Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_13478 Sequoiadendron giganteum HOM05D002724 ORTHO05D002995 3.8e-73 278.1 141 100.0
SEGI_12329 Sequoiadendron giganteum HOM05D002724 ORTHO05D002995 3.2e-56 221.9 187 66.8
TAR627G0194 Trochodendron aralioides HOM05D002724 ORTHO05D002995 9.3e-32 140.6 134 61.2
Nn1g04091 Nelumbo nucifera HOM05D002724 ORTHO05D002995 4.6e-31 138.3 148 58.8
TAR629G0183 Trochodendron aralioides HOM05D002724 ORTHO05D002995 3.0e-30 135.6 144 54.9
HanXRQChr15g0494651 Helianthus annuus HOM05D002724 ORTHO05D002995 3.9e-30 135.2 127 58.3
CDE08G0699 Ceratophyllum demersum HOM05D002724 ORTHO05D002995 6.7e-30 134.4 126 57.1
GSVIVG01014341001 Vitis vinifera HOM05D002724 ORTHO05D002995 1.1e-29 133.7 138 56.5
Prupe.4G047600 Prunus persica HOM05D002724 ORTHO05D002995 3.3e-29 132.1 144 53.5
CSS0027753 Camellia sinensis var. sinensis HOM05D002724 ORTHO05D002995 1.6e-28 129.8 144 52.1
MD05G1312500 Malus domestica HOM05D002724 ORTHO05D002995 1.6e-28 129.8 140 53.6
Lsat_1_v5_gn_7_105121 Lactuca sativa HOM05D002724 ORTHO05D002995 2.2e-28 129.4 127 57.5
PGR004G1438 Punica granatum HOM05D002724 ORTHO05D002995 6.3e-28 127.9 126 57.1
Cpa.g.sc27.27 Carica papaya HOM05D002724 ORTHO05D002995 1.1e-27 127.1 159 51.6
ECA236G0664 Erigeron canadensis HOM05D002724 ORTHO05D002995 1.1e-27 127.1 138 50.7
Nn1g06542 Nelumbo nucifera HOM05D002724 ORTHO05D002995 1.8e-27 126.3 145 52.4
Eucgr.E03294 Eucalyptus grandis HOM05D002724 ORTHO05D002995 2.4e-27 125.9 137 52.6
Potri.004G043900 Populus trichocarpa HOM05D002724 ORTHO05D002995 2.4e-27 125.9 129 55.0
CARHR252620 Cardamine hirsuta HOM05D002724 ORTHO05D002995 3.1e-27 125.6 126 57.1
MELO3C025549.2 Cucumis melo HOM05D002724 ORTHO05D002995 3.1e-27 125.6 135 53.3
Thhalv10028462m.g Eutrema salsugineum HOM05D002724 ORTHO05D002995 3.1e-27 125.6 126 57.1
Manes.16G027900 Manihot esculenta HOM05D002724 ORTHO05D002995 3.1e-27 125.6 131 55.0
Potri.011G052800 Populus trichocarpa HOM05D002724 ORTHO05D002995 3.1e-27 125.6 131 55.0
Sp6g04050 Schrenkiella parvula HOM05D002724 ORTHO05D002995 3.1e-27 125.6 126 57.1
SpUn0051_0030 Schrenkiella parvula HOM05D002724 ORTHO05D002995 3.1e-27 125.6 126 57.1
Lj8A156G76 Lonicera japonica HOM05D002724 ORTHO05D002995 4.1e-27 125.2 122 58.2
AT4G04910 Arabidopsis thaliana HOM05D002724 ORTHO05D002995 5.3e-27 124.8 126 57.1
A03p30230 Brassica napus HOM05D002724 ORTHO05D002995 5.3e-27 124.8 126 57.1
