Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_14499 Sequoiadendron giganteum HOM05D003317 ORTHO05D003696 4.7e-292 1007.3 568 100.0
SEGI_25513 Sequoiadendron giganteum HOM05D003317 ORTHO05D003696 1.7e-164 583.6 499 73.1
MBI19_g11829_MAGBIO Magnolia biondii HOM05D003317 ORTHO05D003696 6.0e-29 133.3 183 41.0
CAN.G498.3 Capsicum annuum HOM05D003317 ORTHO05D003696 1.7e-28 131.7 188 39.9
CAN.G63.8 Capsicum annuum HOM05D003317 ORTHO05D003696 3.9e-28 130.6 188 39.9
Sopen00g008950 Solanum pennellii HOM05D003317 ORTHO05D003696 2.5e-27 127.9 189 39.7
Sopen07g021250 Solanum pennellii HOM05D003317 ORTHO05D003696 2.5e-27 127.9 189 39.7
PGSC0003DMG400013008 Solanum tuberosum HOM05D003317 ORTHO05D003696 4.3e-27 127.1 189 39.2
HPP92_004371 Vanilla planifolia HOM05D003317 ORTHO05D003696 1.3e-26 125.6 187 38.5
Eucgr.C00817 Eucalyptus grandis HOM05D003317 ORTHO05D003696 2.8e-26 124.4 196 36.2
Nitab4.5_0000343g0140 Nicotiana tabacum HOM05D003317 ORTHO05D003696 3.1e-25 120.9 193 36.8
TAR626G1699 Trochodendron aralioides HOM05D003317 ORTHO05D003696 3.1e-25 120.9 186 36.6
TAR626G1452 Trochodendron aralioides HOM05D003317 ORTHO05D003696 4.0e-25 120.6 186 36.6
THA.LOC104815331 Tarenaya hassleriana HOM05D003317 ORTHO05D003696 1.2e-24 119.0 193 39.9
Duzib168G0118 Durio zibethinus HOM05D003317 ORTHO05D003696 1.5e-24 118.6 194 34.0
PGR142G0733 Punica granatum HOM05D003317 ORTHO05D003696 1.5e-24 118.6 194 36.6
MD15G1216800 Malus domestica HOM05D003317 ORTHO05D003696 2.0e-24 118.2 195 38.5
GSVIVG01015088001 Vitis vinifera HOM05D003317 ORTHO05D003696 2.0e-24 118.2 196 35.2
COL.COLO4_18104 Corchorus olitorius HOM05D003317 ORTHO05D003696 2.6e-24 117.9 194 34.5
Dinv42387 Davidia involucrata HOM05D003317 ORTHO05D003696 2.6e-24 117.9 192 32.3
Nitab4.5_0002966g0040 Nicotiana tabacum HOM05D003317 ORTHO05D003696 2.6e-24 117.9 195 35.9
Hund08778 Selenicereus undatus HOM05D003317 ORTHO05D003696 2.6e-24 117.9 183 37.2
Gorai.010G087700 Gossypium raimondii HOM05D003317 ORTHO05D003696 5.8e-24 116.7 184 37.0
arahy.Tifrunner.gnm1.ann1.MFQ8D7 Arachis hypogaea HOM05D003317 ORTHO05D003696 9.9e-24 115.9 195 36.4
Gohir.D06G075100 Gossypium hirsutum HOM05D003317 ORTHO05D003696 9.9e-24 115.9 184 37.0
Nn6g35618 Nelumbo nucifera HOM05D003317 ORTHO05D003696 9.9e-24 115.9 186 36.0
Peaxi162Scf00127g00131 Petunia axillaris HOM05D003317 ORTHO05D003696 9.9e-24 115.9 195 34.9
Sabra06G0111300 Salix brachista HOM05D003317 ORTHO05D003696 1.3e-23 115.5 191 35.1
arahy.Tifrunner.gnm1.ann1.81HHLD Arachis hypogaea HOM05D003317 ORTHO05D003696 2.2e-23 114.8 195 36.9
