Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_14070 Sequoiadendron giganteum HOM05D047898 ORTHO05D000212 5.6e-56 220.7 112 100.0
SEGI_21493 Sequoiadendron giganteum HOM05D047898 ORTHO05D000212 3.5e-50 201.4 112 92.0
SEGI_29704 Sequoiadendron giganteum HOM05D000339 ORTHO05D000212 2.2e-15 85.9 144 39.6
SEGI_09303 Sequoiadendron giganteum HOM05D000339 ORTHO05D000212 6.5e-12 74.3 70 60.0
SEGI_06228 Sequoiadendron giganteum HOM05D063011 ORTHO05D000212 1.1e-11 73.6 138 37.0
SEGI_13319 Sequoiadendron giganteum HOM05D000339 ORTHO05D000212 1.5e-11 73.2 146 38.4
SEGI_27975 Sequoiadendron giganteum HOM05D000339 ORTHO05D000212 1.2e-10 70.1 133 39.1
SEGI_34992 Sequoiadendron giganteum HOM05D000339 ORTHO05D000212 1.2e-10 70.1 133 39.1
SEGI_27436 Sequoiadendron giganteum HOM05D000339 ORTHO05D000212 1.8e-09 66.2 133 37.6
SEGI_38461 Sequoiadendron giganteum HOM05D000339 ORTHO05D000212 5.2e-09 64.7 107 41.1
C08p45270 Brassica napus HOM05D000339 ORTHO05D000212 2.0e-08 62.8 46 60.9
BolC8t52076H Brassica oleracea HOM05D000339 ORTHO05D000212 2.0e-08 62.8 46 60.9
Thhalv10009654m.g Eutrema salsugineum HOM05D000339 ORTHO05D000212 2.0e-08 62.8 46 60.9
A09p61690 Brassica napus HOM05D000339 ORTHO05D000212 4.4e-08 61.6 46 58.7
BraA09t41541Z Brassica rapa HOM05D000339 ORTHO05D000212 4.4e-08 61.6 46 58.7
SalBow1G4625 Salvia bowleyana HOM05D000339 ORTHO05D000212 1.7e-07 59.7 55 54.5
GSVIVG01008424001 Vitis vinifera HOM05D000339 ORTHO05D000212 1.7e-07 59.7 103 35.9
CDE05G3341 Ceratophyllum demersum HOM05D000339 ORTHO05D000212 2.2e-07 59.3 46 56.5
Duzib205G0598 Durio zibethinus HOM05D000339 ORTHO05D000212 2.2e-07 59.3 96 38.5
SEGI_32009 Sequoiadendron giganteum HOM05D000339 ORTHO05D000212 2.2e-07 59.3 67 52.2
Aa31LG8G4860 Aethionema arabicum HOM05D000339 ORTHO05D000212 2.8e-07 58.9 62 41.9
SEGI_05875 Sequoiadendron giganteum HOM05D000339 ORTHO05D000212 2.8e-07 58.9 67 53.7
CDE05G0515 Ceratophyllum demersum HOM05D000339 ORTHO05D000212 3.7e-07 58.5 46 58.7
Migut.D01555 Erythranthe guttata HOM05D000339 ORTHO05D000212 3.7e-07 58.5 57 50.9
MBI12_g38294_MAGBIO Magnolia biondii HOM05D000339 ORTHO05D000212 3.7e-07 58.5 53 54.7
MBI12_g41015_MAGBIO Magnolia biondii HOM05D000339 ORTHO05D000212 3.7e-07 58.5 53 54.7
Ah.01g013350 Amaranthus hybridus HOM05D000339 ORTHO05D000212 4.8e-07 58.2 70 44.3
MSTRG.9298 Avicennia marina HOM05D000339 ORTHO05D000212 4.8e-07 58.2 79 41.8
Duzib084G0984 Durio zibethinus HOM05D000339 ORTHO05D000212 4.8e-07 58.2 96 36.5
RcHm_v2.0_Chr7g0178511 Rosa chinensis HOM05D000339 ORTHO05D000212 4.8e-07 58.2 56 50.0
SEGI_26105 Sequoiadendron giganteum HOM05D000339 ORTHO05D000212 4.8e-07 58.2 62 50.0
HanXRQChr05g0143801 Helianthus annuus HOM05D000339 ORTHO05D000212 6.3e-07 57.8 57 52.6
