Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_13868 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 3.4e-39 164.5 80 100.0
CDE02G2399 Ceratophyllum demersum HOM05D006474 ORTHO05D007994 2.5e-21 105.1 63 74.6
GSVIVG01029282001 Vitis vinifera HOM05D006474 ORTHO05D007994 2.5e-21 105.1 61 80.3
COL.COLO4_37571 Corchorus olitorius HOM05D006474 ORTHO05D007994 1.2e-20 102.8 63 76.2
TAR383G1087 Trochodendron aralioides HOM05D006474 ORTHO05D007994 1.6e-20 102.4 61 77.0
Thecc.04G204000 Theobroma cacao HOM05D006474 ORTHO05D007994 2.1e-20 102.1 63 74.6
Ca_21263_v3 Cicer arietinum L. HOM05D006474 ORTHO05D007994 2.7e-20 101.7 61 75.4
Duzib170G0180 Durio zibethinus HOM05D006474 ORTHO05D007994 3.6e-20 101.3 63 71.4
Gohir.A05G408600 Gossypium hirsutum HOM05D006474 ORTHO05D007994 3.6e-20 101.3 63 71.4
Gohir.D04G006800 Gossypium hirsutum HOM05D006474 ORTHO05D007994 3.6e-20 101.3 63 71.4
PSO063G0500 Papaver somniferum HOM05D006474 ORTHO05D007994 3.6e-20 101.3 65 70.8
Haze_22046 Corylus avellana HOM05D006474 ORTHO05D007994 4.7e-20 100.9 62 74.2
ECA236G3875 Erigeron canadensis HOM05D006474 ORTHO05D007994 4.7e-20 100.9 62 71.0
Lsat_1_v5_gn_8_68301 Lactuca sativa HOM05D006474 ORTHO05D007994 4.7e-20 100.9 64 70.3
Lj4g0020492 Lotus japonicus HOM05D006474 ORTHO05D007994 6.1e-20 100.5 62 72.6
ATR0580G130 Amborella trichopoda HOM05D006474 ORTHO05D007994 1.0e-19 99.8 62 75.8
MBI14_g10727_MAGBIO Magnolia biondii HOM05D006474 ORTHO05D007994 1.0e-19 99.8 62 72.6
Aqoxy7G02891 Aquilegia oxysepala HOM05D006474 ORTHO05D007994 1.4e-19 99.4 61 75.4
Sc14g0003050 Simmondsia chinensis HOM05D006474 ORTHO05D007994 1.4e-19 99.4 61 72.1
TPR.G5392 Trifolium pratense HOM05D006474 ORTHO05D007994 1.4e-19 99.4 61 75.4
MD13G1241100 Malus domestica HOM05D006474 ORTHO05D007994 1.8e-19 99.0 61 73.8
Hund22985 Selenicereus undatus HOM05D006474 ORTHO05D007994 1.8e-19 99.0 65 69.2
vmacro20800 Vaccinium macrocarpon HOM05D006474 ORTHO05D007994 1.8e-19 99.0 64 70.3
Atru.BG.24.p Acer truncatum HOM05D006474 ORTHO05D007994 2.3e-19 98.6 61 73.8
Gohir.A01G088200 Gossypium hirsutum HOM05D006474 ORTHO05D007994 2.3e-19 98.6 62 71.0
Nitab4.5_0004916g0010 Nicotiana tabacum HOM05D006474 ORTHO05D007994 2.3e-19 98.6 63 71.4
Glyma.17G057700 Glycine max HOM05D006474 ORTHO05D007994 3.0e-19 98.2 61 73.8
Prupe.1G072500 Prunus persica HOM05D006474 ORTHO05D007994 3.0e-19 98.2 60 75.0
CSS0012665 Camellia sinensis var. sinensis HOM05D006474 ORTHO05D007994 3.9e-19 97.8 63 73.0
Nitab4.5_0000028g0400 Nicotiana tabacum HOM05D006474 ORTHO05D007994 3.9e-19 97.8 63 71.4
Thecc.09G192500 Theobroma cacao HOM05D006474 ORTHO05D007994 3.9e-19 97.8 63 71.4
DCAR_020143 Daucus carota HOM05D006474 ORTHO05D007994 5.1e-19 97.4 65 70.8
HanXRQChr06g0181391 Helianthus annuus HOM05D006474 ORTHO05D007994 5.1e-19 97.4 62 67.7
RcHm_v2.0_Chr4g0398871 Rosa chinensis HOM05D006474 ORTHO05D007994 5.1e-19 97.4 61 70.5
Rhsim01G0114400 Rhododendron simsii HOM05D006474 ORTHO05D007994 6.7e-19 97.1 63 71.4
arahy.Tifrunner.gnm1.ann1.HVXZ0P Arachis hypogaea HOM05D006474 ORTHO05D007994 8.8e-19 96.7 61 73.8
