSO063G2639 Papaver somniferum HOM05D004186 ORTHO05D006965 9.2e-106 387.5 228 80.3
PSO782G1691 Papaver somniferum HOM05D004186 ORTHO05D006965 9.2e-106 387.5 228 80.3
MBI14_g39543_MAGBIO Magnolia biondii HOM05D004186 ORTHO05D006965 3.9e-104 382.1 228 78.1
Duzib034G0005 Durio zibethinus HOM05D004186 ORTHO05D006965 5.1e-104 381.7 228 79.4
Gohir.D05G282700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 5.1e-104 381.7 228 78.9
CDE04G0897 Ceratophyllum demersum HOM05D004186 ORTHO05D006965 6.6e-104 381.3 228 78.9
Gorai.009G296100 Gossypium raimondii HOM05D004186 ORTHO05D006965 6.6e-104 381.3 228 79.4
Hma1.2p1_1261F.1_g271200 Hydrangea macrophylla HOM05D004186 ORTHO05D006965 1.5e-103 380.2 228 78.1
ATR0580G261 Amborella trichopoda HOM05D004186 ORTHO05D006965 1.9e-103 379.8 228 76.3
Gohir.A05G280700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 1.9e-103 379.8 228 78.9
Lsat_1_v5_gn_8_66460 Lactuca sativa HOM05D004186 ORTHO05D006965 2.5e-103 379.4 228 78.9
Cpa.g.sc95.75 Carica papaya HOM05D004186 ORTHO05D006965 3.3e-103 379.0 228 78.1
Duzib128G0608 Durio zibethinus HOM05D004186 ORTHO05D006965 3.3e-103 379.0 228 78.9
Manes.06G027600 Manihot esculenta HOM05D004186 ORTHO05D006965 3.3e-103 379.0 228 78.9
Phvul.003G148700 Phaseolus vulgaris HOM05D004186 ORTHO05D006965 3.3e-103 379.0 228 78.9
RhsimUnG0079700 Rhododendron simsii HOM05D004186 ORTHO05D006965 4.3e-103 378.6 230 77.0
Thecc.10G167400 Theobroma cacao HOM05D004186 ORTHO05D006965 5.6e-103 378.3 228 78.1
Nn2g12639 Nelumbo nucifera HOM05D004186 ORTHO05D006965 7.3e-103 377.9 228 77.6
Zm00001eb111020 Zea mays HOM05D004186 ORTHO05D006965 7.3e-103 377.9 228 78.1
Nitab4.5_0000244g0180 Nicotiana tabacum HOM05D004186 ORTHO05D006965 9.5e-103 377.5 228 78.5
Rhsim01G0008400 Rhododendron simsii HOM05D004186 ORTHO05D006965 1.2e-102 377.1 228 77.6
TAR625G0733 Trochodendron aralioides HOM05D004186 ORTHO05D006965 1.2e-102 377.1 228 77.2
CiPaw.07G189100 Carya illinoinensis HOM05D004186 ORTHO05D006965 1.6e-102 376.7 228 77.6
Migut.K00260 Erythranthe guttata HOM05D004186 ORTHO05D006965 1.6e-102 376.7 228 77.6
Glyma.17G066200 Glycine max HOM05D004186 ORTHO05D006965 1.6e-102 376.7 228 78.1
HanXRQChr05g0136751 Helianthus annuus HOM05D004186 ORTHO05D006965 1.6e-102 376.7 228 76.8
Nitab4.5_0001212g0070 Nicotiana tabacum HOM05D004186 ORTHO05D006965 1.6e-102 376.7 228 78.5
Hund26412 Selenicereus undatus HOM05D004186 ORTHO05D006965 1.6e-102 376.7 228 78.1
PGSC0003DMG400027477 Solanum tuberosum HOM05D004186 ORTHO05D006965 1.6e-102 376.7 228 78.5
CSS0041373 Camellia sinensis var. sinensis HOM05D004186 ORTHO05D006965 2.1e-102 376.3 228 77.2
VMungo1215G1034 Vigna mungo HOM05D004186 ORTHO05D006965 2.1e-102 376.3 228 78.1
AagrBONN_evm.TU.Sc2ySwM_228.4505 Anthoceros agrestis HOM05D004186 ORTHO05D006965 2.8e-102 375.9 228 78.5
Oeu054233.2 Olea europaea HOM05D004186 ORTHO05D006965 2.8e-102 375.9 228 77.2
Pp3c6_6020 Physcomitrium patens HOM05D004186 ORTHO05D006965 2.8e-102 375.9 228 78.1
Atru.chr7.741 Acer truncatum HOM05D004186 ORTHO05D006965 3.6e-102 375.6 228 77.6
