Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_15197 Sequoiadendron giganteum HOM05D001104 ORTHO05D006535 6.5e-69 263.8 125 100.0
ATR1098G116 Amborella trichopoda HOM05D001104 ORTHO05D006535 5.2e-18 94.7 72 59.7
TPR.G26235 Trifolium pratense HOM05D001104 ORTHO05D006535 1.2e-17 93.6 74 62.2
GSVIVG01021522001 Vitis vinifera HOM05D001104 ORTHO05D006535 2.0e-17 92.8 74 59.5
Medtr2g019140 Medicago truncatula HOM05D001104 ORTHO05D006535 3.4e-17 92.0 77 62.3
GSVIVG01004602001 Vitis vinifera HOM05D001104 ORTHO05D006535 4.4e-17 91.7 74 58.1
Lj2A320T43 Lonicera japonica HOM05D001104 ORTHO05D006535 7.5e-17 90.9 73 61.6
Psat1g191040 Pisum sativum HOM05D001104 ORTHO05D006535 7.5e-17 90.9 76 60.5
RcHm_v2.0_Chr5g0014431 Rosa chinensis HOM05D001104 ORTHO05D006535 7.5e-17 90.9 74 60.8
CANSAT35G0592 Cannabis sativa HOM05D001104 ORTHO05D006535 1.3e-16 90.1 75 57.3
Ca_00531_v3 Cicer arietinum L. HOM05D001104 ORTHO05D006535 1.3e-16 90.1 74 60.8
Lalb_Chr18g0055331 Lupinus albus HOM05D001104 ORTHO05D006535 1.3e-16 90.1 77 59.7
PSO675G4930 Papaver somniferum HOM05D001104 ORTHO05D006535 1.3e-16 90.1 75 57.3
Atru.chr10.1174 Acer truncatum HOM05D001104 ORTHO05D006535 2.2e-16 89.4 74 56.8
Lj6g0000691 Lotus japonicus HOM05D001104 ORTHO05D006535 2.2e-16 89.4 74 58.1
FAN25G1463 Fragaria x ananassa HOM05D001104 ORTHO05D006535 2.9e-16 89.0 74 59.5
Peaxi162Scf00317g00115 Petunia axillaris HOM05D001104 ORTHO05D006535 2.9e-16 89.0 72 55.6
TAR627G0692 Trochodendron aralioides HOM05D001104 ORTHO05D006535 2.9e-16 89.0 73 57.5
Aa31LG6G1070 Aethionema arabicum HOM05D001104 ORTHO05D006535 3.7e-16 88.6 72 58.3
Eucgr.E02422 Eucalyptus grandis HOM05D001104 ORTHO05D006535 3.7e-16 88.6 113 45.1
Pp3c1_16510 Physcomitrium patens HOM05D001104 ORTHO05D006535 4.9e-16 88.2 72 55.6
Prupe.4G083000 Prunus persica HOM05D001104 ORTHO05D006535 4.9e-16 88.2 74 58.1
FvH4_3g05290 Fragaria vesca HOM05D001104 ORTHO05D006535 6.4e-16 87.8 74 58.1
SalBow8G4304 Salvia bowleyana HOM05D001104 ORTHO05D006535 6.4e-16 87.8 75 57.3
Sopen08g010960 Solanum pennellii HOM05D001104 ORTHO05D006535 6.4e-16 87.8 72 55.6
THA.LOC104812860 Tarenaya hassleriana HOM05D001104 ORTHO05D006535 6.4e-16 87.8 72 61.1
Aqoxy4G00068 Aquilegia oxysepala HOM05D001104 ORTHO05D006535 1.1e-15 87.0 73 56.2
Glyma.13G219400 Glycine max HOM05D001104 ORTHO05D006535 1.1e-15 87.0 74 56.8
HanXRQChr04g0115731 Helianthus annuus HOM05D001104 ORTHO05D006535 1.1e-15 87.0 78 57.7
PSO017G2683 Papaver somniferum HOM05D001104 ORTHO05D006535 1.1e-15 87.0 78 53.8