Os06g0698785 Oryza sativa ssp. japonica HOM05D006474 ORTHO05D007994 8.8e-19 96.7 60 73.3
PGR142G0270 Punica granatum HOM05D006474 ORTHO05D007994 8.8e-19 96.7 61 72.1
arahy.Tifrunner.gnm1.ann1.Z6GGIF Arachis hypogaea HOM05D006474 ORTHO05D007994 1.1e-18 96.3 61 73.8
Cpa.g.sc115.63 Carica papaya HOM05D006474 ORTHO05D007994 1.1e-18 96.3 61 72.1
Dinv41197 Davidia involucrata HOM05D006474 ORTHO05D007994 1.1e-18 96.3 61 72.1
Ah.14g085320 Amaranthus hybridus HOM05D006474 ORTHO05D007994 1.5e-18 95.9 62 71.0
EL10Ac8g19287 Beta vulgaris HOM05D006474 ORTHO05D007994 1.5e-18 95.9 61 70.5
QL02p064597 Quercus lobata HOM05D006474 ORTHO05D007994 1.5e-18 95.9 63 71.4
Ciclev10008481m.g Citrus clementina HOM05D006474 ORTHO05D007994 2.0e-18 95.5 62 74.2
FAN07G0584 Fragaria x ananassa HOM05D006474 ORTHO05D007994 2.0e-18 95.5 61 72.1
Gorai.012G008200 Gossypium raimondii HOM05D006474 ORTHO05D007994 2.0e-18 95.5 67 67.2
Manes.06G017600 Manihot esculenta HOM05D006474 ORTHO05D007994 2.0e-18 95.5 61 72.1
Medtr4g127130 Medicago truncatula HOM05D006474 ORTHO05D007994 2.0e-18 95.5 61 72.1
CiPaw.07G199100 Carya illinoinensis HOM05D006474 ORTHO05D007994 2.6e-18 95.1 63 69.8
Phvul.003G140100 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 2.6e-18 95.1 61 70.5
HPP92_010297 Vanilla planifolia HOM05D006474 ORTHO05D007994 4.4e-18 94.4 65 72.3
AUR62027431 Chenopodium quinoa HOM05D006474 ORTHO05D007994 5.7e-18 94.0 61 68.9
Lalb_Chr07g0180731 Lupinus albus HOM05D006474 ORTHO05D007994 7.4e-18 93.6 61 70.5
MSTRG.5932 Avicennia marina HOM05D006474 ORTHO05D007994 9.7e-18 93.2 61 67.2
Zm00001eb273050 Zea mays HOM05D006474 ORTHO05D007994 9.7e-18 93.2 60 70.0
AUR62031264 Chenopodium quinoa HOM05D006474 ORTHO05D007994 1.3e-17 92.8 61 68.9
Eucgr.C00087 Eucalyptus grandis HOM05D006474 ORTHO05D007994 1.3e-17 92.8 61 70.5
SalBow1G1087 Salvia bowleyana HOM05D006474 ORTHO05D007994 1.3e-17 92.8 59 71.2
Peaxi162Scf00046g00533 Petunia axillaris HOM05D006474 ORTHO05D007994 1.7e-17 92.4 63 68.3
SGA_v2.0_scaffold112G31632 Striga asiatica HOM05D006474 ORTHO05D007994 2.2e-17 92.0 61 68.9
Actinidia38505 Actinidia chinensis HOM05D006474 ORTHO05D007994 3.7e-17 91.3 68 64.7
Potri.006G072800 Populus trichocarpa HOM05D006474 ORTHO05D007994 3.7e-17 91.3 58 77.6
Sabra06G0054200 Salix brachista HOM05D006474 ORTHO05D007994 3.7e-17 91.3 58 75.9
Thhalv10025251m.g Eutrema salsugineum HOM05D006474 ORTHO05D007994 4.8e-17 90.9 61 70.5
FAN17G1111 Fragaria x ananassa HOM05D006474 ORTHO05D007994 4.8e-17 90.9 61 70.5
AagrBONN_evm.TU.Sc2ySwM_117.1622 Anthoceros agrestis HOM05D006474 ORTHO05D007994 6.3e-17 90.5 59 69.5
Migut.J00779 Erythranthe guttata HOM05D006474 ORTHO05D007994 6.3e-17 90.5 57 70.2
Sopen07g004200 Solanum pennellii HOM05D006474 ORTHO05D007994 6.3e-17 90.5 61 68.9
FvH4_4g06930 Fragaria vesca HOM05D006474 ORTHO05D007994 8.2e-17 90.1 61 70.5
FAN12G2823 Fragaria x ananassa HOM05D006474 ORTHO05D007994 8.2e-17 90.1 61 70.5
Sp7g27700 Schrenkiella parvula HOM05D006474 ORTHO05D007994 8.2e-17 90.1 61 70.5
BcaNung00499 Brassica carinata HOM05D006474 ORTHO05D007994 1.1e-16 89.7 61 70.5
MELO3C009992.2 Cucumis melo HOM05D006474 ORTHO05D007994 1.4e-16 89.4 61 68.9
