Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_13779 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 2.2e-81 305.4 144 100.0
AagrBONN_evm.TU.Sc2ySwM_117.208 Anthoceros agrestis HOM05D005421 ORTHO05D007601 1.8e-46 189.5 94 93.6
Pp3c1_35390 Physcomitrium patens HOM05D005421 ORTHO05D007601 1.8e-46 189.5 94 93.6
Mapoly0138s0022 Marchantia polymorpha HOM05D005421 ORTHO05D007601 4.0e-46 188.3 94 93.6
Aqoxy2G02863 Aquilegia oxysepala HOM05D005421 ORTHO05D007601 2.2e-44 182.6 94 89.4
CBR_g27792 Chara braunii HOM05D005421 ORTHO05D007601 2.2e-44 182.6 94 90.4
CDE02G0330 Ceratophyllum demersum HOM05D005421 ORTHO05D007601 1.1e-43 180.3 94 86.2
Sed0018701 Sechium edule HOM05D005421 ORTHO05D007601 1.1e-43 180.3 94 88.3
MBI18_g04564_MAGBIO Magnolia biondii HOM05D005421 ORTHO05D007601 1.4e-43 179.9 94 88.3
HPP92_020212 Vanilla planifolia HOM05D005421 ORTHO05D007601 1.4e-43 179.9 94 87.2
HPP92_020232 Vanilla planifolia HOM05D005421 ORTHO05D007601 1.4e-43 179.9 94 87.2
arahy.Tifrunner.gnm1.ann1.1MC3I0 Arachis hypogaea HOM05D005421 ORTHO05D007601 3.2e-43 178.7 94 87.2
arahy.Tifrunner.gnm1.ann1.MB2RBZ Arachis hypogaea HOM05D005421 ORTHO05D007601 3.2e-43 178.7 94 87.2
CiPaw.07G025400 Carya illinoinensis HOM05D005421 ORTHO05D007601 3.2e-43 178.7 94 87.2
ClCG02G015170 Citrullus lanatus HOM05D005421 ORTHO05D007601 3.2e-43 178.7 94 87.2
MELO3C004206.2 Cucumis melo HOM05D005421 ORTHO05D007601 3.2e-43 178.7 94 87.2
CsaV3_2G006840 Cucumis sativus L. HOM05D005421 ORTHO05D007601 3.2e-43 178.7 94 87.2
Glyma.20G238500 Glycine max HOM05D005421 ORTHO05D007601 3.2e-43 178.7 94 87.2
Lalb_Chr02g0148011 Lupinus albus HOM05D005421 ORTHO05D007601 3.2e-43 178.7 94 87.2
Peaxi162Scf00037g01816 Petunia axillaris HOM05D005421 ORTHO05D007601 3.2e-43 178.7 94 88.3
VMungo0720G1843 Vigna mungo HOM05D005421 ORTHO05D007601 3.2e-43 178.7 94 87.2
Cfa006671 Carpinus fangiana HOM05D005421 ORTHO05D007601 4.1e-43 178.3 94 87.2
Glyma.10G149900 Glycine max HOM05D005421 ORTHO05D007601 4.1e-43 178.3 94 86.2
Lsat_1_v5_gn_7_73220 Lactuca sativa HOM05D005421 ORTHO05D007601 4.1e-43 178.3 94 87.2
Sc16g0008670 Simmondsia chinensis HOM05D005421 ORTHO05D007601 4.1e-43 178.3 94 86.2
vmacro01533 Vaccinium macrocarpon HOM05D005421 ORTHO05D007601 4.1e-43 178.3 94 87.2
Atru.chr2.115 Acer truncatum HOM05D005421 ORTHO05D007601 5.4e-43 177.9 94 87.2
Ah.04g161240 Amaranthus hybridus HOM05D005421 ORTHO05D007601 5.4e-43 177.9 94 86.2
Phvul.007G199400 Phaseolus vulgaris HOM05D005421 ORTHO05D007601 5.4e-43 177.9 94 86.2
Prupe.1G236900 Prunus persica HOM05D005421 ORTHO05D007601 5.4e-43 177.9 94 86.2
Ca_10154_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 7.0e-43 177.6 94 86.2