Carub.0006s3283 Capsella rubella HOM05D002724 ORTHO05D002995 5.3e-27 124.8 126 57.1
MD10G1294300 Malus domestica HOM05D002724 ORTHO05D002995 5.3e-27 124.8 140 52.1
AL6G48420 Arabidopsis lyrata HOM05D002724 ORTHO05D002995 6.9e-27 124.4 126 57.1
CSS0016915 Camellia sinensis var. sinensis HOM05D002724 ORTHO05D002995 6.9e-27 124.4 131 54.2
Hma1.2p1_0885F.1_g232610 Hydrangea macrophylla HOM05D002724 ORTHO05D002995 6.9e-27 124.4 144 51.4
THA.LOC104806293 Tarenaya hassleriana HOM05D002724 ORTHO05D002995 6.9e-27 124.4 133 54.9
THA.LOC104812936 Tarenaya hassleriana HOM05D002724 ORTHO05D002995 6.9e-27 124.4 133 53.4
BraA03t12207Z Brassica rapa HOM05D002724 ORTHO05D002995 9.1e-27 124.0 122 58.2
Rhsim04G0021300 Rhododendron simsii HOM05D002724 ORTHO05D002995 9.1e-27 124.0 118 58.5
C03p36480 Brassica napus HOM05D002724 ORTHO05D002995 1.5e-26 123.2 126 56.3
Cfa000464 Carpinus fangiana HOM05D002724 ORTHO05D002995 1.5e-26 123.2 132 54.5
PSO832G3329 Papaver somniferum HOM05D002724 ORTHO05D002995 1.5e-26 123.2 144 52.8
Rhsim06G0198500 Rhododendron simsii HOM05D002724 ORTHO05D002995 1.5e-26 123.2 165 45.5
Thecc.06G187300 Theobroma cacao HOM05D002724 ORTHO05D002995 1.5e-26 123.2 129 55.0
C09p32960 Brassica napus HOM05D002724 ORTHO05D002995 2.0e-26 122.9 121 56.2
Peaxi162Scf00027g00235 Petunia axillaris HOM05D002724 ORTHO05D002995 2.0e-26 122.9 123 55.3
SMO122G0002 Selaginella moellendorffii HOM05D002724 ORTHO05D002995 2.0e-26 122.9 124 52.4
Sc03g0009950 Simmondsia chinensis HOM05D002724 ORTHO05D002995 2.0e-26 122.9 132 56.8
CsaV3_1G017090 Cucumis sativus L. HOM05D002724 ORTHO05D002995 2.6e-26 122.5 135 51.9
PSO210G5715 Papaver somniferum HOM05D002724 ORTHO05D002995 2.6e-26 122.5 144 52.8
AagrBONN_evm.TU.Sc2ySwM_117.1625 Anthoceros agrestis HOM05D002724 ORTHO05D002995 3.4e-26 122.1 155 47.7
Manes.17G045800 Manihot esculenta HOM05D002724 ORTHO05D002995 3.4e-26 122.1 129 53.5
Ciclev10011146m.g Citrus clementina HOM05D002724 ORTHO05D002995 4.5e-26 121.7 137 51.1
Migut.H01936 Erythranthe guttata HOM05D002724 ORTHO05D002995 4.5e-26 121.7 135 51.1
RcHm_v2.0_Chr5g0008441 Rosa chinensis HOM05D002724 ORTHO05D002995 4.5e-26 121.7 124 54.8
A09p26000 Brassica napus HOM05D002724 ORTHO05D002995 5.9e-26 121.3 124 56.5
QL05p060587 Quercus lobata HOM05D002724 ORTHO05D002995 5.9e-26 121.3 150 50.0
Sed0008019 Sechium edule HOM05D002724 ORTHO05D002995 5.9e-26 121.3 126 54.8
CiPaw.13G137300 Carya illinoinensis HOM05D002724 ORTHO05D002995 1.0e-25 120.6 129 55.0