unitig_747.g21332 Utricularia gibba HOM05D000339 ORTHO05D000212 6.3e-07 57.8 49 55.1
Actinidia28130 Actinidia chinensis HOM05D000339 ORTHO05D000212 8.3e-07 57.4 56 50.0
Cfa019667 Carpinus fangiana HOM05D000339 ORTHO05D000212 8.3e-07 57.4 93 37.6
ClCG04G010670 Citrullus lanatus HOM05D000339 ORTHO05D000212 8.3e-07 57.4 91 38.5
PSO017G5838 Papaver somniferum HOM05D000339 ORTHO05D000212 8.3e-07 57.4 60 48.3
THA.LOC104821830 Tarenaya hassleriana HOM05D000339 ORTHO05D000212 8.3e-07 57.4 59 49.2
Aqoxy3G00084 Aquilegia oxysepala HOM05D000339 ORTHO05D000212 1.1e-06 57.0 49 53.1
EL10As7g23761 Beta vulgaris HOM05D000339 ORTHO05D000212 1.1e-06 57.0 94 37.2
CAN.G1129.56 Capsicum annuum HOM05D000339 ORTHO05D000212 1.1e-06 57.0 49 55.1
Haze_18839 Corylus avellana HOM05D000339 ORTHO05D000212 1.1e-06 57.0 89 39.3
Duzib068G1069 Durio zibethinus HOM05D000339 ORTHO05D000212 1.1e-06 57.0 56 50.0
Eucgr.B00945 Eucalyptus grandis HOM05D000339 ORTHO05D000212 1.1e-06 57.0 83 41.0
Gohir.A12G269100 Gossypium hirsutum HOM05D000339 ORTHO05D000212 1.1e-06 57.0 56 50.0
Gohir.D12G269500 Gossypium hirsutum HOM05D000339 ORTHO05D000212 1.1e-06 57.0 56 50.0
Gorai.008G289800 Gossypium raimondii HOM05D000339 ORTHO05D000212 1.1e-06 57.0 56 50.0
Nitab4.5_0001456g0200 Nicotiana tabacum HOM05D000339 ORTHO05D000212 1.1e-06 57.0 49 55.1
Nitab4.5_0016590g0010 Nicotiana tabacum HOM05D000339 ORTHO05D000212 1.1e-06 57.0 49 55.1
PSO478G1004 Papaver somniferum HOM05D000339 ORTHO05D000212 1.1e-06 57.0 60 48.3
Peaxi162Scf00683g00044 Petunia axillaris HOM05D000339 ORTHO05D000212 1.1e-06 57.0 49 55.1
Solyc03g118770.4 Solanum lycopersicum HOM05D000339 ORTHO05D000212 1.1e-06 57.0 49 55.1
Sopen03g037710 Solanum pennellii HOM05D000339 ORTHO05D000212 1.1e-06 57.0 49 55.1
PGSC0003DMG400005670 Solanum tuberosum HOM05D000339 ORTHO05D000212 1.1e-06 57.0 49 55.1
Cpa.g.sc3.402 Carica papaya HOM05D000339 ORTHO05D000212 1.4e-06 56.6 56 50.0
Cc04_g06330 Coffea canephora HOM05D000339 ORTHO05D000212 1.4e-06 56.6 49 55.1
MELO3C002129.2 Cucumis melo HOM05D000339 ORTHO05D000212 1.4e-06 56.6 49 53.1
CsaV3_1G007120 Cucumis sativus L. HOM05D000339 ORTHO05D000212 1.4e-06 56.6 49 53.1
Dinv27618 Davidia involucrata HOM05D000339 ORTHO05D000212 1.4e-06 56.6 49 55.1
FvH4_5g17270 Fragaria vesca HOM05D000339 ORTHO05D000212 1.4e-06 56.6 56 48.2
FAN04G2675 Fragaria x ananassa HOM05D000339 ORTHO05D000212 1.4e-06 56.6 56 48.2
FAN08G2756 Fragaria x ananassa HOM05D000339 ORTHO05D000212 1.4e-06 56.6 56 48.2
FAN13G1871 Fragaria x ananassa HOM05D000339 ORTHO05D000212 1.4e-06 56.6 56 48.2
FAN18G3640 Fragaria x ananassa HOM05D000339 ORTHO05D000212 1.4e-06 56.6 56 48.2
