Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_14248 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 4.3e-96 354.8 191 100.0
CDE02G0168 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.1e-32 144.1 96 72.9
AagrBONN_evm.TU.Sc2ySwM_228.3019 Anthoceros agrestis HOM05D004480 ORTHO05D005546 7.4e-32 141.4 81 84.0
MBI07_g30868_MAGBIO Magnolia biondii HOM05D004480 ORTHO05D005546 7.4e-32 141.4 81 84.0
SMO203G0211 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 2.2e-31 139.8 81 82.7
Pp3c20_22360 Physcomitrium patens HOM05D004480 ORTHO05D005546 2.8e-31 139.4 81 81.5
MD01G1035500 Malus domestica HOM05D004480 ORTHO05D005546 8.2e-31 137.9 81 82.7
MD15G1320300 Malus domestica HOM05D004480 ORTHO05D005546 8.2e-31 137.9 81 82.7
PGR119G0799 Punica granatum HOM05D004480 ORTHO05D005546 8.2e-31 137.9 96 74.0
TAR623G1647 Trochodendron aralioides HOM05D004480 ORTHO05D005546 8.2e-31 137.9 81 80.2
TAR626G1520 Trochodendron aralioides HOM05D004480 ORTHO05D005546 8.2e-31 137.9 81 80.2
Hma1.2p1_0513F.1_g169740 Hydrangea macrophylla HOM05D004480 ORTHO05D005546 1.1e-30 137.5 81 80.2
Atru.chr11.1453 Acer truncatum HOM05D004480 ORTHO05D005546 1.4e-30 137.1 81 81.5
Atru.chr11.1483 Acer truncatum HOM05D004480 ORTHO05D005546 1.4e-30 137.1 81 81.5
Actinidia18384 Actinidia chinensis HOM05D004480 ORTHO05D005546 1.4e-30 137.1 81 81.5
QL11p020579 Quercus lobata HOM05D004480 ORTHO05D005546 1.4e-30 137.1 81 81.5
Cfa008538 Carpinus fangiana HOM05D004480 ORTHO05D005546 1.8e-30 136.7 81 80.2
Eucgr.H00240 Eucalyptus grandis HOM05D004480 ORTHO05D005546 1.8e-30 136.7 81 81.5
PGR083G0026 Punica granatum HOM05D004480 ORTHO05D005546 1.8e-30 136.7 81 81.5
BcaC09g50090 Brassica carinata HOM05D004480 ORTHO05D005546 3.1e-30 136.0 81 80.2
BcaNung00392 Brassica carinata HOM05D004480 ORTHO05D005546 3.1e-30 136.0 81 80.2
BcaNung06395 Brassica carinata HOM05D004480 ORTHO05D005546 3.1e-30 136.0 81 80.2
A01p23550 Brassica napus HOM05D004480 ORTHO05D005546 3.1e-30 136.0 81 80.2
A03p48230 Brassica napus HOM05D004480 ORTHO05D005546 3.1e-30 136.0 81 80.2
A09p44300 Brassica napus HOM05D004480 ORTHO05D005546 3.1e-30 136.0 81 80.2
C01p29210 Brassica napus HOM05D004480 ORTHO05D005546 3.1e-30 136.0 81 80.2
C07p46260 Brassica napus HOM05D004480 ORTHO05D005546 3.1e-30 136.0 81 80.2
BolC1t02850H Brassica oleracea HOM05D004480 ORTHO05D005546 3.1e-30 136.0 81 80.2
BolC7t45142H Brassica oleracea HOM05D004480 ORTHO05D005546 3.1e-30 136.0 81 80.2
BraA01t02261Z Brassica rapa HOM05D004480 ORTHO05D005546 3.1e-30 136.0 81 80.2
BraA03t13931Z Brassica rapa HOM05D004480 ORTHO05D005546 3.1e-30 136.0 81 80.2
BraA09t39892Z Brassica rapa HOM05D004480 ORTHO05D005546 3.1e-30 136.0 81 80.2
CDE02G2467 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 3.1e-30 136.0 81 80.2
Lj1g0018422 Lotus japonicus HOM05D004480 ORTHO05D005546 3.1e-30 136.0 81 79.0
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 3.1e-30 136.0 81 80.2
PGSC0003DMG400021321 Solanum tuberosum HOM05D004480 ORTHO05D005546 3.1e-30 136.0 81 80.2
arahy.Tifrunner.gnm1.ann1.0BX3U4 Arachis hypogaea HOM05D004480 ORTHO05D005546 4.1e-30 135.6 81 79.0
