Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_15304 Sequoiadendron giganteum HOM05D001353 ORTHO05D005187 4.7e-67 257.7 127 100.0
Gorai.006G097100 Gossypium raimondii HOM05D001353 ORTHO05D005187 2.2e-19 99.4 70 65.7
AagrBONN_evm.TU.Sc2ySwM_368.659 Anthoceros agrestis HOM05D001353 ORTHO05D005187 2.8e-19 99.0 65 66.2
Gohir.D09G081500 Gossypium hirsutum HOM05D001353 ORTHO05D005187 4.8e-19 98.2 70 64.3
Gohir.A09G081400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.4e-18 96.7 70 64.3
SalBow2G1883 Salvia bowleyana HOM05D001353 ORTHO05D005187 1.4e-18 96.7 66 65.2
Manes.11G036600 Manihot esculenta HOM05D001353 ORTHO05D005187 2.4e-18 95.9 66 65.2
VMungo1080G1628 Vigna mungo HOM05D001353 ORTHO05D005187 4.1e-18 95.1 65 66.2
MSTRG.11044 Avicennia marina HOM05D001353 ORTHO05D005187 5.3e-18 94.7 66 63.6
CDE05G3629 Ceratophyllum demersum HOM05D001353 ORTHO05D005187 5.3e-18 94.7 65 66.2
Migut.I00929 Erythranthe guttata HOM05D001353 ORTHO05D005187 6.9e-18 94.4 72 58.3
GSVIVG01017044001 Vitis vinifera HOM05D001353 ORTHO05D005187 9.0e-18 94.0 66 63.6
QL05p021219 Quercus lobata HOM05D001353 ORTHO05D005187 1.2e-17 93.6 67 62.7
Glyma.15G018200 Glycine max HOM05D001353 ORTHO05D005187 1.5e-17 93.2 66 60.6
Hund00659 Selenicereus undatus HOM05D001353 ORTHO05D005187 2.0e-17 92.8 65 63.1
Phvul.005G170400 Phaseolus vulgaris HOM05D001353 ORTHO05D005187 2.6e-17 92.4 65 63.1
Gohir.A02G119300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 3.4e-17 92.0 66 59.1
MELO3C024262.2 Cucumis melo HOM05D001353 ORTHO05D005187 4.5e-17 91.7 65 61.5
CsaV3_7G033510 Cucumis sativus L. HOM05D001353 ORTHO05D005187 4.5e-17 91.7 65 61.5
Nitab4.5_0006985g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 4.5e-17 91.7 66 62.1
CSS0044224 Camellia sinensis var. sinensis HOM05D001353 ORTHO05D005187 5.9e-17 91.3 67 61.2
Mapoly0110s0022 Marchantia polymorpha HOM05D001353 ORTHO05D005187 5.9e-17 91.3 77 53.2
EL10Ac9g22047 Beta vulgaris HOM05D001353 ORTHO05D005187 7.6e-17 90.9 68 60.3
CANSAT56G0514 Cannabis sativa HOM05D001353 ORTHO05D005187 7.6e-17 90.9 66 60.6
Prupe.3G063900 Prunus persica HOM05D001353 ORTHO05D005187 7.6e-17 90.9 76 55.3
SMO340G0259 Selaginella moellendorffii HOM05D001353 ORTHO05D005187 7.6e-17 90.9 65 66.2
TPR.G37234 Trifolium pratense HOM05D001353 ORTHO05D005187 7.6e-17 90.9 67 61.2
CiPaw.01G234100 Carya illinoinensis HOM05D001353 ORTHO05D005187 1.0e-16 90.5 72 61.1
Haze_16338 Corylus avellana HOM05D001353 ORTHO05D005187 1.0e-16 90.5 67 62.7
Medtr2g101350 Medicago truncatula HOM05D001353 ORTHO05D005187 1.0e-16 90.5 66 59.1