FvH4_3g09180 Fragaria vesca HOM05D002724 ORTHO05D002995 1.3e-25 120.2 130 53.1
FAN16G0141 Fragaria x ananassa HOM05D002724 ORTHO05D002995 1.3e-25 120.2 130 53.1
BolC3t15961H Brassica oleracea HOM05D002724 ORTHO05D002995 1.7e-25 119.8 126 56.3
Glyma.07G195900 Glycine max HOM05D002724 ORTHO05D002995 1.7e-25 119.8 136 52.2
AL7G50070 Arabidopsis lyrata HOM05D002724 ORTHO05D002995 2.9e-25 119.0 117 59.0
arahy.Tifrunner.gnm1.ann1.9ZT65R Arachis hypogaea HOM05D002724 ORTHO05D002995 3.8e-25 118.6 125 55.2
arahy.Tifrunner.gnm1.ann1.JB3DWX Arachis hypogaea HOM05D002724 ORTHO05D002995 3.8e-25 118.6 125 55.2
Mapoly0104s0033 Marchantia polymorpha HOM05D002724 ORTHO05D002995 3.8e-25 118.6 144 50.0
CsaV3_UNG045320 Cucumis sativus L. HOM05D002724 ORTHO05D002995 1.1e-24 117.1 133 51.1
Duzib160G0569 Durio zibethinus HOM05D002724 ORTHO05D002995 1.1e-24 117.1 136 50.0
Atru.chr12.2148 Acer truncatum HOM05D002724 ORTHO05D002995 1.4e-24 116.7 134 51.5
BcaC04g21344 Brassica carinata HOM05D002724 ORTHO05D002995 1.4e-24 116.7 115 57.4
Gohir.D06G131800 Gossypium hirsutum HOM05D002724 ORTHO05D002995 1.4e-24 116.7 136 51.5
Sp7g19890 Schrenkiella parvula HOM05D002724 ORTHO05D002995 1.4e-24 116.7 123 52.8
Sc16g0006970 Simmondsia chinensis HOM05D002724 ORTHO05D002995 1.4e-24 116.7 120 58.3
QL05p060484 Quercus lobata HOM05D002724 ORTHO05D002995 1.9e-24 116.3 150 48.0
Aa31LG9G9580 Aethionema arabicum HOM05D002724 ORTHO05D002995 2.5e-24 115.9 150 47.3
BcaC09g50311 Brassica carinata HOM05D002724 ORTHO05D002995 2.5e-24 115.9 126 51.6
BraA09t38166Z Brassica rapa HOM05D002724 ORTHO05D002995 3.2e-24 115.5 138 50.0
CANSAT35G0352 Cannabis sativa HOM05D002724 ORTHO05D002995 3.2e-24 115.5 144 49.3
Glyma.13G180100 Glycine max HOM05D002724 ORTHO05D002995 4.2e-24 115.2 136 50.0
Gohir.A06G126900 Gossypium hirsutum HOM05D002724 ORTHO05D002995 4.2e-24 115.2 136 50.0
Gorai.010G153600 Gossypium raimondii HOM05D002724 ORTHO05D002995 4.2e-24 115.2 129 52.7
Gohir.A06G210200 Gossypium hirsutum HOM05D002724 ORTHO05D002995 9.4e-24 114.0 136 51.5
BolC9t56131H Brassica oleracea HOM05D002724 ORTHO05D002995 2.1e-23 112.8 138 48.6
FvH4_4g01371 Fragaria vesca HOM05D002724 ORTHO05D002995 2.7e-23 112.5 131 51.1
Gohir.D06G210800 Gossypium hirsutum HOM05D002724 ORTHO05D002995 3.6e-23 112.1 129 52.7
Gorai.010G255500 Gossypium raimondii HOM05D002724 ORTHO05D002995 3.6e-23 112.1 129 52.7