arahy.Tifrunner.gnm1.ann1.JT43NG Arachis hypogaea HOM05D004480 ORTHO05D005546 4.1e-30 135.6 81 79.0
BcaB01g00536 Brassica carinata HOM05D004480 ORTHO05D005546 4.1e-30 135.6 81 79.0
BcaC06g33042 Brassica carinata HOM05D004480 ORTHO05D005546 4.1e-30 135.6 81 80.2
CDE09G0719 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 4.1e-30 135.6 81 81.5
Oeu061379.1 Olea europaea HOM05D004480 ORTHO05D005546 4.1e-30 135.6 81 77.8
MSTRG.22059 Avicennia marina HOM05D004480 ORTHO05D005546 5.3e-30 135.2 81 79.0
Cc03_g16200 Coffea canephora HOM05D004480 ORTHO05D005546 5.3e-30 135.2 81 79.0
Dinv39175 Davidia involucrata HOM05D004480 ORTHO05D005546 5.3e-30 135.2 81 79.0
Migut.O00494 Erythranthe guttata HOM05D004480 ORTHO05D005546 5.3e-30 135.2 81 79.0
Nn7g35785 Nelumbo nucifera HOM05D004480 ORTHO05D005546 5.3e-30 135.2 81 76.5
Os01g0888700 Oryza sativa ssp. japonica HOM05D004480 ORTHO05D005546 5.3e-30 135.2 81 80.2
Solyc01g007120.3 Solanum lycopersicum HOM05D004480 ORTHO05D005546 5.3e-30 135.2 81 80.2
Sopen01g003100 Solanum pennellii HOM05D004480 ORTHO05D005546 5.3e-30 135.2 81 80.2
Haze_11102 Corylus avellana HOM05D004480 ORTHO05D005546 6.9e-30 134.8 81 79.0
Manes.17G005700 Manihot esculenta HOM05D004480 ORTHO05D005546 6.9e-30 134.8 81 79.0
Medtr4g094615 Medicago truncatula HOM05D004480 ORTHO05D005546 6.9e-30 134.8 81 79.0
SalBow1G2458 Salvia bowleyana HOM05D004480 ORTHO05D005546 6.9e-30 134.8 81 80.2
SalBow6G1632 Salvia bowleyana HOM05D004480 ORTHO05D005546 6.9e-30 134.8 81 80.2
Dinv41802 Davidia involucrata HOM05D004480 ORTHO05D005546 9.1e-30 134.4 81 79.0
Glyma.11G213400 Glycine max HOM05D004480 ORTHO05D005546 9.1e-30 134.4 81 79.0
Glyma.18G043300 Glycine max HOM05D004480 ORTHO05D005546 9.1e-30 134.4 81 79.0
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 9.1e-30 134.4 81 79.0
Sc03g0007800 Simmondsia chinensis HOM05D004480 ORTHO05D005546 9.1e-30 134.4 81 79.0
VMungo1309G1911 Vigna mungo HOM05D004480 ORTHO05D005546 9.1e-30 134.4 81 79.0
VMungo1383G0315 Vigna mungo HOM05D004480 ORTHO05D005546 9.1e-30 134.4 81 79.0
Duzib128G0969 Durio zibethinus HOM05D004480 ORTHO05D005546 1.2e-29 134.0 81 77.8
Lju124A7T24 Lonicera japonica HOM05D004480 ORTHO05D005546 1.2e-29 134.0 81 77.8
SGA_v2.0_scaffold19G08907 Striga asiatica HOM05D004480 ORTHO05D005546 1.2e-29 134.0 81 77.8
Thecc.05G221800 Theobroma cacao HOM05D004480 ORTHO05D005546 1.2e-29 134.0 81 77.8
TPR.G4936 Trifolium pratense HOM05D004480 ORTHO05D005546 1.2e-29 134.0 81 79.0
Ca_17076_v3 Cicer arietinum L. HOM05D004480 ORTHO05D005546 1.5e-29 133.7 81 77.8
Mapoly0052s0036 Marchantia polymorpha HOM05D004480 ORTHO05D005546 1.5e-29 133.7 81 76.5
Prupe.5G084300 Prunus persica HOM05D004480 ORTHO05D005546 1.5e-29 133.7 81 79.0
CSS0010781 Camellia sinensis var. sinensis HOM05D004480 ORTHO05D005546 2.0e-29 133.3 81 76.5
CARHR160850 Cardamine hirsuta HOM05D004480 ORTHO05D005546 2.0e-29 133.3 81 77.8
Cpa.g.sc9.237 Carica papaya HOM05D004480 ORTHO05D005546 2.0e-29 133.3 81 77.8
ClCG00G001030 Citrullus lanatus HOM05D004480 ORTHO05D005546 2.0e-29 133.3 81 79.0