DCAR_028330 Daucus carota HOM05D003317 ORTHO05D003696 2.2e-23 114.8 193 35.2
Zm00001eb177300 Zea mays HOM05D003317 ORTHO05D003696 3.8e-23 114.0 177 37.3
Aa31sc133G60 Aethionema arabicum HOM05D003317 ORTHO05D003696 4.9e-23 113.6 181 35.9
Gohir.A06G076100 Gossypium hirsutum HOM05D003317 ORTHO05D003696 1.1e-22 112.5 184 35.9
Phvul.009G227500 Phaseolus vulgaris HOM05D003317 ORTHO05D003696 1.4e-22 112.1 190 33.2
Oeu063419.1 Olea europaea HOM05D003317 ORTHO05D003696 1.9e-22 111.7 196 35.2
Prupe.7G199800 Prunus persica HOM05D003317 ORTHO05D003696 2.4e-22 111.3 191 35.6
Potri.006G142200 Populus trichocarpa HOM05D003317 ORTHO05D003696 3.2e-22 110.9 191 33.5
VMungo1309G0541 Vigna mungo HOM05D003317 ORTHO05D003696 4.2e-22 110.5 180 33.9
Cc06_g12060 Coffea canephora HOM05D003317 ORTHO05D003696 5.4e-22 110.2 190 32.1
Glyma.15G177400 Glycine max HOM05D003317 ORTHO05D003696 5.4e-22 110.2 191 34.6
Lj7A686T70 Lonicera japonica HOM05D003317 ORTHO05D003696 5.4e-22 110.2 181 34.3
FAN23G1713 Fragaria x ananassa HOM05D003317 ORTHO05D003696 7.1e-22 109.8 193 36.3
QL11p000685 Quercus lobata HOM05D003317 ORTHO05D003696 7.1e-22 109.8 192 33.9
EL10Ac8g19064 Beta vulgaris HOM05D003317 ORTHO05D003696 9.3e-22 109.4 187 34.8
CBR_g28657 Chara braunii HOM05D003317 ORTHO05D003696 9.3e-22 109.4 247 30.0
MSTRG.10519 Avicennia marina HOM05D003317 ORTHO05D003696 1.6e-21 108.6 191 34.0
Actinidia29929 Actinidia chinensis HOM05D003317 ORTHO05D003696 2.1e-21 108.2 186 36.6
HanXRQChr09g0237821 Helianthus annuus HOM05D003317 ORTHO05D003696 2.1e-21 108.2 193 32.6
MD02G1090200 Malus domestica HOM05D003317 ORTHO05D003696 2.1e-21 108.2 196 36.2
Thecc.09G078000 Theobroma cacao HOM05D003317 ORTHO05D003696 2.1e-21 108.2 195 30.3
TAR624G0435 Trochodendron aralioides HOM05D003317 ORTHO05D003696 2.1e-21 108.2 175 36.0
Carub.0003s2717 Capsella rubella HOM05D003317 ORTHO05D003696 3.5e-21 107.5 179 35.2
TWI34G1043 Tripterygium wilfordii HOM05D003317 ORTHO05D003696 3.5e-21 107.5 193 32.6
BraA07t28422Z Brassica rapa HOM05D003317 ORTHO05D003696 4.6e-21 107.1 185 35.7
FAN28G0340 Fragaria x ananassa HOM05D003317 ORTHO05D003696 4.6e-21 107.1 193 35.8
Lalb_Chr23g0276391 Lupinus albus HOM05D003317 ORTHO05D003696 4.6e-21 107.1 194 34.0
Zm00001eb040360 Zea mays HOM05D003317 ORTHO05D003696 6.0e-21 106.7 178 37.6
AT2G06040 Arabidopsis thaliana HOM05D003317 ORTHO05D003696 7.9e-21 106.3 179 36.3
FAN26G2208 Fragaria x ananassa HOM05D003317 ORTHO05D003696 7.9e-21 106.3 193 35.8
Sp3g24620 Schrenkiella parvula HOM05D003317 ORTHO05D003696 1.0e-20 105.9 179 35.8
