Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_13753 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 5.5e-189 664.1 322 100.0
QL02p076349 Quercus lobata HOM05D001104 ORTHO05D006624 1.2e-42 177.9 150 54.0
Medtr6g007040 Medicago truncatula HOM05D001104 ORTHO05D006624 2.7e-42 176.8 154 52.6
TAR374G1405 Trochodendron aralioides HOM05D001104 ORTHO05D006624 4.6e-42 176.0 157 52.9
Thecc.04G010000 Theobroma cacao HOM05D001104 ORTHO05D006624 1.0e-41 174.9 147 55.1
CSS0024274 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 1.7e-41 174.1 150 54.7
TWI12G0063 Tripterygium wilfordii HOM05D001104 ORTHO05D006624 2.3e-41 173.7 147 55.1
Sed0005946 Sechium edule HOM05D001104 ORTHO05D006624 3.0e-41 173.3 147 54.4
Atru.chr6.2305 Acer truncatum HOM05D001104 ORTHO05D006624 3.9e-41 172.9 147 55.1
TPR.G2265 Trifolium pratense HOM05D001104 ORTHO05D006624 5.1e-41 172.6 149 53.7
Cpa.g.sc215.8 Carica papaya HOM05D001104 ORTHO05D006624 6.6e-41 172.2 147 54.4
CSS0039746 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 1.1e-40 171.4 149 54.4
Gohir.A07G220700 Gossypium hirsutum HOM05D001104 ORTHO05D006624 1.5e-40 171.0 147 55.8
Gorai.001G262300 Gossypium raimondii HOM05D001104 ORTHO05D006624 1.5e-40 171.0 147 55.8
Nn4g22776 Nelumbo nucifera HOM05D001104 ORTHO05D006624 1.9e-40 170.6 162 50.0
Potri.001G348700 Populus trichocarpa HOM05D001104 ORTHO05D006624 1.9e-40 170.6 186 46.8
MELO3C021546.2 Cucumis melo HOM05D001104 ORTHO05D006624 3.3e-40 169.9 147 53.7
Duzib147G0036 Durio zibethinus HOM05D001104 ORTHO05D006624 3.3e-40 169.9 147 53.7
ECA238G2799 Erigeron canadensis HOM05D001104 ORTHO05D006624 3.3e-40 169.9 153 52.3
Prupe.3G285400 Prunus persica HOM05D001104 ORTHO05D006624 4.3e-40 169.5 192 44.8
Dinv33487 Davidia involucrata HOM05D001104 ORTHO05D006624 7.3e-40 168.7 159 50.9
Cc07_g02180 Coffea canephora HOM05D001104 ORTHO05D006624 9.6e-40 168.3 149 54.4
CsaV3_5G027380 Cucumis sativus L. HOM05D001104 ORTHO05D006624 9.6e-40 168.3 147 53.1
Hma1.2p1_0993F.1_g245480 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 9.6e-40 168.3 149 53.0
BcaC06g30950 Brassica carinata HOM05D001104 ORTHO05D006624 1.2e-39 167.9 154 51.3
Haze_14675 Corylus avellana HOM05D001104 ORTHO05D006624 1.2e-39 167.9 147 54.4
Lj7C592G4 Lonicera japonica HOM05D001104 ORTHO05D006624 1.2e-39 167.9 149 55.0
MD17G1034200 Malus domestica HOM05D001104 ORTHO05D006624 1.2e-39 167.9 192 44.3
THA.LOC104825337 Tarenaya hassleriana HOM05D001104 ORTHO05D006624 1.2e-39 167.9 154 50.6
CDE06G1183 Ceratophyllum demersum HOM05D001104 ORTHO05D006624 1.6e-39 167.5 147 51.7
MSTRG.15512 Avicennia marina HOM05D001104 ORTHO05D006624 2.1e-39 167.2 149 52.3
CAN.G973.9 Capsicum annuum HOM05D001104 ORTHO05D006624 2.1e-39 167.2 149 54.4
Aqoxy3G01030 Aquilegia oxysepala HOM05D001104 ORTHO05D006624 2.8e-39 166.8 137 55.5
Ciclev10015353m.g Citrus clementina HOM05D001104 ORTHO05D006624 2.8e-39 166.8 147 51.7