Oeu019329.2 Olea europaea HOM05D002724 ORTHO05D002995 3.6e-23 112.1 141 48.2
PGSC0003DMG401029739 Solanum tuberosum HOM05D002724 ORTHO05D002995 3.6e-23 112.1 125 50.4
Haze_06453 Corylus avellana HOM05D002724 ORTHO05D002995 4.6e-23 111.7 123 50.4
VMungo0251G0637 Vigna mungo HOM05D002724 ORTHO05D002995 4.6e-23 111.7 120 52.5
Duzib192G0701 Durio zibethinus HOM05D002724 ORTHO05D002995 6.1e-23 111.3 133 49.6
Lj4g0025106 Lotus japonicus HOM05D002724 ORTHO05D002995 6.1e-23 111.3 137 49.6
AL7G31640 Arabidopsis lyrata HOM05D002724 ORTHO05D002995 7.9e-23 110.9 126 50.0
Eucgr.E03298 Eucalyptus grandis HOM05D002724 ORTHO05D002995 7.9e-23 110.9 140 49.3
FAN13G1355 Fragaria x ananassa HOM05D002724 ORTHO05D002995 2.3e-22 109.4 130 50.0
Actinidia09684 Actinidia chinensis HOM05D002724 ORTHO05D002995 3.9e-22 108.6 118 51.7
AL7G32210 Arabidopsis lyrata HOM05D002724 ORTHO05D002995 3.9e-22 108.6 127 52.0
Ca_18540_v3 Cicer arietinum L. HOM05D002724 ORTHO05D002995 3.9e-22 108.6 119 51.3
Mapoly0104s0034 Marchantia polymorpha HOM05D002724 ORTHO05D002995 3.9e-22 108.6 132 48.5
Phvul.002G228500 Phaseolus vulgaris HOM05D002724 ORTHO05D002995 3.9e-22 108.6 143 46.2
FvH4_4g01320 Fragaria vesca HOM05D002724 ORTHO05D002995 5.1e-22 108.2 131 48.9
BraA01t02048Z Brassica rapa HOM05D002724 ORTHO05D002995 6.7e-22 107.8 134 48.5
Oeu011340.2 Olea europaea HOM05D002724 ORTHO05D002995 6.7e-22 107.8 142 46.5
Os05g0519400 Oryza sativa ssp. japonica HOM05D002724 ORTHO05D002995 6.7e-22 107.8 130 49.2
Psat7g113520 Pisum sativum HOM05D002724 ORTHO05D002995 6.7e-22 107.8 137 48.9
BolC1t02617H Brassica oleracea HOM05D002724 ORTHO05D002995 8.8e-22 107.5 121 51.2
TWI38G0591 Tripterygium wilfordii HOM05D002724 ORTHO05D002995 1.1e-21 107.1 136 48.5
FAN25G1567 Fragaria x ananassa HOM05D002724 ORTHO05D002995 1.5e-21 106.7 157 43.9
Lalb_Chr09g0327631 Lupinus albus HOM05D002724 ORTHO05D002995 2.0e-21 106.3 131 48.9
Medtr4g088885 Medicago truncatula HOM05D002724 ORTHO05D002995 2.0e-21 106.3 136 50.0
Hund02192 Selenicereus undatus HOM05D002724 ORTHO05D002995 4.4e-21 105.1 127 48.0
EL10Ac4g08172 Beta vulgaris HOM05D002724 ORTHO05D002995 5.7e-21 104.8 126 47.6
Sabra11G0036700 Salix brachista HOM05D002724 ORTHO05D002995 7.4e-21 104.4 151 46.4
Zm00001eb293810 Zea mays HOM05D002724 ORTHO05D002995 7.4e-21 104.4 138 46.4
A01p21430 Brassica napus HOM05D002724 ORTHO05D002995 1.3e-20 103.6 145 44.8
CANSAT11G0259 Cannabis sativa HOM05D002724 ORTHO05D002995 1.3e-20 103.6 137 46.7