Cpa.g.sc28.54 Carica papaya HOM05D003317 ORTHO05D003696 1.3e-20 105.5 191 32.5
MELO3C015517.2 Cucumis melo HOM05D003317 ORTHO05D003696 1.3e-20 105.5 187 34.2
FAN26G0708 Fragaria x ananassa HOM05D003317 ORTHO05D003696 1.3e-20 105.5 193 35.8
C07p09320 Brassica napus HOM05D003317 ORTHO05D003696 1.8e-20 105.1 185 35.7
BolC7t41350H Brassica oleracea HOM05D003317 ORTHO05D003696 1.8e-20 105.1 185 35.7
Lj6g0021845 Lotus japonicus HOM05D003317 ORTHO05D003696 1.8e-20 105.1 186 35.5
vmacro06337 Vaccinium macrocarpon HOM05D003317 ORTHO05D003696 1.8e-20 105.1 183 36.1
RcHm_v2.0_Chr2g0094821 Rosa chinensis HOM05D003317 ORTHO05D003696 2.3e-20 104.8 192 33.9
BcaC06g35953 Brassica carinata HOM05D003317 ORTHO05D003696 3.0e-20 104.4 189 35.4
CiPaw.03G207100 Carya illinoinensis HOM05D003317 ORTHO05D003696 3.0e-20 104.4 182 34.6
CDE05G2394 Ceratophyllum demersum HOM05D001216 ORTHO05D003822 3.0e-20 104.4 188 36.7
Sc18g0002500 Simmondsia chinensis HOM05D003317 ORTHO05D003696 3.0e-20 104.4 194 32.5
Haze_26007 Corylus avellana HOM05D003317 ORTHO05D003696 3.9e-20 104.0 182 35.7
FvH4_1g08600 Fragaria vesca HOM05D003317 ORTHO05D003696 3.9e-20 104.0 193 35.2
AL3G43680 Arabidopsis lyrata HOM05D003317 ORTHO05D003696 5.1e-20 103.6 179 35.2
FAN19G2419 Fragaria x ananassa HOM05D003317 ORTHO05D003696 5.1e-20 103.6 193 35.2
PSO135G1032 Papaver somniferum HOM05D003317 ORTHO05D003696 5.1e-20 103.6 181 35.9
AUR62025246 Chenopodium quinoa HOM05D003317 ORTHO05D003696 6.7e-20 103.2 176 33.5
Ciclev10007604m.g Citrus clementina HOM05D003317 ORTHO05D003696 6.7e-20 103.2 182 35.7
Lsat_1_v5_gn_7_35060 Lactuca sativa HOM05D003317 ORTHO05D003696 6.7e-20 103.2 191 33.0
Rhsim03G0227900 Rhododendron simsii HOM05D003317 ORTHO05D003696 1.1e-19 102.4 183 31.7
BcaB06g26884 Brassica carinata HOM05D003317 ORTHO05D003696 1.5e-19 102.1 180 33.9
A07p06270 Brassica napus HOM05D003317 ORTHO05D003696 1.9e-19 101.7 187 34.2
Sed0002159 Sechium edule HOM05D003317 ORTHO05D003696 2.5e-19 101.3 177 33.3
Migut.L01559 Erythranthe guttata HOM05D003317 ORTHO05D003696 5.6e-19 100.1 182 34.1
Os08g0459100 Oryza sativa ssp. japonica HOM05D003317 ORTHO05D003696 9.6e-19 99.4 184 34.2
AagrBONN_evm.TU.Sc2ySwM_344.4786 Anthoceros agrestis HOM05D003317 ORTHO05D003696 1.3e-18 99.0 188 33.5
Dinv41844 Davidia involucrata HOM05D003317 ORTHO05D003696 1.3e-18 99.0 177 35.6
ClCG03G015120 Citrullus lanatus HOM05D003317 ORTHO05D003696 1.6e-18 98.6 174 33.3
ATR0598G291 Amborella trichopoda HOM05D003317 ORTHO05D003696 4.8e-18 97.1 180 35.0