PSO017G5739 Papaver somniferum HOM05D001104 ORTHO05D006535 1.1e-15 87.0 78 53.8
PSO396G0001 Papaver somniferum HOM05D001104 ORTHO05D006535 1.1e-15 87.0 78 53.8
PSO706G0014 Papaver somniferum HOM05D001104 ORTHO05D006535 1.1e-15 87.0 78 53.8
Phvul.006G166100 Phaseolus vulgaris HOM05D001104 ORTHO05D006535 1.1e-15 87.0 74 59.5
Lj4g0023374 Lotus japonicus HOM05D001104 ORTHO05D006535 1.4e-15 86.7 83 54.2
Nitab4.5_0000833g0070 Nicotiana tabacum HOM05D001104 ORTHO05D006535 1.4e-15 86.7 72 54.2
PSO706G0012 Papaver somniferum HOM05D001104 ORTHO05D006535 1.4e-15 86.7 78 53.8
HPP92_015669 Vanilla planifolia HOM05D001104 ORTHO05D006535 1.4e-15 86.7 74 58.1
VMungo0540G2226 Vigna mungo HOM05D001104 ORTHO05D006535 1.4e-15 86.7 74 59.5
arahy.Tifrunner.gnm1.ann1.VE11WY Arachis hypogaea HOM05D001104 ORTHO05D006535 1.9e-15 86.3 72 58.3
COL.COLO4_26643 Corchorus olitorius HOM05D001104 ORTHO05D006535 1.9e-15 86.3 75 54.7
PSO017G3520 Papaver somniferum HOM05D001104 ORTHO05D006535 1.9e-15 86.3 78 53.8
Solyc08g048550.3 Solanum lycopersicum HOM05D001104 ORTHO05D006535 1.9e-15 86.3 72 54.2
PGSC0003DMG400029873 Solanum tuberosum HOM05D001104 ORTHO05D006535 1.9e-15 86.3 72 54.2
arahy.Tifrunner.gnm1.ann1.RHLD0A Arachis hypogaea HOM05D001104 ORTHO05D006535 2.4e-15 85.9 72 58.3
Lsat_1_v5_gn_7_27640 Lactuca sativa HOM05D001104 ORTHO05D006535 2.4e-15 85.9 77 54.5
MBI02_g24293_MAGBIO Magnolia biondii HOM05D001104 ORTHO05D006535 2.4e-15 85.9 71 59.2
MD05G1281600 Malus domestica HOM05D001104 ORTHO05D006535 2.4e-15 85.9 74 55.4
Nn4g26599 Nelumbo nucifera HOM05D001104 ORTHO05D006535 2.4e-15 85.9 73 56.2
Thecc.06G148200 Theobroma cacao HOM05D001104 ORTHO05D006535 2.4e-15 85.9 77 55.8
CSS0046912 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006535 3.2e-15 85.5 73 56.2
CAN.G1145.1 Capsicum annuum HOM05D001104 ORTHO05D006535 3.2e-15 85.5 72 52.8
Cpa.g.sc17.5 Carica papaya HOM05D001104 ORTHO05D006535 3.2e-15 85.5 77 55.8
MBI02_g43974_MAGBIO Magnolia biondii HOM05D001104 ORTHO05D006535 3.2e-15 85.5 71 60.6
vmacro03335 Vaccinium macrocarpon HOM05D001104 ORTHO05D006535 3.2e-15 85.5 71 60.6
Duzib235G0771 Durio zibethinus HOM05D001104 ORTHO05D006535 4.1e-15 85.1 74 55.4
Thhalv10025708m.g Eutrema salsugineum HOM05D001104 ORTHO05D006535 4.1e-15 85.1 72 54.2
Lj6g0012679 Lotus japonicus HOM05D001104 ORTHO05D006535 4.1e-15 85.1 83 54.2
PSO017G4909 Papaver somniferum HOM05D001104 ORTHO05D006535 4.1e-15 85.1 78 53.8
PSO706G0006 Papaver somniferum HOM05D001104 ORTHO05D006535 4.1e-15 85.1 78 53.8