CiPaw.03G038600 Carya illinoinensis HOM05D001104 ORTHO05D006624 3.6e-39 166.4 147 53.7
BraA06t26998Z Brassica rapa HOM05D001104 ORTHO05D006624 6.2e-39 165.6 154 50.6
Solyc02g067740.4 Solanum lycopersicum HOM05D001104 ORTHO05D006624 6.2e-39 165.6 153 52.3
SalBow1G5303 Salvia bowleyana HOM05D001104 ORTHO05D006624 8.1e-39 165.2 152 52.0
Sopen02g016860 Solanum pennellii HOM05D001104 ORTHO05D006624 8.1e-39 165.2 153 52.3
GSVIVG01032469001 Vitis vinifera HOM05D001104 ORTHO05D006624 8.1e-39 165.2 187 44.9
A06p40770 Brassica napus HOM05D001104 ORTHO05D006624 1.1e-38 164.9 154 50.6
Rhsim10G0021500 Rhododendron simsii HOM05D001104 ORTHO05D006624 1.1e-38 164.9 149 52.3
BcaC06g33770 Brassica carinata HOM05D001104 ORTHO05D006624 1.4e-38 164.5 154 50.0
C07p37130 Brassica napus HOM05D001104 ORTHO05D006624 1.4e-38 164.5 154 50.0
BolC7t44224H Brassica oleracea HOM05D001104 ORTHO05D006624 1.4e-38 164.5 154 50.0
Oeu062922.1 Olea europaea HOM05D001104 ORTHO05D006624 1.4e-38 164.5 149 53.0
PGSC0003DMG400006955 Solanum tuberosum HOM05D001104 ORTHO05D006624 1.4e-38 164.5 153 52.3
Cfa007422 Carpinus fangiana HOM05D001104 ORTHO05D006624 1.8e-38 164.1 147 53.1
VMungo0464G0407 Vigna mungo HOM05D001104 ORTHO05D006624 2.4e-38 163.7 139 52.5
Dinv35069 Davidia involucrata HOM05D001104 ORTHO05D006624 3.1e-38 163.3 149 51.0
ClCG09G018970 Citrullus lanatus HOM05D001104 ORTHO05D006624 4.0e-38 162.9 140 54.3
Nitab4.5_0001709g0040 Nicotiana tabacum HOM05D001104 ORTHO05D006624 5.2e-38 162.5 153 51.0
PGR142G0881 Punica granatum HOM05D001104 ORTHO05D006624 5.2e-38 162.5 179 45.3
Sc03g0007930 Simmondsia chinensis HOM05D001104 ORTHO05D006624 5.2e-38 162.5 147 51.0
ATR0730G148 Amborella trichopoda HOM05D001104 ORTHO05D006624 6.9e-38 162.2 186 44.6
Thhalv10004293m.g Eutrema salsugineum HOM05D001104 ORTHO05D006624 6.9e-38 162.2 154 49.4
vmacro05831 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 6.9e-38 162.2 155 50.3
vmacro18250 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 1.2e-37 161.4 144 52.1
HanXRQChr14g0450311 Helianthus annuus HOM05D001104 ORTHO05D006624 1.5e-37 161.0 144 52.1
AL5G17430 Arabidopsis lyrata HOM05D001104 ORTHO05D006624 2.0e-37 160.6 155 49.7
Glyma.19G007900 Glycine max HOM05D001104 ORTHO05D006624 2.6e-37 160.2 150 50.0
EL10Ac4g08579 Beta vulgaris HOM05D001104 ORTHO05D006624 3.4e-37 159.8 147 51.0
Migut.H00115 Erythranthe guttata HOM05D001104 ORTHO05D006624 3.4e-37 159.8 150 51.3
RcHm_v2.0_Chr2g0171701 Rosa chinensis HOM05D001104 ORTHO05D006624 3.4e-37 159.8 147 51.0
SGA_v2.0_scaffold135G34875 Striga asiatica HOM05D001104 ORTHO05D006624 3.4e-37 159.8 150 50.7
FvH4_6g50760 Fragaria vesca HOM05D001104 ORTHO05D006624 4.4e-37 159.5 139 51.8
Sp2g16980 Schrenkiella parvula HOM05D001104 ORTHO05D006624 4.4e-37 159.5 146 50.7
CANSAT64G0855 Cannabis sativa HOM05D001104 ORTHO05D006624 7.6e-37 158.7 147 51.0