Ca_29832_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 7.0e-43 177.6 94 86.2
Psat6g151720 Pisum sativum HOM05D005421 ORTHO05D007601 7.0e-43 177.6 94 86.2
GSVIVG01031188001 Vitis vinifera HOM05D005421 ORTHO05D007601 7.0e-43 177.6 94 87.2
CANSAT54G2596 Cannabis sativa HOM05D005421 ORTHO05D007601 9.2e-43 177.2 94 86.2
Nitab4.5_0001971g0070 Nicotiana tabacum HOM05D005421 ORTHO05D007601 9.2e-43 177.2 94 87.2
Nitab4.5_0002612g0040 Nicotiana tabacum HOM05D005421 ORTHO05D007601 9.2e-43 177.2 94 87.2
Rhsim11G0092200 Rhododendron simsii HOM05D005421 ORTHO05D007601 9.2e-43 177.2 94 87.2
Ciclev10001489m.g Citrus clementina HOM05D005421 ORTHO05D007601 1.2e-42 176.8 94 86.2
Lj5g0011296 Lotus japonicus HOM05D005421 ORTHO05D007601 1.2e-42 176.8 94 86.2
MD04G1196900 Malus domestica HOM05D005421 ORTHO05D007601 1.2e-42 176.8 94 85.1
Manes.13G000084 Manihot esculenta HOM05D005421 ORTHO05D007601 1.2e-42 176.8 94 86.2
Potri.013G012000 Populus trichocarpa HOM05D005421 ORTHO05D007601 1.2e-42 176.8 94 86.2
Sabra13G0010600 Salix brachista HOM05D005421 ORTHO05D007601 1.2e-42 176.8 94 86.2
Actinidia35540 Actinidia chinensis HOM05D005421 ORTHO05D007601 2.1e-42 176.0 94 85.1
EL10Ac4g09870 Beta vulgaris HOM05D005421 ORTHO05D007601 2.1e-42 176.0 94 86.2
Haze_04100 Corylus avellana HOM05D005421 ORTHO05D007601 2.1e-42 176.0 94 86.2
QL03p018920 Quercus lobata HOM05D005421 ORTHO05D007601 2.1e-42 176.0 94 86.2
Duzib150G0691 Durio zibethinus HOM05D005421 ORTHO05D007601 2.7e-42 175.6 94 85.1
Gohir.A10G155100 Gossypium hirsutum HOM05D005421 ORTHO05D007601 2.7e-42 175.6 94 85.1
Gohir.D10G110800 Gossypium hirsutum HOM05D005421 ORTHO05D007601 2.7e-42 175.6 94 85.1
Gorai.011G122100 Gossypium raimondii HOM05D005421 ORTHO05D007601 2.7e-42 175.6 94 85.1
MD12G1209800 Malus domestica HOM05D005421 ORTHO05D007601 2.7e-42 175.6 94 84.0
Medtr1g083720 Medicago truncatula HOM05D005421 ORTHO05D007601 2.7e-42 175.6 94 85.1
Hund07118 Selenicereus undatus HOM05D005421 ORTHO05D007601 2.7e-42 175.6 94 87.2
Solyc01g100060.4 Solanum lycopersicum HOM05D005421 ORTHO05D007601 2.7e-42 175.6 94 86.2
Sopen01g043590 Solanum pennellii HOM05D005421 ORTHO05D007601 2.7e-42 175.6 94 86.2
PGSC0003DMG400024728 Solanum tuberosum HOM05D005421 ORTHO05D007601 2.7e-42 175.6 94 86.2
Thecc.06G040900 Theobroma cacao HOM05D005421 ORTHO05D007601 2.7e-42 175.6 94 85.1
AUR62000721 Chenopodium quinoa HOM05D005421 ORTHO05D007601 3.5e-42 175.3 94 85.1
AUR62005243 Chenopodium quinoa HOM05D005421 ORTHO05D007601 3.5e-42 175.3 94 85.1
ECA236G4663 Erigeron canadensis HOM05D005421 ORTHO05D007601 3.5e-42 175.3 94 85.1
