Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_12924 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 5.1e-57 224.2 111 100.0
SEGI_38141 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 7.1e-43 177.2 120 77.5
MBI09_g26154_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 4.0e-30 134.8 107 60.7
MBI08_g41738_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 9.0e-30 133.7 120 56.7
CDE02G4267 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 1.3e-28 129.8 120 58.3
Nn4g26339 Nelumbo nucifera HOM05D004377 ORTHO05D005168 1.7e-28 129.4 120 54.2
SEGI_18353 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 3.8e-28 128.3 94 74.5
TAR629G1293 Trochodendron aralioides HOM05D004377 ORTHO05D005168 6.4e-28 127.5 107 61.7
Nn1g02340 Nelumbo nucifera HOM05D004377 ORTHO05D005168 1.4e-27 126.3 120 55.0
ATR0697G021 Amborella trichopoda HOM05D004377 ORTHO05D005168 3.2e-27 125.2 120 52.5
CSS0001039 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 4.2e-27 124.8 120 55.0
CSS0042619 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 5.5e-27 124.4 119 55.5
Dinv39164 Davidia involucrata HOM05D004377 ORTHO05D005168 5.5e-27 124.4 120 52.5
Cfa012684 Carpinus fangiana HOM05D004377 ORTHO05D005168 1.6e-26 122.9 120 54.2
Actinidia10840 Actinidia chinensis HOM05D004377 ORTHO05D005168 2.1e-26 122.5 120 54.2
Haze_07947 Corylus avellana HOM05D004377 ORTHO05D005168 2.1e-26 122.5 122 53.3
Hma1.2p1_0316F.1_g122900 Hydrangea macrophylla HOM05D004377 ORTHO05D005168 2.1e-26 122.5 120 51.7
vmacro00002 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 2.1e-26 122.5 120 52.5
Dinv21652 Davidia involucrata HOM05D004377 ORTHO05D005168 3.5e-26 121.7 120 52.5
GSVIVG01006273001 Vitis vinifera HOM05D004377 ORTHO05D005168 3.5e-26 121.7 120 53.3
Actinidia02148 Actinidia chinensis HOM05D004377 ORTHO05D005168 1.3e-25 119.8 121 48.8
CDE05G2427 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 2.3e-25 119.0 120 55.0
Lj8A268T28 Lonicera japonica HOM05D004377 ORTHO05D005168 2.3e-25 119.0 120 51.7
Oeu012199.1 Olea europaea HOM05D004377 ORTHO05D005168 3.9e-25 118.2 120 52.5
HanXRQChr17g0549351 Helianthus annuus HOM05D004377 ORTHO05D005168 6.7e-25 117.5 120 50.8
Prupe.5G065700 Prunus persica HOM05D004377 ORTHO05D005168 6.7e-25 117.5 120 50.0
RcHm_v2.0_Chr7g0203831 Rosa chinensis HOM05D004377 ORTHO05D005168 6.7e-25 117.5 120 51.7
Aqoxy5G00459 Aquilegia oxysepala HOM05D004377 ORTHO05D005168 8.7e-25 117.1 120 50.8
FvH4_5g19370 Fragaria vesca HOM05D004377 ORTHO05D005168 8.7e-25 117.1 120 50.8
FAN08G2251 Fragaria x ananassa HOM05D004377 ORTHO05D005168 8.7e-25 117.1 120 50.8
FAN13G0320 Fragaria x ananassa HOM05D004377 ORTHO05D005168 8.7e-25 117.1 120 50.8
FAN18G3774 Fragaria x ananassa HOM05D004377 ORTHO05D005168 8.7e-25 117.1 120 50.8