HanXRQChr12g0381151 Helianthus annuus HOM05D000339 ORTHO05D000212 1.4e-06 56.6 49 55.1
Lalb_Chr05g0221701 Lupinus albus HOM05D000339 ORTHO05D000212 1.4e-06 56.6 87 35.6
Nn3g18264 Nelumbo nucifera HOM05D000339 ORTHO05D000212 1.4e-06 56.6 64 45.3
SalBow2G3481 Salvia bowleyana HOM05D000339 ORTHO05D000212 1.4e-06 56.6 69 42.0
SEGI_38625 Sequoiadendron giganteum HOM05D000339 ORTHO05D000212 1.4e-06 56.6 75 44.0
Sc12g0007200 Simmondsia chinensis HOM05D000339 ORTHO05D000212 1.4e-06 56.6 49 53.1
unitig_0.g2229 Utricularia gibba HOM05D000339 ORTHO05D000212 1.4e-06 56.6 46 60.9
CSS0009726 Camellia sinensis var. sinensis HOM05D000339 ORTHO05D000212 1.8e-06 56.2 49 55.1
CSS0023556 Camellia sinensis var. sinensis HOM05D000339 ORTHO05D000212 1.8e-06 56.2 49 55.1
COL.COLO4_37684 Corchorus olitorius HOM05D000339 ORTHO05D000212 1.8e-06 56.2 57 49.1
Migut.L00355 Erythranthe guttata HOM05D000339 ORTHO05D000212 1.8e-06 56.2 85 38.8
Lsat_1_v5_gn_5_167661 Lactuca sativa HOM05D000339 ORTHO05D000212 1.8e-06 56.2 62 46.8
Lalb_Chr18g0052701 Lupinus albus HOM05D000339 ORTHO05D000212 1.8e-06 56.2 85 38.8
Oeu046167.1 Olea europaea HOM05D000339 ORTHO05D000212 1.8e-06 56.2 49 55.1
SGA_v2.0_scaffold5199G54609 Striga asiatica HOM05D000339 ORTHO05D000212 1.8e-06 56.2 89 34.8
Thecc.03G054500 Theobroma cacao HOM05D000339 ORTHO05D000212 1.8e-06 56.2 54 51.9
TWI81G0853 Tripterygium wilfordii HOM05D000339 ORTHO05D000212 1.8e-06 56.2 55 52.7
unitig_699.g19659 Utricularia gibba HOM05D000339 ORTHO05D000212 1.8e-06 56.2 49 53.1
Atru.chr9.1742 Acer truncatum HOM05D000339 ORTHO05D000212 2.4e-06 55.8 57 49.1
MSTRG.2161 Avicennia marina HOM05D000339 ORTHO05D000212 2.4e-06 55.8 64 43.8
CDE06G2692 Ceratophyllum demersum HOM05D000339 ORTHO05D000212 2.4e-06 55.8 49 53.1
CDE07G1275 Ceratophyllum demersum HOM05D000339 ORTHO05D000212 2.4e-06 55.8 49 53.1
Ca_17194_v3 Cicer arietinum L. HOM05D000339 ORTHO05D000212 2.4e-06 55.8 59 45.8
Lsat_1_v5_gn_5_72381 Lactuca sativa HOM05D000339 ORTHO05D000212 2.4e-06 55.8 56 50.0
Lsat_1_v5_gn_8_78041 Lactuca sativa HOM05D000339 ORTHO05D000212 2.4e-06 55.8 59 49.2
QL10p028490 Quercus lobata HOM05D000339 ORTHO05D000212 2.4e-06 55.8 61 45.9
SEGI_20070 Sequoiadendron giganteum HOM05D000339 ORTHO05D000212 2.4e-06 55.8 75 44.0
SGA_v2.0_scaffold234G43613 Striga asiatica HOM05D000339 ORTHO05D000212 2.4e-06 55.8 49 53.1
AL143U10010 Arabidopsis lyrata HOM05D000339 ORTHO05D000212 3.1e-06 55.5 49 51.0
AL3G31160 Arabidopsis lyrata HOM05D000339 ORTHO05D000212 3.1e-06 55.5 49 51.0
AT3G18010 Arabidopsis thaliana HOM05D000339 ORTHO05D000212 3.1e-06 55.5 49 51.0
Carub.0003s1772 Capsella rubella HOM05D000339 ORTHO05D000212 3.1e-06 55.5 49 51.0