TWI53G0561 Tripterygium wilfordii HOM05D001104 ORTHO05D006535 4.1e-15 85.1 74 55.4
Haze_05623 Corylus avellana HOM05D001104 ORTHO05D006535 5.4e-15 84.7 74 52.7
Dinv32236 Davidia involucrata HOM05D001104 ORTHO05D006535 5.4e-15 84.7 71 54.9
Migut.M00896 Erythranthe guttata HOM05D001104 ORTHO05D006535 5.4e-15 84.7 74 51.4
AUR62002715 Chenopodium quinoa HOM05D001104 ORTHO05D006535 7.0e-15 84.3 73 54.8
QL05p057213 Quercus lobata HOM05D001104 ORTHO05D006535 7.0e-15 84.3 74 52.7
QL05p057250 Quercus lobata HOM05D001104 ORTHO05D006535 7.0e-15 84.3 74 52.7
Carub.0007s2292 Capsella rubella HOM05D001104 ORTHO05D006535 9.2e-15 84.0 72 56.9
Sabra11G0066300 Salix brachista HOM05D001104 ORTHO05D006535 9.2e-15 84.0 75 60.0
BcaC09g51528 Brassica carinata HOM05D001104 ORTHO05D006535 1.2e-14 83.6 72 55.6
A01p10280 Brassica napus HOM05D001104 ORTHO05D006535 1.2e-14 83.6 72 55.6
C01p12230 Brassica napus HOM05D001104 ORTHO05D006535 1.2e-14 83.6 72 55.6
BolC1t01199H Brassica oleracea HOM05D001104 ORTHO05D006535 1.2e-14 83.6 72 55.6
BraA01t00975Z Brassica rapa HOM05D001104 ORTHO05D006535 1.2e-14 83.6 72 55.6
Ciclev10016002m.g Citrus clementina HOM05D001104 ORTHO05D006535 1.2e-14 83.6 75 58.7
Gohir.A10G042200 Gossypium hirsutum HOM05D001104 ORTHO05D006535 1.2e-14 83.6 76 53.9
Gohir.D10G043100 Gossypium hirsutum HOM05D001104 ORTHO05D006535 1.2e-14 83.6 76 53.9
Gorai.011G045700 Gossypium raimondii HOM05D001104 ORTHO05D006535 1.2e-14 83.6 76 53.9
Manes.17G072000 Manihot esculenta HOM05D001104 ORTHO05D006535 1.2e-14 83.6 71 57.7
Oeu030938.1 Olea europaea HOM05D001104 ORTHO05D006535 1.2e-14 83.6 73 54.8
Potri.011G083300 Populus trichocarpa HOM05D001104 ORTHO05D006535 1.2e-14 83.6 74 56.8
ECA236G1178 Erigeron canadensis HOM05D001104 ORTHO05D006535 1.6e-14 83.2 74 52.7
PSO323G0001 Papaver somniferum HOM05D001104 ORTHO05D006535 2.1e-14 82.8 78 51.3
Sp7g15700 Schrenkiella parvula HOM05D001104 ORTHO05D006535 2.1e-14 82.8 72 55.6
MELO3C002750.2 Cucumis melo HOM05D001104 ORTHO05D006535 2.7e-14 82.4 75 53.3
DCAR_003899 Daucus carota HOM05D001104 ORTHO05D006535 2.7e-14 82.4 78 53.8
Sc24g0001720 Simmondsia chinensis HOM05D001104 ORTHO05D006535 2.7e-14 82.4 74 56.8
EL10Ac8g19654 Beta vulgaris HOM05D001104 ORTHO05D006535 3.5e-14 82.0 71 56.3
SGA_v2.0_scaffold1G00192 Striga asiatica HOM05D001104 ORTHO05D006535 3.5e-14 82.0 73 53.4
Actinidia33715 Actinidia chinensis HOM05D001104 ORTHO05D006535 4.6e-14 81.6 78 53.8