Lj4g0000380 Lotus japonicus HOM05D004186 ORTHO05D006965 3.6e-102 375.6 228 77.2
Os07g0669100 Oryza sativa ssp. japonica HOM05D004186 ORTHO05D006965 3.6e-102 375.6 228 76.8
Prupe.1G091900 Prunus persica HOM05D004186 ORTHO05D006965 3.6e-102 375.6 228 77.6
TAR636G1430 Trochodendron aralioides HOM05D004186 ORTHO05D006965 3.6e-102 375.6 228 77.6
MSTRG.19694 Avicennia marina HOM05D004186 ORTHO05D006965 4.7e-102 375.2 228 76.8
EL10Ac8g18262 Beta vulgaris HOM05D004186 ORTHO05D006965 4.7e-102 375.2 228 76.8
Duzib114G0309 Durio zibethinus HOM05D004186 ORTHO05D006965 4.7e-102 375.2 228 78.1
TPR.G5301 Trifolium pratense HOM05D004186 ORTHO05D006965 4.7e-102 375.2 228 77.6
BcaB08g36123 Brassica carinata HOM05D004186 ORTHO05D006965 6.2e-102 374.8 228 78.1
BraA10t43588Z Brassica rapa HOM05D004186 ORTHO05D006965 6.2e-102 374.8 228 78.1
SGA_v2.0_scaffold69G23283 Striga asiatica HOM05D004186 ORTHO05D006965 6.2e-102 374.8 228 77.2
Zm00001eb330180 Zea mays HOM05D004186 ORTHO05D006965 6.2e-102 374.8 228 77.2
Sopen07g002760 Solanum pennellii HOM05D004186 ORTHO05D006965 8.1e-102 374.4 228 77.6
Dinv42759 Davidia involucrata HOM05D004186 ORTHO05D006965 1.1e-101 374.0 228 77.2
Dinv43343 Davidia involucrata HOM05D004186 ORTHO05D006965 1.1e-101 374.0 228 77.2
Solyc07g006650.4 Solanum lycopersicum HOM05D004186 ORTHO05D006965 1.1e-101 374.0 228 77.2
C09p49530 Brassica napus HOM05D004186 ORTHO05D006965 1.4e-101 373.6 228 77.6
GSVIVG01029114001 Vitis vinifera HOM05D004186 ORTHO05D006965 1.4e-101 373.6 228 76.8
arahy.Tifrunner.gnm1.ann1.CAM23Q Arachis hypogaea HOM05D004186 ORTHO05D006965 1.8e-101 373.2 228 76.8
arahy.Tifrunner.gnm1.ann1.YY53PU Arachis hypogaea HOM05D004186 ORTHO05D006965 1.8e-101 373.2 228 76.8
A10p15060 Brassica napus HOM05D004186 ORTHO05D006965 1.8e-101 373.2 228 77.6
Cpa.g.sc75.2 Carica papaya HOM05D004186 ORTHO05D006965 1.8e-101 373.2 228 75.4
CiPaw.08G037900 Carya illinoinensis HOM05D004186 ORTHO05D006965 1.8e-101 373.2 227 76.7
AT5G57655 Arabidopsis thaliana HOM05D004186 ORTHO05D006965 2.3e-101 372.9 228 77.2
BcaC04g19942 Brassica carinata HOM05D004186 ORTHO05D006965 2.3e-101 372.9 228 77.2
BolC9t57806H Brassica oleracea HOM05D004186 ORTHO05D006965 2.3e-101 372.9 228 77.2
TWI32G0580 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 3.1e-101 372.5 228 78.5
Migut.J01448 Erythranthe guttata HOM05D004186 ORTHO05D006965 4.0e-101 372.1 228 77.2
Psat0ss9363g0320 Pisum sativum HOM05D004186 ORTHO05D006965 4.0e-101 372.1 228 76.8
AL8G33680 Arabidopsis lyrata HOM05D004186 ORTHO05D006965 5.2e-101 371.7 228 76.8
Lj9A689G39 Lonicera japonica HOM05D004186 ORTHO05D006965 5.2e-101 371.7 228 77.2
RcHm_v2.0_Chr4g0403601 Rosa chinensis HOM05D004186 ORTHO05D006965 5.2e-101 371.7 228 77.2
Sc08g0005470 Simmondsia chinensis HOM05D004186 ORTHO05D006965 5.2e-101 371.7 228 75.0
arahy.Tifrunner.gnm1.ann1.6S67WQ Arachis hypogaea HOM05D004186 ORTHO05D006965 6.8e-101 371.3 228 75.9
Thhalv10013406m.g Eutrema salsugineum HOM05D004186 ORTHO05D006965 6.8e-101 371.3 228 76.8