CsaV3_1G040990 Cucumis sativus L. HOM05D003317 ORTHO05D003696 4.8e-18 97.1 137 38.0
Sed0023098 Sechium edule HOM05D003317 ORTHO05D003696 4.8e-18 97.1 176 33.5
Cfa002996 Carpinus fangiana HOM05D003317 ORTHO05D003696 6.2e-18 96.7 180 33.9
Manes.16G095800 Manihot esculenta HOM05D003317 ORTHO05D003696 6.2e-18 96.7 194 30.4
Aqoxy7G03984 Aquilegia oxysepala HOM05D003317 ORTHO05D003696 1.4e-17 95.5 185 33.5
Cpa.g.sc126.22 Carica papaya HOM05D003317 ORTHO05D003696 1.4e-17 95.5 177 36.2
ECA240G4381 Erigeron canadensis HOM05D003317 ORTHO05D003696 1.4e-17 95.5 193 29.5
Medtr2g041610 Medicago truncatula HOM05D003317 ORTHO05D003696 1.8e-17 95.1 197 32.5
PSO210G7636 Papaver somniferum HOM05D003317 ORTHO05D003696 2.4e-17 94.7 153 34.6
TPR.G28585 Trifolium pratense HOM05D003317 ORTHO05D003696 2.4e-17 94.7 189 32.8
Atru.chr7.1699 Acer truncatum HOM05D003317 ORTHO05D003696 3.1e-17 94.4 183 32.2
GSVIVG01035471001 Vitis vinifera HOM05D003317 ORTHO05D003696 6.9e-17 93.2 192 32.3
AUR62028939 Chenopodium quinoa HOM05D003317 ORTHO05D003696 9.0e-17 92.8 132 35.6
Ca_23417_v3 Cicer arietinum L. HOM05D003317 ORTHO05D003696 1.2e-16 92.4 183 31.7
SGA_v2.0_scaffold21G09482 Striga asiatica HOM05D003317 ORTHO05D003696 1.5e-16 92.0 166 33.1
Ah.09g231590 Amaranthus hybridus HOM05D003317 ORTHO05D003696 2.0e-16 91.7 180 31.1
Thhalv10002406m.g Eutrema salsugineum HOM05D003317 ORTHO05D003696 2.0e-16 91.7 403 24.6
VMungo1215G0865 Vigna mungo HOM05D003317 ORTHO05D003696 2.0e-16 91.7 195 32.3
CANSAT56G0327 Cannabis sativa HOM05D003317 ORTHO05D003696 4.5e-16 90.5 196 33.2
Glyma.17G049600 Glycine max HOM05D003317 ORTHO05D003696 5.8e-16 90.1 192 31.8
Cre12.g559050 Chlamydomonas reinhardtii HOM05D003317 ORTHO05D003696 1.0e-15 89.4 184 32.1
Psat1g134160 Pisum sativum HOM05D003317 ORTHO05D003696 1.3e-15 89.0 188 31.9
SEGI_10530 Sequoiadendron giganteum HOM05D003317 ORTHO05D003696 4.9e-15 87.0 89 53.9
CARHR103720 Cardamine hirsuta HOM05D003317 ORTHO05D003696 2.5e-14 84.7 476 26.1
Phvul.003G131200 Phaseolus vulgaris HOM05D003317 ORTHO05D003696 3.2e-14 84.3 195 30.8
arahy.Tifrunner.gnm1.ann1.7WMI9V Arachis hypogaea HOM05D003317 ORTHO05D003696 5.5e-14 83.6 193 30.6
arahy.Tifrunner.gnm1.ann1.C19Y0U Arachis hypogaea HOM05D003317 ORTHO05D003696 5.5e-14 83.6 191 30.9
SHI33751 Sapria himalayana HOM05D003317 ORTHO05D003696 9.3e-14 82.8 195 30.8
vmacro12621 Vaccinium macrocarpon HOM05D003317 ORTHO05D003696 9.3e-14 82.8 185 32.4
MSTRG.25987 Avicennia marina HOM05D003317 ORTHO05D003696 1.6e-13 82.0 174 31.6
Rhsim01G0183000 Rhododendron simsii HOM05D003317 ORTHO05D003696 1.6e-13 82.0 184 31.5