FAN02G3192 Fragaria x ananassa HOM05D001104 ORTHO05D006624 7.6e-37 158.7 148 49.3
FAN05G2035 Fragaria x ananassa HOM05D001104 ORTHO05D006624 7.6e-37 158.7 148 49.3
Phvul.004G013700 Phaseolus vulgaris HOM05D001104 ORTHO05D006624 7.6e-37 158.7 140 51.4
FAN14G0697 Fragaria x ananassa HOM05D001104 ORTHO05D006624 9.9e-37 158.3 139 51.8
Actinidia35743 Actinidia chinensis HOM05D001104 ORTHO05D006624 1.3e-36 157.9 148 49.3
arahy.Tifrunner.gnm1.ann1.S5BZSG Arachis hypogaea HOM05D001104 ORTHO05D006624 2.2e-36 157.1 147 48.3
COL.COLO4_28978 Corchorus olitorius HOM05D001104 ORTHO05D006624 2.9e-36 156.8 154 49.4
DCAR_015045 Daucus carota HOM05D001104 ORTHO05D006624 2.9e-36 156.8 152 48.7
PSO478G3469 Papaver somniferum HOM05D001104 ORTHO05D006624 3.8e-36 156.4 155 45.8
Carub.0005s0650 Capsella rubella HOM05D001104 ORTHO05D006624 6.4e-36 155.6 154 48.1
Actinidia06020 Actinidia chinensis HOM05D001104 ORTHO05D006624 8.4e-36 155.2 149 49.7
arahy.Tifrunner.gnm1.ann1.PA6DSG Arachis hypogaea HOM05D001104 ORTHO05D006624 8.4e-36 155.2 147 47.6
Eucgr.I01793 Eucalyptus grandis HOM05D001104 ORTHO05D006624 8.4e-36 155.2 152 49.3
Lsat_1_v5_gn_4_182480 Lactuca sativa HOM05D001104 ORTHO05D006624 1.9e-35 154.1 140 52.1
CARHR149500 Cardamine hirsuta HOM05D001104 ORTHO05D006624 3.2e-35 153.3 168 46.4
AT3G27930 Arabidopsis thaliana HOM05D001104 ORTHO05D006624 9.3e-35 151.8 146 48.6
PSO017G6424 Papaver somniferum HOM05D001104 ORTHO05D006624 9.3e-35 151.8 187 40.6
ECA232G2826 Erigeron canadensis HOM05D001104 ORTHO05D006624 2.7e-34 150.2 137 51.1
HPP92_024321 Vanilla planifolia HOM05D001104 ORTHO05D006285 8.7e-33 145.2 135 50.4
Os05g0577800 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 1.5e-32 144.4 153 45.1
HanXRQChr09g0266171 Helianthus annuus HOM05D001104 ORTHO05D006624 4.3e-32 142.9 143 49.7
Ca_04192_v3 Cicer arietinum L. HOM05D001104 ORTHO05D006624 9.6e-32 141.7 139 49.6
Lalb_Chr06g0176011 Lupinus albus HOM05D001104 ORTHO05D006624 6.2e-31 139.0 131 47.3
MD09G1032600 Malus domestica HOM05D001104 ORTHO05D006624 1.4e-30 137.9 125 52.0
Pp3c25_9610 Physcomitrium patens HOM05D001104 ORTHO05D006624 4.0e-30 136.3 143 45.5
Nitab4.5_0001125g0070 Nicotiana tabacum HOM05D001104 ORTHO05D006624 6.9e-30 135.6 149 47.7
AagrBONN_evm.TU.Sc2ySwM_340.221 Anthoceros agrestis HOM05D001104 ORTHO05D006624 1.5e-29 134.4 148 46.6
unitig_899.g15491 Utricularia gibba HOM05D000928 ORTHO05D001186 7.6e-29 132.1 128 51.6
Lj2g0012499 Lotus japonicus HOM05D001104 ORTHO05D006624 1.3e-28 131.3 148 43.2
BcaC03g17495 Brassica carinata HOM05D001104 ORTHO05D006624 2.9e-28 130.2 169 42.6
Hma1.2p1_3249F.1_g334430 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 4.9e-28 129.4 118 49.2
DCAR_011201 Daucus carota HOM05D001104 ORTHO05D006624 6.4e-28 129.0 121 48.8
Gohir.D07G227400 Gossypium hirsutum HOM05D001104 ORTHO05D006624 1.1e-27 128.3 117 51.3
Aa31LG2G4840 Aethionema arabicum HOM05D001104 ORTHO05D006285 5.4e-27 125.9 135 43.7