Thecc.03G248500 Theobroma cacao HOM05D004377 ORTHO05D005168 8.7e-25 117.1 120 51.7
HanXRQChr03g0088831 Helianthus annuus HOM05D004377 ORTHO05D005168 1.1e-24 116.7 120 51.7
TAR375G0521 Trochodendron aralioides HOM05D004377 ORTHO05D005168 1.1e-24 116.7 124 50.8
TWI81G0568 Tripterygium wilfordii HOM05D004377 ORTHO05D005168 1.5e-24 116.3 120 50.8
PGR031G0408 Punica granatum HOM05D004377 ORTHO05D005168 1.9e-24 115.9 120 50.8
Rhsim07G0110500 Rhododendron simsii HOM05D004377 ORTHO05D005168 1.9e-24 115.9 120 52.5
arahy.Tifrunner.gnm1.ann1.ID9RWP Arachis hypogaea HOM05D004377 ORTHO05D005168 2.5e-24 115.5 107 51.4
Gohir.D12G218200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 2.5e-24 115.5 120 50.0
Gorai.008G233800 Gossypium raimondii HOM05D004377 ORTHO05D005168 2.5e-24 115.5 120 50.0
Cpa.g.sc29.192 Carica papaya HOM05D004377 ORTHO05D005168 3.3e-24 115.2 120 49.2
Cc08_g12200 Coffea canephora HOM05D004377 ORTHO05D005168 3.3e-24 115.2 120 48.3
Eucgr.D02097 Eucalyptus grandis HOM05D004377 ORTHO05D005168 3.3e-24 115.2 120 48.3
MD06G1053000 Malus domestica HOM05D004377 ORTHO05D005168 3.3e-24 115.2 120 50.0
Lsat_1_v5_gn_6_92481 Lactuca sativa HOM05D004377 ORTHO05D005168 4.3e-24 114.8 120 50.0
Nitab4.5_0002225g0040 Nicotiana tabacum HOM05D004377 ORTHO05D005168 4.3e-24 114.8 123 45.5
SGA_v2.0_scaffold199G41214 Striga asiatica HOM05D004377 ORTHO05D005168 4.3e-24 114.8 120 50.8
CiPaw.12G050900 Carya illinoinensis HOM05D004377 ORTHO05D005168 5.6e-24 114.4 120 50.8
Duzib205G1290 Durio zibethinus HOM05D004377 ORTHO05D005168 5.6e-24 114.4 120 50.8
Atru.chr9.1283 Acer truncatum HOM05D004377 ORTHO05D005168 7.4e-24 114.0 120 51.7
COL.COLO4_37134 Corchorus olitorius HOM05D004377 ORTHO05D005168 7.4e-24 114.0 120 50.0
DCAR_008505 Daucus carota HOM05D004377 ORTHO05D005168 7.4e-24 114.0 120 50.8
DCAR_006841 Daucus carota HOM05D004377 ORTHO05D005168 9.6e-24 113.6 120 50.8
Nitab4.5_0000712g0120 Nicotiana tabacum HOM05D004377 ORTHO05D005168 9.6e-24 113.6 120 45.8
PSO832G1836 Papaver somniferum HOM05D004377 ORTHO05D005168 9.6e-24 113.6 120 48.3
Potri.003G078900 Populus trichocarpa HOM05D004377 ORTHO05D005168 9.6e-24 113.6 120 50.0
vmacro14068 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 9.6e-24 113.6 120 50.8
MSTRG.12119 Avicennia marina HOM05D004377 ORTHO05D005168 1.3e-23 113.2 120 50.0
FAN04G2360 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.3e-23 113.2 120 50.0
Gohir.A12G215600 Gossypium hirsutum HOM05D004377 ORTHO05D005168 1.3e-23 113.2 120 48.3
RcHm_v2.0_Chr2g0120481 Rosa chinensis HOM05D004377 ORTHO05D005168 1.3e-23 113.2 120 49.2
Manes.02G041200 Manihot esculenta HOM05D004377 ORTHO05D005168 1.6e-23 112.8 120 48.3