AUR62022162 Chenopodium quinoa HOM05D001353 ORTHO05D005187 1.3e-16 90.1 90 47.8
Potri.001G186600 Populus trichocarpa HOM05D001353 ORTHO05D005187 1.3e-16 90.1 65 61.5
Cc04_g02860 Coffea canephora HOM05D001353 ORTHO05D005187 1.7e-16 89.7 67 61.2
Lalb_Chr24g0396041 Lupinus albus HOM05D001353 ORTHO05D005187 1.7e-16 89.7 66 60.6
Solyc02g088200.4 Solanum lycopersicum HOM05D001353 ORTHO05D005187 1.7e-16 89.7 66 60.6
Sopen02g032890 Solanum pennellii HOM05D001353 ORTHO05D005187 1.7e-16 89.7 66 60.6
vmacro16977 Vaccinium macrocarpon HOM05D001353 ORTHO05D005187 1.7e-16 89.7 66 59.1
Ca_01153_v3 Cicer arietinum L. HOM05D001353 ORTHO05D005187 2.2e-16 89.4 67 61.2
Gohir.D03G060300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 2.2e-16 89.4 66 57.6
MD17G1188900 Malus domestica HOM05D001353 ORTHO05D005187 2.2e-16 89.4 67 58.2
Peaxi162Scf00015g00128 Petunia axillaris HOM05D001353 ORTHO05D005187 2.2e-16 89.4 66 60.6
SGA_v2.0_scaffold5G02539 Striga asiatica HOM05D001353 ORTHO05D005187 2.2e-16 89.4 66 63.6
HPP92_005271 Vanilla planifolia HOM05D001353 ORTHO05D005187 2.2e-16 89.4 64 60.9
Cfa002108 Carpinus fangiana HOM05D001353 ORTHO05D005187 2.9e-16 89.0 67 61.2
FvH4_6g31960 Fragaria vesca HOM05D001353 ORTHO05D005187 2.9e-16 89.0 67 58.2
FAN02G4091 Fragaria x ananassa HOM05D001353 ORTHO05D005187 2.9e-16 89.0 67 58.2
Sabra01G0153700 Salix brachista HOM05D001353 ORTHO05D005187 2.9e-16 89.0 65 61.5
Thecc.06G095300 Theobroma cacao HOM05D001353 ORTHO05D005187 2.9e-16 89.0 66 59.1
Aqoxy7G01510 Aquilegia oxysepala HOM05D001353 ORTHO05D005187 3.8e-16 88.6 66 59.1
Lj3g0013233 Lotus japonicus HOM05D001353 ORTHO05D005187 3.8e-16 88.6 66 59.1
Gorai.003G064100 Gossypium raimondii HOM05D001353 ORTHO05D005187 6.5e-16 87.8 66 56.1
CAN.G438.39 Capsicum annuum HOM05D001353 ORTHO05D005187 8.5e-16 87.4 66 57.6
AUR62031870 Chenopodium quinoa HOM05D001353 ORTHO05D005187 8.5e-16 87.4 119 42.0
Eucgr.F03052 Eucalyptus grandis HOM05D001353 ORTHO05D005187 8.5e-16 87.4 66 59.1
HanXRQChr04g0096261 Helianthus annuus HOM05D001353 ORTHO05D005187 8.5e-16 87.4 66 59.1
QL05p021238 Quercus lobata HOM05D001353 ORTHO05D005187 8.5e-16 87.4 67 59.7
ATR0315G016 Amborella trichopoda HOM05D001353 ORTHO05D005187 1.1e-15 87.0 67 59.7
COL.COLO4_30466 Corchorus olitorius HOM05D001353 ORTHO05D005187 1.1e-15 87.0 48 68.8
PGR102G2383 Punica granatum HOM05D001353 ORTHO05D005187 1.1e-15 87.0 67 61.2
Sed0007714 Sechium edule HOM05D001353 ORTHO05D005187 1.4e-15 86.7 66 59.1