Aqoxy4G00812 Aquilegia oxysepala HOM05D002724 ORTHO05D002995 1.7e-20 103.2 141 43.3
Aqoxy7G02579 Aquilegia oxysepala HOM05D002724 ORTHO05D002995 2.8e-20 102.4 149 43.6
BcaNung00220 Brassica carinata HOM05D002724 ORTHO05D002995 2.8e-20 102.4 127 48.8
C01p26760 Brassica napus HOM05D002724 ORTHO05D002995 2.8e-20 102.4 150 43.3
Lj1A843G46 Lonicera japonica HOM05D002724 ORTHO05D002995 3.7e-20 102.1 117 52.1
Zm00001eb185960 Zea mays HOM05D002724 ORTHO05D002995 6.3e-20 101.3 135 47.4
AUR62004451 Chenopodium quinoa HOM05D002724 ORTHO05D002995 1.8e-19 99.8 136 41.9
vmacro11862 Vaccinium macrocarpon HOM05D002724 ORTHO05D002995 5.3e-19 98.2 187 36.4
Ah.06g184140 Amaranthus hybridus HOM05D002724 ORTHO05D002995 6.9e-19 97.8 126 47.6
Nitab4.5_0000207g0120 Nicotiana tabacum HOM05D002724 ORTHO05D002995 3.4e-18 95.5 123 45.5
SMO351G0294 Selaginella moellendorffii HOM05D002724 ORTHO05D002995 5.9e-18 94.7 72 63.9
DCAR_013103 Daucus carota HOM05D002724 ORTHO05D002995 7.7e-18 94.4 144 40.3
ATR0737G106 Amborella trichopoda HOM05D002724 ORTHO05D002995 1.7e-17 93.2 130 46.9
BcaB05g23705 Brassica carinata HOM05D002724 ORTHO05D002995 2.9e-17 92.4 72 66.7
Pp3c2_19730 Physcomitrium patens HOM05D002724 ORTHO05D002995 2.9e-17 92.4 126 39.7
BcaC09g51501 Brassica carinata HOM05D002724 ORTHO05D002995 1.9e-16 89.7 72 63.9
CARHR228460 Cardamine hirsuta HOM05D002724 ORTHO05D002995 2.5e-16 89.4 72 65.3
Sopen01g047460 Solanum pennellii HOM05D002724 ORTHO05D002995 3.2e-16 89.0 116 46.6
FAN14G5819 Fragaria x ananassa HOM05D002724 ORTHO05D002995 4.2e-16 88.6 126 42.9
Actinidia12809 Actinidia chinensis HOM05D002724 ORTHO05D002995 5.5e-16 88.2 75 60.0
SGA_v2.0_scaffold158G37495 Striga asiatica HOM05D002724 ORTHO05D002995 5.5e-16 88.2 133 43.6
FvH4_6g18030 Fragaria vesca HOM05D002724 ORTHO05D002995 9.4e-16 87.4 126 42.9
Sp1g30090 Schrenkiella parvula HOM05D002724 ORTHO05D002995 1.2e-15 87.0 116 47.4
FAN05G1795 Fragaria x ananassa HOM05D002724 ORTHO05D002995 1.6e-15 86.7 126 42.1
FAN05G4176 Fragaria x ananassa HOM05D002724 ORTHO05D002995 1.6e-15 86.7 126 42.1
RcHm_v2.0_Chr3g0472291 Rosa chinensis HOM05D002724 ORTHO05D002995 1.6e-15 86.7 115 46.1
RcHm_v2.0_Chr5g0005941 Rosa chinensis HOM05D002724 ORTHO05D002995 1.6e-15 86.7 74 60.8
vmacro09533 Vaccinium macrocarpon HOM05D002724 ORTHO05D002995 2.1e-15 86.3 75 58.7
Cc05_g12070 Coffea canephora HOM05D002724 ORTHO05D002995 2.7e-15 85.9 75 60.0