DCAR_017956 Daucus carota HOM05D004186 ORTHO05D006965 8.9e-101 370.9 228 75.9
THA.LOC104813530 Tarenaya hassleriana HOM05D004186 ORTHO05D006965 8.9e-101 370.9 228 76.3
Medtr4g128840 Medicago truncatula HOM05D004186 ORTHO05D006965 1.2e-100 370.5 228 75.9
Sp6g19340 Schrenkiella parvula HOM05D004186 ORTHO05D006965 1.2e-100 370.5 228 77.2
Cc06_g13640 Coffea canephora HOM05D004186 ORTHO05D006965 2.0e-100 369.8 228 75.9
ECA236G4107 Erigeron canadensis HOM05D004186 ORTHO05D006965 2.0e-100 369.8 225 77.8
Ca_21198_v3 Cicer arietinum L. HOM05D004186 ORTHO05D006965 3.4e-100 369.0 228 75.9
FvH4_4g32520 Fragaria vesca HOM05D004186 ORTHO05D006965 3.4e-100 369.0 228 75.9
CANSAT11G0657 Cannabis sativa HOM05D004186 ORTHO05D006965 4.4e-100 368.6 228 75.9
MD16G1265900 Malus domestica HOM05D004186 ORTHO05D006965 4.4e-100 368.6 228 75.4
Manes.02G134800 Manihot esculenta HOM05D004186 ORTHO05D006965 7.6e-100 367.9 228 76.8
Sed0027081 Sechium edule HOM05D004186 ORTHO05D006965 7.6e-100 367.9 228 75.0
Carub.0008s1816 Capsella rubella HOM05D004186 ORTHO05D006965 9.9e-100 367.5 228 76.3
ClCG11G012460 Citrullus lanatus HOM05D004186 ORTHO05D006965 9.9e-100 367.5 228 75.0
CsaV3_2G008080 Cucumis sativus L. HOM05D004186 ORTHO05D006965 1.3e-99 367.1 228 75.4
CAN.G584.24 Capsicum annuum HOM05D004186 ORTHO05D006965 1.7e-99 366.7 228 76.3
AUR62039990 Chenopodium quinoa HOM05D004186 ORTHO05D006965 1.7e-99 366.7 228 75.4
Haze_22131 Corylus avellana HOM05D004186 ORTHO05D006965 2.9e-99 365.9 228 75.9
MELO3C004075.2 Cucumis melo HOM05D004186 ORTHO05D006965 3.8e-99 365.5 228 75.0
FAN12G1387 Fragaria x ananassa HOM05D004186 ORTHO05D006965 3.8e-99 365.5 232 75.4
CARHR271410 Cardamine hirsuta HOM05D004186 ORTHO05D006965 4.9e-99 365.2 228 75.9
Lalb_Chr11g0072331 Lupinus albus HOM05D004186 ORTHO05D006965 6.4e-99 364.8 228 75.9
Potri.018G096049 Populus trichocarpa HOM05D004186 ORTHO05D006965 8.4e-99 364.4 228 75.4
QL02p096850 Quercus lobata HOM05D004186 ORTHO05D006965 8.4e-99 364.4 227 75.8
AUR62040296 Chenopodium quinoa HOM05D004186 ORTHO05D006965 1.1e-98 364.0 228 75.0
Peaxi162Scf00942g00127 Petunia axillaris HOM05D004186 ORTHO05D006965 1.1e-98 364.0 229 76.9
Gohir.A06G175800 Gossypium hirsutum HOM05D004186 ORTHO05D006965 9.2e-98 360.9 228 74.1
Actinidia04122 Actinidia chinensis HOM05D004186 ORTHO05D006965 2.7e-97 359.4 228 73.2
Aa31LG3G13490 Aethionema arabicum HOM05D004186 ORTHO05D006965 4.6e-97 358.6 236 73.7
Ah.14g083970 Amaranthus hybridus HOM05D004186 ORTHO05D006965 6.0e-97 358.2 248 70.6
Ciclev10008154m.g Citrus clementina HOM05D004186 ORTHO05D006965 7.8e-97 357.8 228 73.2
arahy.Tifrunner.gnm1.ann1.LBE3WY Arachis hypogaea HOM05D004186 ORTHO05D006965 2.3e-96 356.3 216 75.5
SalBow6G3740 Salvia bowleyana HOM05D004186 ORTHO05D006965 3.9e-96 355.5 234 73.1
Eucgr.G01193 Eucalyptus grandis HOM05D004186 ORTHO05D006965 1.1e-95 354.0 243 69.5
Oeu052240.1 Olea europaea HOM05D004186 ORTHO05D006965 1.5e-95 353.6 246 67.9
Mapoly0030s0071 Marchantia polymorpha HOM05D004186 ORTHO05D006965 7.3e-95 351.3 224 74.1