Eucgr.H03270 Eucalyptus grandis HOM05D005421 ORTHO05D007601 4.6e-42 174.9 94 84.0
HanXRQChr01g0011821 Helianthus annuus HOM05D005421 ORTHO05D007601 4.6e-42 174.9 94 86.2
SMO361G0640 Selaginella moellendorffii HOM05D005421 ORTHO05D007601 4.6e-42 174.9 94 85.1
TAR636G1951 Trochodendron aralioides HOM05D005421 ORTHO05D007601 4.6e-42 174.9 94 85.1
CSS0007056 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 6.0e-42 174.5 94 85.1
CSS0046729 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 6.0e-42 174.5 94 85.1
Dinv30846 Davidia involucrata HOM05D005421 ORTHO05D007601 6.0e-42 174.5 94 86.2
Lalb_Chr21g0310441 Lupinus albus HOM05D005421 ORTHO05D007601 6.0e-42 174.5 94 84.0
CAN.G1273.26 Capsicum annuum HOM05D005421 ORTHO05D007601 7.8e-42 174.1 94 85.1
PSO170G1114 Papaver somniferum HOM05D005421 ORTHO05D007601 7.8e-42 174.1 94 85.1
PSO407G0035 Papaver somniferum HOM05D005421 ORTHO05D007601 7.8e-42 174.1 94 85.1
FvH4_6g07010 Fragaria vesca HOM05D005421 ORTHO05D007601 1.3e-41 173.3 94 81.9
FAN05G0688 Fragaria x ananassa HOM05D005421 ORTHO05D007601 1.3e-41 173.3 94 81.9
Os09g0103600 Oryza sativa ssp. japonica HOM05D005421 ORTHO05D007601 1.3e-41 173.3 94 83.0
RcHm_v2.0_Chr3g0456541 Rosa chinensis HOM05D005421 ORTHO05D007601 1.3e-41 173.3 94 81.9
TWI56G0052 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 1.3e-41 173.3 94 81.9
Zm00001eb095730 Zea mays HOM05D005421 ORTHO05D007601 1.3e-41 173.3 94 83.0
COL.COLO4_07356 Corchorus olitorius HOM05D005421 ORTHO05D007601 3.0e-41 172.2 94 84.0
FAN02G3486 Fragaria x ananassa HOM05D005421 ORTHO05D007601 3.0e-41 172.2 94 80.9
FAN14G1909 Fragaria x ananassa HOM05D005421 ORTHO05D007601 3.0e-41 172.2 94 80.9
Cc02_g34540 Coffea canephora HOM05D005421 ORTHO05D007601 5.0e-41 171.4 94 83.0
Lj9C202T10 Lonicera japonica HOM05D005421 ORTHO05D007601 5.0e-41 171.4 94 83.0
PGR031G1007 Punica granatum HOM05D005421 ORTHO05D007601 6.6e-41 171.0 94 81.9
Aa31LG3G1470 Aethionema arabicum HOM05D005421 ORTHO05D007601 8.6e-41 170.6 94 81.9
Migut.B01005 Erythranthe guttata HOM05D005421 ORTHO05D007601 8.6e-41 170.6 94 84.0
COL.COLO4_26689 Corchorus olitorius HOM05D005421 ORTHO05D007601 1.1e-40 170.2 94 80.9
THA.LOC104820733 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 1.1e-40 170.2 94 81.9
TWI12G1149 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 1.1e-40 170.2 94 79.8
DCAR_004503 Daucus carota HOM05D005421 ORTHO05D007601 1.5e-40 169.9 94 81.9
SGA_v2.0_scaffold4G01947 Striga asiatica HOM05D005421 ORTHO05D007601 1.5e-40 169.9 94 81.9
Cpa.g.sc48.125 Carica papaya HOM05D005421 ORTHO05D007601 1.9e-40 169.5 94 81.9