Cc08_g01130 Coffea canephora HOM05D003317 ORTHO05D003696 6.0e-13 80.1 183 30.6
Gorai.001G020000 Gossypium raimondii HOM05D003317 ORTHO05D003696 6.0e-13 80.1 185 33.0
Gohir.A07G019500 Gossypium hirsutum HOM05D003317 ORTHO05D003696 1.0e-12 79.3 162 35.2
CSS0017754 Camellia sinensis var. sinensis HOM05D003317 ORTHO05D003696 1.3e-12 79.0 148 35.8
Glyma.13G110100 Glycine max HOM05D003317 ORTHO05D003696 3.9e-12 77.4 110 37.3
Oeu018029.1 Olea europaea HOM05D003317 ORTHO05D003696 3.9e-12 77.4 185 29.7
Peaxi162Scf00486g01021 Petunia axillaris HOM05D003317 ORTHO05D003696 5.1e-12 77.0 161 31.1
Migut.A00075 Erythranthe guttata HOM05D003317 ORTHO05D003696 2.5e-11 74.7 179 28.5
DCAR_001231 Daucus carota HOM05D003317 ORTHO05D003696 4.3e-11 73.9 102 38.2
Nitab4.5_0000446g0150 Nicotiana tabacum HOM05D003317 ORTHO05D003696 4.3e-11 73.9 162 33.3
SalBow4G1263 Salvia bowleyana HOM05D003317 ORTHO05D003696 5.7e-11 73.6 189 29.6
DCAR_004378 Daucus carota HOM05D003317 ORTHO05D003696 7.4e-11 73.2 118 30.5
Thecc.09G063600 Theobroma cacao HOM05D003317 ORTHO05D003696 9.6e-11 72.8 141 34.0
Ca_21319_v3 Cicer arietinum L. HOM05D003317 ORTHO05D003696 2.1e-10 71.6 147 30.6
TWI32G0197 Tripterygium wilfordii HOM05D003317 ORTHO05D003696 2.1e-10 71.6 141 35.5
Duzib168G1355 Durio zibethinus HOM05D003317 ORTHO05D003696 4.8e-10 70.5 181 31.5
Medtr3g435660 Medicago truncatula HOM05D003317 ORTHO05D003696 8.2e-10 69.7 158 32.9
Nitab4.5_0008422g0030 Nicotiana tabacum HOM05D003317 ORTHO05D003696 1.1e-09 69.3 178 31.5
AagrBONN_evm.TU.Sc2ySwM_228.920 Anthoceros agrestis HOM05D003317 ORTHO05D003696 1.8e-09 68.6 135 30.4
Cfa002995 Carpinus fangiana HOM05D003317 ORTHO05D003696 2.4e-09 68.2 119 31.9
PGSC0003DMG400018807 Solanum tuberosum HOM05D003317 ORTHO05D003696 4.1e-09 67.4 159 32.7
Medtr4g125430 Medicago truncatula HOM05D003317 ORTHO05D003696 9.0e-09 66.2 162 29.6
Solyc08g061650.4 Solanum lycopersicum HOM05D003317 ORTHO05D003696 1.7e-07 62.0 159 30.8
Sopen08g017120 Solanum pennellii HOM05D003317 ORTHO05D003696 2.2e-07 61.6 159 30.8
Medtr4g125390 Medicago truncatula HOM05D003317 ORTHO05D003696 2.9e-07 61.2 136 29.4
PRCOL_00004656 Prasinoderma coloniale HOM05D003317 ORTHO05D003696 2.9e-07 61.2 101 29.7
TWI34G1197 Tripterygium wilfordii HOM05D003317 ORTHO05D003696 8.4e-07 59.7 186 30.1
HanXRQChr03g0065631 Helianthus annuus HOM05D003317 ORTHO05D003696 2.5e-06 58.2 105 29.5
Lj4g0026519 Lotus japonicus HOM05D003317 ORTHO05D003696 3.2e-06 57.8 105 30.5


User provided reference genes

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