FAN07G2198 Fragaria x ananassa HOM05D004186 ORTHO05D006965 2.1e-94 349.7 220 75.0
TWI34G1113 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 8.1e-94 347.8 236 72.0
SMO259G0020 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 3.1e-93 345.9 227 70.0
SalBow6G1169 Salvia bowleyana HOM05D004186 ORTHO05D006965 2.6e-92 342.8 263 65.4
FAN22G1241 Fragaria x ananassa HOM05D004186 ORTHO05D006965 7.6e-92 341.3 227 72.7
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 3.5e-89 332.4 228 70.6
arahy.Tifrunner.gnm1.ann1.WFV6V5 Arachis hypogaea HOM05D004186 ORTHO05D006965 1.1e-87 327.4 235 68.5
arahy.Tifrunner.gnm1.ann1.QC9P0E Arachis hypogaea HOM05D004186 ORTHO05D006965 1.5e-87 327.0 235 68.5
unitig_26.g9078 Utricularia gibba HOM05D004186 ORTHO05D006965 2.1e-86 323.2 234 68.8
vmacro13097 Vaccinium macrocarpon HOM05D004186 ORTHO05D006965 9.3e-82 307.8 242 62.8
MD13G1264900 Malus domestica HOM05D004186 ORTHO05D006965 1.6e-78 297.0 200 71.5
BcaC03g14138 Brassica carinata HOM05D004186 ORTHO05D032859 1.3e-67 260.8 143 83.2
MCO08G279 Micromonas commoda HOM05D004186 ORTHO05D006965 2.9e-67 259.6 216 58.3
PRCOL_00002845 Prasinoderma coloniale HOM05D004186 ORTHO05D006965 5.7e-63 245.4 183 62.3
BolC2t07527H Brassica oleracea HOM05D004186 ORTHO05D032859 9.6e-63 244.6 174 68.4
Dinv41278 Davidia involucrata HOM05D004186 ORTHO05D006965 2.9e-59 233.0 133 76.7
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 5.3e-53 212.2 133 72.9
Gohir.D06G185466 Gossypium hirsutum HOM05D004186 ORTHO05D006965 1.2e-52 211.1 120 77.5
Gorai.010G217000 Gossypium raimondii HOM05D004186 ORTHO05D006965 3.4e-52 209.5 120 76.7
Hund09010 Selenicereus undatus HOM05D004186 ORTHO05D006965 2.8e-46 189.9 228 47.8
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 8.2e-46 188.3 133 67.7
C02p14070 Brassica napus HOM05D004186 ORTHO05D032859 6.9e-45 185.3 102 84.3
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 1.1e-29 134.8 137 52.6
FAN17G2491 Fragaria x ananassa HOM05D004186 ORTHO05D006965 5.3e-29 132.5 95 69.5
Aqoxy7G03142 Aquilegia oxysepala HOM05D004186 ORTHO05D006965 1.2e-28 131.3 228 38.2
Ah.08g214930 Amaranthus hybridus HOM05D004186 ORTHO05D061406 2.1e-25 120.6 141 47.5
A02p08340 Brassica napus HOM05D004186 ORTHO05D006965 1.2e-20 104.8 76 64.5
Zm00001eb265380 Zea mays HOM05D004186 ORTHO05D008381 1.5e-18 97.8 56 76.8
Sc14g0005990 Simmondsia chinensis HOM05D004186 ORTHO05D039000 1.4e-13 81.3 75 53.3
SEGI_36327 Sequoiadendron giganteum HOM05D005425 ORTHO05D006686 7.8e-12 75.5 95 45.3
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 2.9e-11 73.6 72 55.6
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 2.9e-11 73.6 72 55.6
EL10Ac2g04384 Beta vulgaris HOM05D004186 ORTHO05D039000 1.2e-09 68.2 36 80.6
SEGI_35500 Sequoiadendron giganteum HOM05D001642 ORTHO05D002129 4.7e-09 66.2 61 57.4
SalBow7G3706 Salvia bowleyana HOM05D004186 ORTHO05D352404 1.7e-06 57.8 73 42.5
SEGI_02282 Sequoiadendron giganteum HOM05D001289 ORTHO05D002298 1.7e-06 57.8 44 63.6


User provided reference genes

Program Settings