CAN.G1227.21 Capsicum annuum HOM05D004377 ORTHO05D005168 2.1e-23 112.5 120 46.7
Lalb_Chr05g0221171 Lupinus albus HOM05D004377 ORTHO05D005168 2.1e-23 112.5 120 48.3
unitig_736.g22277 Utricularia gibba HOM05D004377 ORTHO05D005168 2.1e-23 112.5 120 50.0
Migut.A01127 Erythranthe guttata HOM05D004377 ORTHO05D005168 2.8e-23 112.1 120 50.0
Solyc08g007320.3 Solanum lycopersicum HOM05D004377 ORTHO05D005168 2.8e-23 112.1 120 46.7
Sopen08g003260 Solanum pennellii HOM05D004377 ORTHO05D005168 2.8e-23 112.1 120 46.7
PSO210G5659 Papaver somniferum HOM05D004377 ORTHO05D005168 3.7e-23 111.7 120 47.5
Ciclev10021569m.g Citrus clementina HOM05D004377 ORTHO05D005168 6.2e-23 110.9 120 48.3
ECA240G2341 Erigeron canadensis HOM05D004377 ORTHO05D005168 6.2e-23 110.9 120 49.2
Gohir.A11G027200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 8.2e-23 110.5 120 49.2
Lalb_Chr16g0386801 Lupinus albus HOM05D004377 ORTHO05D005168 8.2e-23 110.5 120 46.7
TAR374G0316 Trochodendron aralioides HOM05D004377 ORTHO05D005168 8.2e-23 110.5 120 52.5
Gohir.D11G026400 Gossypium hirsutum HOM05D004377 ORTHO05D005168 1.1e-22 110.2 111 52.3
Sed0026125 Sechium edule HOM05D004377 ORTHO05D005168 1.1e-22 110.2 120 49.2
THA.LOC104798366 Tarenaya hassleriana HOM05D004377 ORTHO05D005168 1.1e-22 110.2 121 47.9
Ah.12g054290 Amaranthus hybridus HOM05D004377 ORTHO05D005168 1.4e-22 109.8 121 49.6
MD04G1059900 Malus domestica HOM05D004377 ORTHO05D005168 1.4e-22 109.8 120 47.5
Peaxi162Scf00102g00106 Petunia axillaris HOM05D004377 ORTHO05D005168 1.4e-22 109.8 120 45.8
Sabra03G0049000 Salix brachista HOM05D004377 ORTHO05D005168 2.4e-22 109.0 120 49.2
Sp7g16770 Schrenkiella parvula HOM05D004377 ORTHO05D005168 2.4e-22 109.0 123 46.3
Glyma.17G143400 Glycine max HOM05D004377 ORTHO05D005168 3.1e-22 108.6 120 45.8
MELO3C005517.2 Cucumis melo HOM05D004377 ORTHO05D005168 4.0e-22 108.2 120 48.3
CsaV3_5G004410 Cucumis sativus L. HOM05D004377 ORTHO05D005168 4.0e-22 108.2 120 48.3
Mapoly0006s0223 Marchantia polymorpha HOM05D004377 ORTHO05D005168 4.0e-22 108.2 123 45.5
arahy.Tifrunner.gnm1.ann1.XFA1VC Arachis hypogaea HOM05D004377 ORTHO05D005168 5.3e-22 107.8 120 45.8
Sabra01G0125600 Salix brachista HOM05D004377 ORTHO05D005168 5.3e-22 107.8 120 47.5
CARHR224020 Cardamine hirsuta HOM05D004377 ORTHO05D005168 6.9e-22 107.5 123 47.2
Glyma.05G061700 Glycine max HOM05D004377 ORTHO05D005168 6.9e-22 107.5 120 45.0
Aa31sc151G40 Aethionema arabicum HOM05D006677 ORTHO05D008348 9.0e-22 107.1 121 47.1
AT4G17420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 9.0e-22 107.1 123 46.3
Carub.0007s2400 Capsella rubella HOM05D004377 ORTHO05D005168 9.0e-22 107.1 123 47.2
Oeu027011.1 Olea europaea HOM05D004377 ORTHO05D005168 9.0e-22 107.1 130 45.4
Psat4g072760 Pisum sativum HOM05D004377 ORTHO05D005168 9.0e-22 107.1 120 45.0