MELO3C013997.2 Cucumis melo HOM05D004480 ORTHO05D005546 2.0e-29 133.3 81 79.0
CsaV3_3G003300 Cucumis sativus L. HOM05D004480 ORTHO05D005546 2.0e-29 133.3 81 79.0
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 2.0e-29 133.3 81 77.8
Sed0006001 Sechium edule HOM05D004480 ORTHO05D005546 2.0e-29 133.3 81 79.0
ATR0743G007 Amborella trichopoda HOM05D004480 ORTHO05D005546 2.6e-29 132.9 81 77.8
AL5G31690 Arabidopsis lyrata HOM05D004480 ORTHO05D005546 2.6e-29 132.9 81 77.8
CBR_g22944 Chara braunii HOM05D004480 ORTHO05D005546 2.6e-29 132.9 81 75.3
Migut.N03010 Erythranthe guttata HOM05D004480 ORTHO05D005546 2.6e-29 132.9 81 77.8
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.6e-29 132.9 91 70.3
HanXRQChr14g0458331 Helianthus annuus HOM05D004480 ORTHO05D005546 2.6e-29 132.9 81 77.8
HanXRQChr15g0464981 Helianthus annuus HOM05D004480 ORTHO05D005546 2.6e-29 132.9 81 77.8
HanXRQChr15g0465141 Helianthus annuus HOM05D004480 ORTHO05D005546 2.6e-29 132.9 81 77.8
AT3G51270 Arabidopsis thaliana HOM05D004480 ORTHO05D005546 3.4e-29 132.5 81 77.8
Thhalv10010355m.g Eutrema salsugineum HOM05D004480 ORTHO05D005546 3.4e-29 132.5 81 77.8
Gohir.A08G013400 Gossypium hirsutum HOM05D004480 ORTHO05D005546 3.4e-29 132.5 81 77.8
Gohir.D08G023800 Gossypium hirsutum HOM05D004480 ORTHO05D005546 3.4e-29 132.5 81 77.8
Gorai.004G019100 Gossypium raimondii HOM05D004480 ORTHO05D005546 3.4e-29 132.5 81 77.8
Nitab4.5_0002686g0020 Nicotiana tabacum HOM05D004480 ORTHO05D005546 3.4e-29 132.5 81 76.5
Phvul.001G227600 Phaseolus vulgaris HOM05D004480 ORTHO05D005546 3.4e-29 132.5 81 77.8
TWI74G1000 Tripterygium wilfordii HOM05D004480 ORTHO05D005546 3.4e-29 132.5 96 67.7
CANSAT21G2297 Cannabis sativa HOM05D004480 ORTHO05D005546 4.5e-29 132.1 81 76.5
Carub.0005s1764 Capsella rubella HOM05D004480 ORTHO05D005546 4.5e-29 132.1 81 76.5
ECA248G1292 Erigeron canadensis HOM05D004480 ORTHO05D005546 4.5e-29 132.1 81 77.8
Sed0005158 Sechium edule HOM05D004480 ORTHO05D005546 4.5e-29 132.1 81 77.8
Zm00001eb365940 Zea mays HOM05D004480 ORTHO05D005546 4.5e-29 132.1 81 79.0
COL.COLO4_23990 Corchorus olitorius HOM05D004480 ORTHO05D005546 5.9e-29 131.7 81 75.3
Lalb_Chr08g0233091 Lupinus albus HOM05D004480 ORTHO05D005546 5.9e-29 131.7 81 77.8
PSO675G8718 Papaver somniferum HOM05D004480 ORTHO05D005546 5.9e-29 131.7 81 77.8
PSO732G0488 Papaver somniferum HOM05D004480 ORTHO05D005546 5.9e-29 131.7 81 77.8
Psat7g090480 Pisum sativum HOM05D004480 ORTHO05D005546 5.9e-29 131.7 81 77.8
RcHm_v2.0_Chr1g0334711 Rosa chinensis HOM05D004480 ORTHO05D005546 5.9e-29 131.7 81 76.5
RcHm_v2.0_Chr7g0210541 Rosa chinensis HOM05D004480 ORTHO05D005546 5.9e-29 131.7 81 76.5
Hund12181 Selenicereus undatus HOM05D004480 ORTHO05D005546 5.9e-29 131.7 81 76.5
SGA_v2.0_scaffold25G11023 Striga asiatica HOM05D004480 ORTHO05D005546 5.9e-29 131.7 81 76.5
vmacro00734 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 5.9e-29 131.7 81 77.8
CiPaw.01G203500 Carya illinoinensis HOM05D004480 ORTHO05D005546 7.7e-29 131.3 96 69.8
DCAR_011737 Daucus carota HOM05D004480 ORTHO05D005546 7.7e-29 131.3 81 75.3