Oeu035450.1 Olea europaea HOM05D006474 ORTHO05D007994 1.4e-16 89.4 67 64.2
C07p57320 Brassica napus HOM05D006474 ORTHO05D007994 2.4e-16 88.6 61 70.5
Solyc07g008310.3 Solanum lycopersicum HOM05D006474 ORTHO05D007994 2.4e-16 88.6 61 67.2
TWI32G0724 Tripterygium wilfordii HOM05D006474 ORTHO05D007994 2.4e-16 88.6 61 65.6
Lsat_1_v5_gn_9_69680 Lactuca sativa HOM05D006474 ORTHO05D007994 3.1e-16 88.2 63 63.5
PGSC0003DMG400019888 Solanum tuberosum HOM05D006474 ORTHO05D007994 5.3e-16 87.4 61 65.6
BolC7t46201H Brassica oleracea HOM05D006474 ORTHO05D007994 7.0e-16 87.0 61 68.9
Solyc07g008300.3 Solanum lycopersicum HOM05D006474 ORTHO05D007994 9.1e-16 86.7 63 63.5
Sopen07g004190 Solanum pennellii HOM05D006474 ORTHO05D007994 9.1e-16 86.7 63 63.5
A03p59310 Brassica napus HOM05D006474 ORTHO05D007994 1.2e-15 86.3 61 67.2
BraA03t14988Z Brassica rapa HOM05D006474 ORTHO05D007994 1.2e-15 86.3 61 67.2
Cc01_g11810 Coffea canephora HOM05D006474 ORTHO05D007994 1.2e-15 86.3 69 60.9
CsaV3_1G043980 Cucumis sativus L. HOM05D006474 ORTHO05D007994 1.2e-15 86.3 61 68.9
Pp3c13_13580 Physcomitrium patens HOM05D006474 ORTHO05D007994 1.2e-15 86.3 60 66.7
Mapoly0089s0013 Marchantia polymorpha HOM05D006474 ORTHO05D007994 2.0e-15 85.5 60 66.7
ClCG03G011950 Citrullus lanatus HOM05D006474 ORTHO05D007994 2.6e-15 85.1 61 67.2
SMO196G0177 Selaginella moellendorffii HOM05D006474 ORTHO05D007994 2.6e-15 85.1 60 63.3
HanXRQChr06g0181381 Helianthus annuus HOM05D006474 ORTHO05D007994 4.5e-15 84.3 62 54.8
CARHR237790 Cardamine hirsuta HOM05D006474 ORTHO05D007994 5.9e-15 84.0 61 67.2
AT4G29890 Arabidopsis thaliana HOM05D006474 ORTHO05D007994 7.7e-15 83.6 61 65.6
AL7G22360 Arabidopsis lyrata HOM05D006474 ORTHO05D007994 1.0e-14 83.2 61 65.6
Lsat_1_v5_gn_5_32380 Lactuca sativa HOM05D006474 ORTHO05D007994 1.7e-14 82.4 60 60.0
Sed0007392 Sechium edule HOM05D006474 ORTHO05D007994 2.9e-14 81.6 61 62.3
Carub.0007s1076 Capsella rubella HOM05D006474 ORTHO05D007994 1.1e-13 79.7 61 63.9
Aa31LG2G20660 Aethionema arabicum HOM05D006474 ORTHO05D007994 1.9e-13 79.0 63 57.1
Gohir.A05G306101 Gossypium hirsutum HOM05D005508 ORTHO05D007994 2.7e-12 75.1 45 68.9
Migut.J00780 Erythranthe guttata HOM05D006474 ORTHO05D007994 3.6e-12 74.7 56 60.7
Ah.03g136670 Amaranthus hybridus HOM05D006474 ORTHO05D007994 6.1e-12 73.9 60 51.7
AUR62032506 Chenopodium quinoa HOM05D006474 ORTHO05D007994 2.3e-11 72.0 60 51.7
AUR62043230 Chenopodium quinoa HOM05D006474 ORTHO05D007994 3.0e-11 71.6 60 51.7
EL10Ac6g13937 Beta vulgaris HOM05D006474 ORTHO05D007994 4.0e-11 71.2 60 51.7
MCO02G024 Micromonas commoda HOM05D006474 ORTHO05D007994 3.3e-10 68.2 57 57.9
Sed0005056 Sechium edule HOM05D006474 ORTHO05D007994 5.7e-10 67.4 61 55.7
Nn8g40661 Nelumbo nucifera HOM05D006474 ORTHO05D007994 2.8e-09 65.1 41 75.6
PRCOL_00004194 Prasinoderma coloniale HOM05D006474 ORTHO05D007994 2.7e-07 58.5 60 48.3
CAN.G403.4 Capsicum annuum HOM05D006474 ORTHO05D007994 7.7e-07 57.0 46 60.9
Gohir.A06G077600 Gossypium hirsutum HOM05D000075 ORTHO05D000264 1.0e-06 56.6 47 61.7


User provided reference genes

Program Settings