CARHR093320 Cardamine hirsuta HOM05D000339 ORTHO05D000212 3.1e-06 55.5 58 46.6
AUR62017610 Chenopodium quinoa HOM05D000339 ORTHO05D000212 3.1e-06 55.5 49 53.1
Thhalv10022042m.g Eutrema salsugineum HOM05D000339 ORTHO05D000212 3.1e-06 55.5 49 51.0
Lj2g0012105 Lotus japonicus HOM05D000339 ORTHO05D000212 3.1e-06 55.5 49 53.1
MD14G1235800 Malus domestica HOM05D000339 ORTHO05D000212 3.1e-06 55.5 74 39.2
Manes.06G007300 Manihot esculenta HOM05D000339 ORTHO05D000212 3.1e-06 55.5 49 53.1
Manes.14G170900 Manihot esculenta HOM05D000339 ORTHO05D000212 3.1e-06 55.5 54 50.0
Nn4g24211 Nelumbo nucifera HOM05D000339 ORTHO05D000212 3.1e-06 55.5 49 53.1
Potri.012G047700 Populus trichocarpa HOM05D000339 ORTHO05D000212 3.1e-06 55.5 59 45.8
SEGI_05318 Sequoiadendron giganteum HOM05D000339 ORTHO05D000212 3.1e-06 55.5 45 57.8
AL5G10490 Arabidopsis lyrata HOM05D000339 ORTHO05D000212 4.1e-06 55.1 50 50.0
MSTRG.4575 Avicennia marina HOM05D000339 ORTHO05D000212 4.1e-06 55.1 54 50.0
C09p30160 Brassica napus HOM05D000339 ORTHO05D000212 4.1e-06 55.1 53 50.9
Carub.0005s0046 Capsella rubella HOM05D000339 ORTHO05D000212 4.1e-06 55.1 74 41.9
Lj4g0005482 Lotus japonicus HOM05D000339 ORTHO05D000212 4.1e-06 55.1 64 43.8
TAR374G1529 Trochodendron aralioides HOM05D000339 ORTHO05D000212 4.1e-06 55.1 46 54.3
BcaB04g18976 Brassica carinata HOM05D000339 ORTHO05D000212 5.4e-06 54.7 51 49.0
CiPaw.15G142700 Carya illinoinensis HOM05D000339 ORTHO05D000212 5.4e-06 54.7 64 43.8
DCAR_023274 Daucus carota HOM05D000339 ORTHO05D000212 5.4e-06 54.7 49 53.1
Glyma.05G245900 Glycine max HOM05D000339 ORTHO05D000212 5.4e-06 54.7 49 51.0
Glyma.08G053702 Glycine max HOM05D000339 ORTHO05D000212 5.4e-06 54.7 49 51.0
Lalb_Chr16g0387021 Lupinus albus HOM05D000339 ORTHO05D000212 5.4e-06 54.7 49 51.0
PSO384G2010 Papaver somniferum HOM05D000339 ORTHO05D000212 5.4e-06 54.7 64 48.4
Phvul.002G329500 Phaseolus vulgaris HOM05D000339 ORTHO05D000212 5.4e-06 54.7 49 51.0
Psat7g002400 Pisum sativum HOM05D000339 ORTHO05D000212 5.4e-06 54.7 49 51.0
Potri.015G039100 Populus trichocarpa HOM05D000339 ORTHO05D000212 5.4e-06 54.7 57 47.4
PGR083G0002 Punica granatum HOM05D000339 ORTHO05D000212 5.4e-06 54.7 49 53.1
Sabra15G0038100 Salix brachista HOM05D000339 ORTHO05D000212 5.4e-06 54.7 57 47.4
Sabra15G0070900 Salix brachista HOM05D000339 ORTHO05D000212 5.4e-06 54.7 57 47.4
SEGI_11467 Sequoiadendron giganteum HOM05D000339 ORTHO05D000212 5.4e-06 54.7 73 41.1
TPR.G1426 Trifolium pratense HOM05D000339 ORTHO05D000212 5.4e-06 54.7 49 51.0
TWI60G1718 Tripterygium wilfordii HOM05D000339 ORTHO05D000212 5.4e-06 54.7 49 53.1
VMungo0251G0580 Vigna mungo HOM05D000339 ORTHO05D000212 5.4e-06 54.7 49 51.0
AT2G01500 Arabidopsis thaliana HOM05D000339 ORTHO05D000212 7.0e-06 54.3 47 51.1