THA.LOC104805907 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 1.9e-40 169.5 94 81.9
CARHR135760 Cardamine hirsuta HOM05D005421 ORTHO05D007601 2.5e-40 169.1 94 80.9
Sp4g22980 Schrenkiella parvula HOM05D005421 ORTHO05D007601 2.5e-40 169.1 94 80.9
BcaB01g03524 Brassica carinata HOM05D005421 ORTHO05D007601 3.3e-40 168.7 94 80.9
Nitab4.5_0003248g0020 Nicotiana tabacum HOM05D005421 ORTHO05D007601 7.3e-40 167.5 94 83.0
AL4G38520 Arabidopsis lyrata HOM05D005421 ORTHO05D007601 9.5e-40 167.2 94 79.8
AT2G40650 Arabidopsis thaliana HOM05D005421 ORTHO05D007601 9.5e-40 167.2 94 79.8
Carub.0004s2294 Capsella rubella HOM05D005421 ORTHO05D007601 9.5e-40 167.2 94 79.8
BcaC01g05387 Brassica carinata HOM05D005421 ORTHO05D007601 1.2e-39 166.8 94 79.8
A03p22860 Brassica napus HOM05D005421 ORTHO05D007601 1.2e-39 166.8 94 79.8
C03p27110 Brassica napus HOM05D005421 ORTHO05D007601 1.2e-39 166.8 94 79.8
BolC3t15092H Brassica oleracea HOM05D005421 ORTHO05D007601 1.2e-39 166.8 94 79.8
BraA03t11510Z Brassica rapa HOM05D005421 ORTHO05D007601 1.2e-39 166.8 94 79.8
SalBow1G5723 Salvia bowleyana HOM05D005421 ORTHO05D007601 1.6e-39 166.4 94 81.9
BcaC02g07328 Brassica carinata HOM05D005421 ORTHO05D007601 8.1e-39 164.1 94 78.7
C04p68470 Brassica napus HOM05D005421 ORTHO05D007601 8.1e-39 164.1 94 78.7
BolC4t28347H Brassica oleracea HOM05D005421 ORTHO05D007601 8.1e-39 164.1 94 78.7
A04p31080 Brassica napus HOM05D005421 ORTHO05D007601 2.3e-38 162.5 94 77.7
BraA04t18563Z Brassica rapa HOM05D005421 ORTHO05D007601 2.3e-38 162.5 94 77.7
Oeu045895.1 Olea europaea HOM05D005421 ORTHO05D007601 2.6e-37 159.1 94 78.7
BcaB06g29166 Brassica carinata HOM05D005421 ORTHO05D007601 2.2e-36 156.0 94 75.5
Cre12.g503400 Chlamydomonas reinhardtii HOM05D005421 ORTHO05D007601 3.6e-31 138.7 94 63.8
TWI38G1969 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 3.6e-31 138.7 94 64.9
Peaxi162Scf00404g00814 Petunia axillaris HOM05D005421 ORTHO05D007601 1.4e-30 136.7 97 68.0
Dinv24409 Davidia involucrata HOM05D005421 ORTHO05D007601 2.4e-27 125.9 62 93.5
Haze_27467 Corylus avellana HOM05D005421 ORTHO05D007601 3.2e-27 125.6 89 58.4
FAN09G4258 Fragaria x ananassa HOM05D000389 ORTHO05D000287 9.2e-27 124.0 62 90.3
MCO01G394 Micromonas commoda HOM05D005421 ORTHO05D007601 3.5e-26 122.1 93 59.1
Nn4g25707 Nelumbo nucifera HOM05D005421 ORTHO05D007601 1.8e-22 109.8 94 62.8
PRCOL_00004539 Prasinoderma coloniale HOM05D005421 ORTHO05D007601 3.8e-20 102.1 96 49.0
Potri.005G021600 Populus trichocarpa HOM05D005421 ORTHO05D007601 1.7e-12 76.6 41 82.9
RcHm_v2.0_Chr7g0209371 Rosa chinensis HOM05D005421 ORTHO05D007601 1.7e-12 76.6 53 60.4


User provided reference genes

Program Settings