Sc07g0009230 Simmondsia chinensis HOM05D004377 ORTHO05D005168 9.0e-22 107.1 120 48.3
Phvul.003G222200 Phaseolus vulgaris HOM05D004377 ORTHO05D005168 1.2e-21 106.7 120 45.0
Ca_21977_v3 Cicer arietinum L. HOM05D004377 ORTHO05D005168 1.5e-21 106.3 120 45.8
Sp2g12120 Schrenkiella parvula HOM05D004377 ORTHO05D005168 1.5e-21 106.3 121 46.3
VMungo0251G2239 Vigna mungo HOM05D004377 ORTHO05D005168 2.6e-21 105.5 120 45.0
CANSAT21G0788 Cannabis sativa HOM05D004377 ORTHO05D005168 3.4e-21 105.1 120 48.3
Lj4g0001332 Lotus japonicus HOM05D004377 ORTHO05D005168 3.4e-21 105.1 120 45.8
Medtr4g100740 Medicago truncatula HOM05D004377 ORTHO05D005168 3.4e-21 105.1 120 45.8
Sed0028099 Sechium edule HOM05D004377 ORTHO05D005168 3.4e-21 105.1 120 47.5
BcaC06g34254 Brassica carinata HOM05D003894 ORTHO05D004584 4.5e-21 104.8 121 45.5
C07p31040 Brassica napus HOM05D006677 ORTHO05D008348 4.5e-21 104.8 121 45.5
Lalb_Chr04g0253671 Lupinus albus HOM05D004377 ORTHO05D005168 5.8e-21 104.4 120 47.5
BolC7t43648H Brassica oleracea HOM05D006677 ORTHO05D008348 7.6e-21 104.0 121 45.5
Carub.0008s0037 Capsella rubella HOM05D004377 ORTHO05D005168 7.6e-21 104.0 121 46.3
Potri.001G155900 Populus trichocarpa HOM05D004377 ORTHO05D005168 7.6e-21 104.0 120 46.7
AL7G37300 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 1.0e-20 103.6 123 46.3
EL10Ac5g12360 Beta vulgaris HOM05D004377 ORTHO05D005168 1.0e-20 103.6 121 46.3
ClCG01G004220 Citrullus lanatus HOM05D004377 ORTHO05D005168 1.0e-20 103.6 131 42.0
Thhalv10025916m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 1.0e-20 103.6 124 45.2
SHI09598 Sapria himalayana HOM05D004377 ORTHO05D005168 1.0e-20 103.6 120 43.3
TPR.G37661 Trifolium pratense HOM05D004377 ORTHO05D005168 1.0e-20 103.6 120 45.0
Os03g0747300 Oryza sativa ssp. japonica HOM05D004377 ORTHO05D005168 1.3e-20 103.2 120 45.0
AL8G10630 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 1.7e-20 102.8 121 46.3
AT5G47420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 1.7e-20 102.8 121 45.5
BcaNung00095 Brassica carinata HOM05D004377 ORTHO05D005168 1.7e-20 102.8 123 47.2
CARHR173960 Cardamine hirsuta HOM05D004377 ORTHO05D005168 1.7e-20 102.8 121 45.5
Thhalv10000986m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 1.7e-20 102.8 121 43.8
Zm00001eb057110 Zea mays HOM05D004377 ORTHO05D005168 2.2e-20 102.4 120 44.2
A01p19930 Brassica napus HOM05D004377 ORTHO05D005168 2.9e-20 102.1 123 46.3
A02p31280 Brassica napus HOM05D004377 ORTHO05D005168 2.9e-20 102.1 121 44.6
BraA01t01921Z Brassica rapa HOM05D004377 ORTHO05D005168 2.9e-20 102.1 123 46.3
BraA02t08132Z Brassica rapa HOM05D004377 ORTHO05D005168 2.9e-20 102.1 121 44.6
Lsat_1_v5_gn_3_1221 Lactuca sativa HOM05D004377 ORTHO05D005168 3.8e-20 101.7 120 46.7