BcaB06g25866 Brassica carinata HOM05D000339 ORTHO05D000212 7.0e-06 54.3 49 51.0
BcaC01g03716 Brassica carinata HOM05D000339 ORTHO05D000212 7.0e-06 54.3 49 51.0
BcaC05g28726 Brassica carinata HOM05D000339 ORTHO05D000212 7.0e-06 54.3 49 51.0
A03p40490 Brassica napus HOM05D000339 ORTHO05D000212 7.0e-06 54.3 49 51.0
A05p31820 Brassica napus HOM05D000339 ORTHO05D000212 7.0e-06 54.3 49 51.0
C03p49330 Brassica napus HOM05D000339 ORTHO05D000212 7.0e-06 54.3 49 51.0
C05p48300 Brassica napus HOM05D000339 ORTHO05D000212 7.0e-06 54.3 49 51.0
BolC3t17224H Brassica oleracea HOM05D000339 ORTHO05D000212 7.0e-06 54.3 49 51.0
BolC5t33563H Brassica oleracea HOM05D000339 ORTHO05D000212 7.0e-06 54.3 49 51.0
BraA03t13208Z Brassica rapa HOM05D000339 ORTHO05D000212 7.0e-06 54.3 49 51.0
BraA05t22013Z Brassica rapa HOM05D000339 ORTHO05D000212 7.0e-06 54.3 49 51.0
CiPaw.16G093000 Carya illinoinensis HOM05D000339 ORTHO05D000212 7.0e-06 54.3 57 47.4
ECA233G5080 Erigeron canadensis HOM05D000339 ORTHO05D000212 7.0e-06 54.3 49 53.1
MD06G1231300 Malus domestica HOM05D000339 ORTHO05D000212 7.0e-06 54.3 49 51.0
Oeu015085.1 Olea europaea HOM05D000339 ORTHO05D000212 7.0e-06 54.3 88 38.6
PSO339G2470 Papaver somniferum HOM05D000339 ORTHO05D000212 7.0e-06 54.3 64 48.4
Prupe.5G232600 Prunus persica HOM05D000339 ORTHO05D000212 7.0e-06 54.3 49 51.0
Sp3g16120 Schrenkiella parvula HOM05D000339 ORTHO05D000212 7.0e-06 54.3 49 51.0
Sed0002793 Sechium edule HOM05D000339 ORTHO05D000212 7.0e-06 54.3 49 51.0
Sed0005608 Sechium edule HOM05D000339 ORTHO05D000212 7.0e-06 54.3 49 51.0
Actinidia06842 Actinidia chinensis HOM05D000339 ORTHO05D000212 9.1e-06 53.9 63 42.9
ATR0564G332 Amborella trichopoda HOM05D000339 ORTHO05D000212 9.1e-06 53.9 46 56.5
arahy.Tifrunner.gnm1.ann1.2E2A40 Arachis hypogaea HOM05D000339 ORTHO05D000212 9.1e-06 53.9 49 51.0
arahy.Tifrunner.gnm1.ann1.GA9U6U Arachis hypogaea HOM05D000339 ORTHO05D000212 9.1e-06 53.9 49 51.0
BraA09t37942Z Brassica rapa HOM05D000339 ORTHO05D000212 9.1e-06 53.9 46 54.3
Dinv14418 Davidia involucrata HOM05D000339 ORTHO05D000212 9.1e-06 53.9 46 54.3
Thhalv10001174m.g Eutrema salsugineum HOM05D000339 ORTHO05D000212 9.1e-06 53.9 46 52.2
Rhsim04G0016800 Rhododendron simsii HOM05D000339 ORTHO05D000212 9.1e-06 53.9 65 46.2
SalBow8G2225 Salvia bowleyana HOM05D000339 ORTHO05D000212 9.1e-06 53.9 49 51.0
SalBow8G2444 Salvia bowleyana HOM05D000339 ORTHO05D000212 9.1e-06 53.9 49 51.0
Sc15g0005950 Simmondsia chinensis HOM05D000339 ORTHO05D000212 9.1e-06 53.9 58 51.7
HPP92_010822 Vanilla planifolia HOM05D000339 ORTHO05D000212 9.1e-06 53.9 66 45.5


User provided reference genes

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