TAR383G0250 Trochodendron aralioides HOM05D001353 ORTHO05D005187 1.4e-15 86.7 66 59.1
RcHm_v2.0_Chr2g0139461 Rosa chinensis HOM05D001353 ORTHO05D005187 1.9e-15 86.3 67 55.2
arahy.Tifrunner.gnm1.ann1.8T8ZNV Arachis hypogaea HOM05D001353 ORTHO05D005187 2.5e-15 85.9 66 59.1
Duzib160G0428 Durio zibethinus HOM05D001353 ORTHO05D005187 2.5e-15 85.9 66 57.6
HanXRQChr04g0096271 Helianthus annuus HOM05D001353 ORTHO05D005187 2.5e-15 85.9 63 61.9
Nn2g11646 Nelumbo nucifera HOM05D001353 ORTHO05D005187 2.5e-15 85.9 66 57.6
PGSC0003DMG400001428 Solanum tuberosum HOM05D001353 ORTHO05D005187 2.5e-15 85.9 66 57.6
unitig_22.g6212 Utricularia gibba HOM05D001353 ORTHO05D005187 4.2e-15 85.1 65 60.0
Atru.chr1.3463 Acer truncatum HOM05D001353 ORTHO05D005187 5.5e-15 84.7 67 61.2
DCAR_007575 Daucus carota HOM05D001353 ORTHO05D005187 5.5e-15 84.7 66 60.6
Solyc03g120480.3 Solanum lycopersicum HOM05D001353 ORTHO05D005187 5.5e-15 84.7 66 54.5
Sopen03g039360 Solanum pennellii HOM05D001353 ORTHO05D005187 5.5e-15 84.7 67 58.2
Ciclev10025383m.g Citrus clementina HOM05D001353 ORTHO05D005187 7.2e-15 84.3 66 56.1
ECA247G1811 Erigeron canadensis HOM05D001353 ORTHO05D005187 7.2e-15 84.3 66 56.1
Hma1.2p1_0659F.1_g197330 Hydrangea macrophylla HOM05D001353 ORTHO05D005187 7.2e-15 84.3 66 56.1
Nitab4.5_0001591g0200 Nicotiana tabacum HOM05D001353 ORTHO05D005187 7.2e-15 84.3 48 70.8
PSO782G2586 Papaver somniferum HOM05D001353 ORTHO05D005187 7.2e-15 84.3 66 60.6
TWI12G1071 Tripterygium wilfordii HOM05D001353 ORTHO05D005187 7.2e-15 84.3 66 56.1
AL3G28930 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 9.4e-15 84.0 65 55.4
BcaC01g03834 Brassica carinata HOM05D001353 ORTHO05D005187 9.4e-15 84.0 65 56.9
Actinidia32713 Actinidia chinensis HOM05D001353 ORTHO05D005187 1.2e-14 83.6 65 60.0
CAN.G206.170 Capsicum annuum HOM05D001353 ORTHO05D005187 1.2e-14 83.6 66 56.1
Os01g0231900 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 1.2e-14 83.6 65 56.9
Carub.0003s1598 Capsella rubella HOM05D001353 ORTHO05D005187 1.6e-14 83.2 65 55.4
CARHR091420 Cardamine hirsuta HOM05D001353 ORTHO05D005187 2.1e-14 82.8 66 54.5
PSO566G0332 Papaver somniferum HOM05D001353 ORTHO05D005187 2.1e-14 82.8 66 59.1
arahy.Tifrunner.gnm1.ann1.K0TTLC Arachis hypogaea HOM05D001353 ORTHO05D005187 2.7e-14 82.4 66 56.1
PGSC0003DMG401002551 Solanum tuberosum HOM05D001353 ORTHO05D005187 2.7e-14 82.4 47 70.2
Aa31LG8G3360 Aethionema arabicum HOM05D001353 ORTHO05D005187 4.6e-14 81.6 66 54.5
ATR0315G092 Amborella trichopoda HOM05D001353 ORTHO05D005187 6.1e-14 81.3 65 60.0