Migut.H01935 Erythranthe guttata HOM05D002724 ORTHO05D002995 3.6e-15 85.5 120 39.2
Solyc01g104920.3 Solanum lycopersicum HOM05D002724 ORTHO05D002995 3.6e-15 85.5 75 56.0
MBI07_g30175_MAGBIO Magnolia biondii HOM05D002724 ORTHO05D002995 7.9e-15 84.3 133 42.9
SMO118G0057 Selaginella moellendorffii HOM05D002724 ORTHO05D002995 7.9e-15 84.3 127 41.7
AUR62034292 Chenopodium quinoa HOM05D002724 ORTHO05D002995 1.4e-14 83.6 115 43.5
FAN11G1358 Fragaria x ananassa HOM05D002724 ORTHO05D002995 3.0e-14 82.4 126 42.1
HanXRQChr11g0328421 Helianthus annuus HOM05D002724 ORTHO05D002995 6.7e-14 81.3 120 45.8
FAN23G2429 Fragaria x ananassa HOM05D002724 ORTHO05D002995 8.8e-14 80.9 126 39.7
FvH4_1g07580 Fragaria vesca HOM05D002724 ORTHO05D002995 1.5e-13 80.1 126 38.9
FAN19G0887 Fragaria x ananassa HOM05D002724 ORTHO05D002995 1.5e-13 80.1 126 38.9
RcHm_v2.0_Chr4g0419821 Rosa chinensis HOM05D002724 ORTHO05D002995 2.6e-13 79.3 97 51.5
SGA_v2.0_scaffold46G17492 Striga asiatica HOM05D002724 ORTHO05D002995 3.3e-13 79.0 124 39.5
FAN21G2993 Fragaria x ananassa HOM05D002724 ORTHO05D002995 5.7e-13 78.2 123 40.7
FAN26G3213 Fragaria x ananassa HOM05D002724 ORTHO05D002995 1.3e-12 77.0 126 38.1
PRCOL_00004338 Prasinoderma coloniale HOM05D002724 ORTHO05D002995 8.2e-12 74.3 119 41.2
SalBow7G4564 Salvia bowleyana HOM05D002724 ORTHO05D002995 3.1e-11 72.4 196 29.6
DCAR_019550 Daucus carota HOM05D002724 ORTHO05D002995 2.0e-10 69.7 123 38.2
FAN28G0882 Fragaria x ananassa HOM05D002724 ORTHO05D002995 2.6e-10 69.3 106 41.5
COL.COLO4_31469 Corchorus olitorius HOM05D002724 ORTHO05D002995 3.5e-10 68.9 125 36.0
FAN26G2256 Fragaria x ananassa HOM05D002724 ORTHO05D002995 5.9e-10 68.2 126 37.3
Nitab4.5_0002383g0080 Nicotiana tabacum HOM05D002724 ORTHO05D002995 5.9e-10 68.2 103 44.7
PGSC0003DMG402029739 Solanum tuberosum HOM05D002724 ORTHO05D002995 5.9e-10 68.2 196 30.6
unitig_747.g22010 Utricularia gibba HOM05D002724 ORTHO05D002995 3.8e-09 65.5 117 38.5
Hund22909 Selenicereus undatus HOM05D002724 ORTHO05D002995 7.2e-08 61.2 104 42.3
QL05p060533 Quercus lobata HOM05D002724 ORTHO05D002995 1.2e-07 60.5 54 61.1
FvH4_4g07250 Fragaria vesca HOM05D002724 ORTHO05D002995 4.7e-07 58.5 59 59.3
arahy.Tifrunner.gnm1.ann1.6JI55L Arachis hypogaea HOM05D009422 ORTHO05D086738 4.0e-06 55.5 116 37.1
Eucgr.E03103 Eucalyptus grandis HOM05D002724 ORTHO05D002995 6.7e-06 54.7 47 55.3


User provided reference genes

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