Lj4g0011374 Lotus japonicus HOM05D004377 ORTHO05D005168 4.9e-20 101.3 120 43.3
BcaC09g50474 Brassica carinata HOM05D004377 ORTHO05D005168 6.5e-20 100.9 123 46.3
A01p19950 Brassica napus HOM05D004377 ORTHO05D005168 6.5e-20 100.9 123 46.3
Gorai.007G028700 Gossypium raimondii HOM05D004377 ORTHO05D005168 6.5e-20 100.9 107 50.5
HPP92_007932 Vanilla planifolia HOM05D004377 ORTHO05D005168 6.5e-20 100.9 120 42.5
HPP92_007952 Vanilla planifolia HOM05D004377 ORTHO05D005168 6.5e-20 100.9 120 42.5
C01p25030 Brassica napus HOM05D004377 ORTHO05D005168 4.2e-19 98.2 123 46.3
BolC1t02447H Brassica oleracea HOM05D004377 ORTHO05D005168 4.2e-19 98.2 123 46.3
SMO356G0134 Selaginella moellendorffii HOM05D004377 ORTHO05D005168 4.2e-19 98.2 121 45.5
SGA_v2.0_scaffold199G41183 Striga asiatica HOM05D004377 ORTHO05D005168 5.5e-19 97.8 118 45.8
BolC2t10957H Brassica oleracea HOM05D004377 ORTHO05D005168 9.3e-19 97.1 121 43.0
Nitab4.5_0000618g0130 Nicotiana tabacum HOM05D004377 ORTHO05D005168 2.7e-18 95.5 120 41.7
AagrBONN_evm.TU.Sc2ySwM_362.367 Anthoceros agrestis HOM05D004377 ORTHO05D005168 4.6e-18 94.7 124 41.1
BraA06t27381Z Brassica rapa HOM05D006677 ORTHO05D008348 6.0e-18 94.4 118 42.4
MBI09_g24445_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 2.3e-17 92.4 107 47.7
Duzib068G0502 Durio zibethinus HOM05D004377 ORTHO05D005168 5.1e-17 91.3 111 48.6
BcaC06g31391 Brassica carinata HOM05D004377 ORTHO05D005168 8.7e-17 90.5 122 41.8
AUR62007109 Chenopodium quinoa HOM05D004377 ORTHO05D005168 8.7e-17 90.5 121 44.6
BcaC03g16958 Brassica carinata HOM05D004377 ORTHO05D005168 1.3e-15 86.7 121 42.1
C02p48650 Brassica napus HOM05D004377 ORTHO05D005168 1.3e-15 86.7 121 42.1
arahy.Tifrunner.gnm1.ann1.E2A47G Arachis hypogaea HOM05D004377 ORTHO05D005168 1.5e-13 79.7 179 30.2
BcaC06g34256 Brassica carinata HOM05D004377 ORTHO05D005168 3.4e-13 78.6 122 40.2
RcHm_v2.0_Chr7g0203871 Rosa chinensis HOM05D004377 ORTHO05D005168 4.5e-13 78.2 107 43.9
AUR62019971 Chenopodium quinoa HOM05D004377 ORTHO05D005168 5.9e-13 77.8 101 43.6
SEGI_16571 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 7.6e-13 77.4 66 65.2
Actinidia14411 Actinidia chinensis HOM05D004377 ORTHO05D005168 1.4e-11 73.2 85 50.6
FAN24G1967 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.9e-11 72.8 102 44.1
FAN27G2545 Fragaria x ananassa HOM05D004377 ORTHO05D005168 4.6e-10 68.2 103 42.7
GSVIVG01015047001 Vitis vinifera HOM05D004377 ORTHO05D005168 8.8e-09 63.9 53 54.7
Hund14575 Selenicereus undatus HOM05D004377 ORTHO05D005168 4.3e-08 61.6 108 35.2
FAN15G2264 Fragaria x ananassa HOM05D004377 ORTHO05D005168 8.2e-07 57.4 118 34.7


User provided reference genes

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