Cpa.g.sc109.36 Carica papaya HOM05D001353 ORTHO05D005187 6.1e-14 81.3 66 56.1
ClCG09G001840 Citrullus lanatus HOM05D001353 ORTHO05D005187 6.1e-14 81.3 53 62.3
Lsat_1_v5_gn_1_34781 Lactuca sativa HOM05D001353 ORTHO05D005187 6.1e-14 81.3 66 57.6
THA.LOC104817973 Tarenaya hassleriana HOM05D001353 ORTHO05D005187 6.1e-14 81.3 65 55.4
ATR0315G123 Amborella trichopoda HOM05D001353 ORTHO05D005187 7.9e-14 80.9 65 60.0
Nitab4.5_0000568g0110 Nicotiana tabacum HOM05D001353 ORTHO05D005187 7.9e-14 80.9 66 56.1
Rhsim12G0201500 Rhododendron simsii HOM05D001353 ORTHO05D000070 7.9e-14 80.9 67 56.7
Zm00001eb119210 Zea mays HOM05D001353 ORTHO05D005187 1.0e-13 80.5 65 53.8
Thhalv10020736m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 1.8e-13 79.7 65 53.8
BcaC01g03832 Brassica carinata HOM05D001353 ORTHO05D005187 2.3e-13 79.3 65 53.8
Carub.0003s1597 Capsella rubella HOM05D001353 ORTHO05D005187 2.3e-13 79.3 65 52.3
Sp3g14600 Schrenkiella parvula HOM05D001353 ORTHO05D005187 5.1e-13 78.2 65 52.3
C03p48170 Brassica napus HOM05D001353 ORTHO05D005187 6.7e-13 77.8 69 50.7
CARHR091410 Cardamine hirsuta HOM05D001353 ORTHO05D005187 1.1e-12 77.0 65 52.3
AL3G28920 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 1.9e-12 76.3 65 50.8
A03p39730 Brassica napus HOM05D001353 ORTHO05D005187 1.9e-12 76.3 65 52.3
Medtr8g033020 Medicago truncatula HOM05D001353 ORTHO05D005187 1.9e-12 76.3 45 64.4
BraA03t13123Z Brassica rapa HOM05D001353 ORTHO05D005187 4.3e-12 75.1 69 49.3
Thhalv10021339m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 1.3e-11 73.6 65 50.8
BcaC09g48591 Brassica carinata HOM05D001353 ORTHO05D005187 6.3e-11 71.2 65 46.2
A01p37890 Brassica napus HOM05D001353 ORTHO05D005187 1.1e-10 70.5 65 44.6
C01p48010 Brassica napus HOM05D001353 ORTHO05D005187 1.1e-10 70.5 65 44.6
BraA01t03849Z Brassica rapa HOM05D001353 ORTHO05D005187 1.1e-10 70.5 65 44.6
Sp3g14590 Schrenkiella parvula HOM05D001353 ORTHO05D005187 1.1e-10 70.5 65 44.6
BcaC09g48592 Brassica carinata HOM05D001353 ORTHO05D005187 6.9e-10 67.8 64 43.8
BcaC09g48593 Brassica carinata HOM05D001353 ORTHO05D005187 6.9e-10 67.8 64 43.8
CBR_g20332 Chara braunii HOM05D001353 ORTHO05D005187 2.0e-09 66.2 56 58.9
CANSAT56G3175 Cannabis sativa HOM05D001353 ORTHO05D005187 2.6e-09 65.9 66 43.9
Os01g0231800 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 1.7e-08 63.2 65 43.1
MBI01_g06185_MAGBIO Magnolia biondii HOM05D001353 ORTHO05D002359 2.5e-07 59.3 47 61.7


User provided reference genes

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