CiPaw.10G090500 Carya illinoinensis HOM05D001104 ORTHO05D006535 4.6e-14 81.6 77 51.9
ClCG03G006710 Citrullus lanatus HOM05D001104 ORTHO05D006535 4.6e-14 81.6 74 52.7
Ah.14g086390 Amaranthus hybridus HOM05D001104 ORTHO05D006535 6.0e-14 81.3 73 54.8
CARHR225140 Cardamine hirsuta HOM05D001104 ORTHO05D006535 6.0e-14 81.3 75 56.0
FAN16G1841 Fragaria x ananassa HOM05D001104 ORTHO05D006535 6.0e-14 81.3 83 53.0
BcaNung00010 Brassica carinata HOM05D001104 ORTHO05D006535 7.8e-14 80.9 72 54.2
CsaV3_1G004620 Cucumis sativus L. HOM05D001104 ORTHO05D006535 7.8e-14 80.9 74 52.7
PGR031G0308 Punica granatum HOM05D001104 ORTHO05D006535 7.8e-14 80.9 73 53.4
Sed0007195 Sechium edule HOM05D001104 ORTHO05D006535 1.0e-13 80.5 78 51.3
AL7G36010 Arabidopsis lyrata HOM05D001104 ORTHO05D006535 1.3e-13 80.1 72 55.6
Cc11_g03520 Coffea canephora HOM05D001104 ORTHO05D006535 1.7e-13 79.7 73 52.1
CBR_g8333 Chara braunii HOM05D001104 ORTHO05D006535 2.3e-13 79.3 77 53.2
AUR62030175 Chenopodium quinoa HOM05D001104 ORTHO05D006535 3.0e-13 79.0 71 54.9
AagrBONN_evm.TU.Sc2ySwM_117.1824 Anthoceros agrestis HOM05D001104 ORTHO05D006535 3.9e-13 78.6 72 56.9
AT4G18370 Arabidopsis thaliana HOM05D001104 ORTHO05D006535 3.9e-13 78.6 78 56.4
Lj6g0025469 Lotus japonicus HOM05D001104 ORTHO05D006535 5.1e-13 78.2 45 75.6
SMO134G0095 Selaginella moellendorffii HOM05D001104 ORTHO05D006535 5.1e-13 78.2 69 47.8
FAN11G2893 Fragaria x ananassa HOM05D001104 ORTHO05D006535 6.6e-13 77.8 83 50.6
CDE05G3320 Ceratophyllum demersum HOM05D001104 ORTHO05D006535 8.6e-13 77.4 73 52.1
Rhsim13G0115200 Rhododendron simsii HOM05D001104 ORTHO05D006535 8.6e-13 77.4 80 50.0
Hund17819 Selenicereus undatus HOM05D001104 ORTHO05D006535 1.1e-12 77.0 73 53.4
QL05p056041 Quercus lobata HOM05D001104 ORTHO05D006535 2.5e-12 75.9 72 48.6
Lj1g0025125 Lotus japonicus HOM05D001104 ORTHO05D006535 3.3e-12 75.5 42 78.6
QL05p057103 Quercus lobata HOM05D001104 ORTHO05D006535 7.3e-12 74.3 72 47.2
Zm00001eb031870 Zea mays HOM05D001104 ORTHO05D006535 1.2e-11 73.6 76 52.6
MBI02_g46874_MAGBIO Magnolia biondii HOM05D001104 ORTHO05D006535 4.7e-11 71.6 43 69.8
CDE02G2406 Ceratophyllum demersum HOM05D001104 ORTHO05D006535 2.3e-10 69.3 71 53.5
Os12g0616600 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006535 8.9e-10 67.4 76 47.4
FvH4_3g19500 Fragaria vesca HOM05D001104 ORTHO05D006535 4.4e-09 65.1 58 50.0
MCO16G488 Micromonas commoda HOM05D001104 ORTHO05D008876 7.8e-06 54.3 69 40.6


User provided reference genes

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