MBI16_g05636_MAGBIO Magnolia biondii HOM05D001104 ORTHO05D006624 5.4e-27 125.9 117 47.9
CSS0016338 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 9.3e-27 125.2 152 44.1
CSS0012459 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 1.0e-25 121.7 150 43.3
C02p54520 Brassica napus HOM05D001104 ORTHO05D006624 1.8e-25 120.9 170 40.0
Peaxi162Scf00933g00005 Petunia axillaris HOM05D001104 ORTHO05D006624 2.3e-25 120.6 118 47.5
AUR62043218 Chenopodium quinoa HOM05D001104 ORTHO05D006624 3.9e-25 119.8 128 46.9
C02p54570 Brassica napus HOM05D001104 ORTHO05D006624 5.1e-25 119.4 170 40.6
Rhsim08G0054100 Rhododendron simsii HOM05D001104 ORTHO05D006285 1.5e-24 117.9 119 49.6
BolC2t11520H Brassica oleracea HOM05D001104 ORTHO05D006624 4.3e-24 116.3 168 40.5
Os05g0577900 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 1.4e-22 111.3 138 42.8
Cfa008567 Carpinus fangiana HOM05D001104 ORTHO05D006624 2.4e-22 110.5 147 42.2
BolC2t11515H Brassica oleracea HOM05D001104 ORTHO05D006624 4.5e-21 106.3 109 49.5
A02p35680 Brassica napus HOM05D001104 ORTHO05D006624 9.9e-21 105.1 93 54.8
BraA02t08571Z Brassica rapa HOM05D001104 ORTHO05D006624 9.9e-21 105.1 93 54.8
SEGI_37400 Sequoiadendron giganteum HOM05D009358 ORTHO05D015187 1.9e-19 100.9 73 69.9
SEGI_02570 Sequoiadendron giganteum HOM05D000003 ORTHO05D000004 1.0e-17 95.1 65 72.3
SEGI_34244 Sequoiadendron giganteum HOM05D000003 ORTHO05D000006 1.3e-15 88.2 59 74.6
SEGI_09404 Sequoiadendron giganteum HOM05D001113 ORTHO05D000968 1.6e-15 87.8 49 87.8
BcaB07g30139 Brassica carinata HOM05D001104 ORTHO05D006624 1.5e-13 81.3 53 67.9
SEGI_27514 Sequoiadendron giganteum HOM05D000104 ORTHO05D003467 2.2e-12 77.4 131 43.5
Oeu043054.1 Olea europaea HOM05D001104 ORTHO05D006285 1.9e-11 74.3 100 38.0
SEGI_03573 Sequoiadendron giganteum HOM05D000399 ORTHO05D000304 2.1e-10 70.9 44 79.5
SEGI_20451 Sequoiadendron giganteum HOM05D001193 ORTHO05D001016 1.3e-09 68.2 67 53.7
SEGI_00290 Sequoiadendron giganteum HOM05D020779 ORTHO05D007090 2.3e-09 67.4 51 64.7
SEGI_24311 Sequoiadendron giganteum HOM05D008474 ORTHO05D010618 8.7e-09 65.5 34 85.3
Manes.17G117000 Manihot esculenta HOM05D001104 ORTHO05D006624 1.5e-08 64.7 149 30.9
SEGI_00323 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 1.5e-08 64.7 33 90.9
SEGI_00724 Sequoiadendron giganteum HOM05D020779 ORTHO05D007090 1.5e-08 64.7 33 90.9
SEGI_20574 Sequoiadendron giganteum HOM05D005757 ORTHO05D007090 1.5e-08 64.7 33 90.9
SEGI_23939 Sequoiadendron giganteum HOM05D000372 ORTHO05D002769 3.3e-08 63.5 40 72.5
SEGI_02138 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 4.3e-08 63.2 33 87.9
HanXRQChr06g0175561 Helianthus annuus HOM05D001104 ORTHO05D006624 2.1e-07 60.8 73 41.1
SEGI_08656 Sequoiadendron giganteum HOM05D003938 ORTHO05D004759 2.8e-07 60.5 33 81.8


User provided reference genes

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