FvH4_7g06440 Fragaria vesca HOM05D004480 ORTHO05D005546 7.7e-29 131.3 81 75.3
FAN01G1951 Fragaria x ananassa HOM05D004480 ORTHO05D005546 7.7e-29 131.3 81 75.3
FAN03G0050 Fragaria x ananassa HOM05D004480 ORTHO05D005546 7.7e-29 131.3 81 75.3
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 7.7e-29 131.3 81 75.3
THA.LOC104827565 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 7.7e-29 131.3 81 77.8
vmacro20035 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 7.7e-29 131.3 81 76.5
Ciclev10008180m.g Citrus clementina HOM05D004480 ORTHO05D005546 1.0e-28 131.0 81 77.8
AUR62020079 Chenopodium quinoa HOM05D004480 ORTHO05D005546 1.3e-28 130.6 81 76.5
GSVIVG01038269001 Vitis vinifera HOM05D004480 ORTHO05D005546 1.3e-28 130.6 81 77.8
AUR62001702 Chenopodium quinoa HOM05D004480 ORTHO05D005546 1.7e-28 130.2 81 76.5
FvH4_4g10760 Fragaria vesca HOM05D004480 ORTHO05D005546 1.7e-28 130.2 81 74.1
FAN12G1968 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.7e-28 130.2 81 74.1
FAN12G3644 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.7e-28 130.2 81 74.1
THA.LOC104802357 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 1.7e-28 130.2 81 76.5
Sp5g10950 Schrenkiella parvula HOM05D004480 ORTHO05D005546 2.2e-28 129.8 81 76.5
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 2.9e-28 129.4 81 76.5
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 2.9e-28 129.4 81 75.3
Zm00001eb145320 Zea mays HOM05D004480 ORTHO05D005546 5.0e-28 128.6 81 76.5
Aqoxy2G00126 Aquilegia oxysepala HOM05D004480 ORTHO05D005546 2.7e-26 122.9 82 73.2
MCO09G317 Micromonas commoda HOM05D004480 ORTHO05D005546 2.3e-25 119.8 81 67.9
SMO327G0006 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 2.3e-25 119.8 70 81.4
SHI53263 Sapria himalayana HOM05D004480 ORTHO05D005546 3.9e-25 119.0 85 70.6
CDE09G0674 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.1e-24 117.5 72 77.8
Oeu019179.1 Olea europaea HOM05D004480 ORTHO05D005546 7.4e-24 114.8 128 50.0
CDE09G1409 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 8.2e-23 111.3 62 83.9
PRCOL_00001861 Prasinoderma coloniale HOM05D004480 ORTHO05D005546 8.2e-23 111.3 81 66.7
Lsat_1_v5_gn_5_33821 Lactuca sativa HOM05D004480 ORTHO05D005546 1.8e-22 110.2 67 74.6
CAN.G574.17 Capsicum annuum HOM05D004480 ORTHO05D005546 3.1e-22 109.4 67 77.6
Rhsim09G0001300 Rhododendron simsii HOM05D004480 ORTHO05D005546 5.3e-22 108.6 63 81.0
CDE09G0134 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.0e-20 104.4 62 79.0
BolC8t50268H Brassica oleracea HOM05D004480 ORTHO05D005546 1.2e-18 97.4 58 79.3
C08p26540 Brassica napus HOM05D004480 ORTHO05D005546 4.7e-18 95.5 57 78.9
ClCG10G003270 Citrullus lanatus HOM05D004480 ORTHO05D005546 7.0e-14 81.6 81 58.0
unitig_62.g23773 Utricularia gibba HOM05D004480 ORTHO05D005546 1.2e-13 80.9 81 55.6
Duzib177G0198 Durio zibethinus HOM05D004480 ORTHO05D005546 6.8e-09 65.1 37 83.8
Cfa009489 Carpinus fangiana HOM05D004480 ORTHO05D005546 5.7e-08 62.0 85 37.6


User provided reference genes

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