Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_12235 Sequoiadendron giganteum HOM05D001447 ORTHO05D008204 6.2e-32 140.2 72 100.0
SalBow6G0254 Salvia bowleyana HOM05D001447 ORTHO05D008204 7.4e-25 116.7 68 83.8
Dinv36207 Davidia involucrata HOM05D001447 ORTHO05D008204 1.3e-24 115.9 68 82.4
COL.COLO4_36486 Corchorus olitorius HOM05D001312 ORTHO05D008204 1.6e-24 115.5 68 82.4
ECA238G0809 Erigeron canadensis HOM05D001447 ORTHO05D008204 1.6e-24 115.5 68 82.4
PGR119G1003 Punica granatum HOM05D001447 ORTHO05D008204 4.8e-24 114.0 68 80.9
MSTRG.18450 Avicennia marina HOM05D001447 ORTHO05D008204 6.2e-24 113.6 68 80.9
HanXRQChr14g0453731 Helianthus annuus HOM05D001447 ORTHO05D008204 6.2e-24 113.6 68 82.4
Oeu043288.1 Olea europaea HOM05D001447 ORTHO05D008204 6.2e-24 113.6 68 80.9
TAR623G0906 Trochodendron aralioides HOM05D001447 ORTHO05D008204 6.2e-24 113.6 68 80.9
GSVIVG01031555001 Vitis vinifera HOM05D001447 ORTHO05D008204 6.2e-24 113.6 68 80.9
Cpa.g.sc84.7 Carica papaya HOM05D001447 ORTHO05D008204 8.2e-24 113.2 68 80.9
Eucgr.J00729 Eucalyptus grandis HOM05D001447 ORTHO05D008204 8.2e-24 113.2 68 80.9
Manes.14G005700 Manihot esculenta HOM05D001447 ORTHO05D008204 8.2e-24 113.2 68 80.9
QL01p018045 Quercus lobata HOM05D001447 ORTHO05D008204 8.2e-24 113.2 69 78.3
HPP92_003245 Vanilla planifolia HOM05D001447 ORTHO05D008204 8.2e-24 113.2 68 80.9
Ciclev10014361m.g Citrus clementina HOM05D001447 ORTHO05D008204 1.1e-23 112.8 68 80.9
Gohir.A08G010700 Gossypium hirsutum HOM05D001447 ORTHO05D008204 1.1e-23 112.8 68 79.4
Gohir.D08G021000 Gossypium hirsutum HOM05D001447 ORTHO05D008204 1.1e-23 112.8 68 79.4
Gorai.004G015600 Gossypium raimondii HOM05D001447 ORTHO05D008204 1.1e-23 112.8 68 79.4
Lj1A305G18 Lonicera japonica HOM05D001447 ORTHO05D008204 1.1e-23 112.8 64 84.4
MD03G1170000 Malus domestica HOM05D001447 ORTHO05D008204 1.1e-23 112.8 68 79.4
Nitab4.5_0000733g0210 Nicotiana tabacum HOM05D001447 ORTHO05D008204 1.1e-23 112.8 66 80.3
Nitab4.5_0001663g0090 Nicotiana tabacum HOM05D001447 ORTHO05D008204 1.1e-23 112.8 68 77.9
Sc16g0011190 Simmondsia chinensis HOM05D001447 ORTHO05D008204 1.1e-23 112.8 68 80.9
AUR62039844 Chenopodium quinoa HOM05D001447 ORTHO05D008204 1.4e-23 112.5 67 79.1
Cc01_g06000 Coffea canephora HOM05D001447 ORTHO05D008204 1.4e-23 112.5 68 80.9
Hund21994 Selenicereus undatus HOM05D001447 ORTHO05D008204 1.4e-23 112.5 65 83.1
Aqoxy2G00279 Aquilegia oxysepala HOM05D001447 ORTHO05D008204 1.8e-23 112.1 68 76.5
arahy.Tifrunner.gnm1.ann1.FM4RDW Arachis hypogaea HOM05D001447 ORTHO05D008204 1.8e-23 112.1 68 80.9
arahy.Tifrunner.gnm1.ann1.PC9ITH Arachis hypogaea HOM05D001447 ORTHO05D008204 1.8e-23 112.1 68 80.9
Migut.N02358 Erythranthe guttata HOM05D001447 ORTHO05D008204 1.8e-23 112.1 68 79.4
MBI13_g04765_MAGBIO Magnolia biondii HOM05D001447 ORTHO05D008204 1.8e-23 112.1 68 77.9
Actinidia06934 Actinidia chinensis HOM05D001447 ORTHO05D008204 2.4e-23 111.7 68 80.9
Prupe.4G257100 Prunus persica HOM05D001447 ORTHO05D008204 2.4e-23 111.7 68 79.4
Ah.06g194360 Amaranthus hybridus HOM05D001447 ORTHO05D008204 3.1e-23 111.3 68 79.4
CiPaw.13G153500 Carya illinoinensis HOM05D001447 ORTHO05D008204 3.1e-23 111.3 68 80.9
Thecc.09G241300 Theobroma cacao HOM05D001447 ORTHO05D008204 3.1e-23 111.3 68 79.4
CAN.G676.47 Capsicum annuum HOM05D001447 ORTHO05D008204 4.0e-23 110.9 68 76.5
Duzib150G1307 Durio zibethinus HOM05D001447 ORTHO05D008204 4.0e-23 110.9 68 77.9
Hma1.2p1_1043F.1_g251240 Hydrangea macrophylla HOM05D001447 ORTHO05D008204 4.0e-23 110.9 68 77.9
EL10Ac4g10182 Beta vulgaris HOM05D001447 ORTHO05D008204 6.9e-23 110.2 68 76.5
CSS0026907 Camellia sinensis var. sinensis HOM05D001447 ORTHO05D008204 6.9e-23 110.2 68 77.9
DCAR_002090 Daucus carota HOM05D001447 ORTHO05D008204 6.9e-23 110.2 68 80.9
Thhalv10006894m.g Eutrema salsugineum HOM05D001447 ORTHO05D008204 6.9e-23 110.2 68 76.5
Lsat_1_v5_gn_2_111701 Lactuca sativa HOM05D001447 ORTHO05D008204 6.9e-23 110.2 68 76.5
Rhsim13G0217100 Rhododendron simsii HOM05D001447 ORTHO05D008204 6.9e-23 110.2 68 79.4
Solyc04g015490.4 Solanum lycopersicum HOM05D001447 ORTHO05D008204 6.9e-23 110.2 68 76.5
Sopen04g007560 Solanum pennellii HOM05D001447 ORTHO05D008204 6.9e-23 110.2 68 76.5
CANSAT54G2932 Cannabis sativa HOM05D001447 ORTHO05D008204 9.0e-23 109.8 68 76.5
THA.LOC104826486 Tarenaya hassleriana HOM05D001447 ORTHO05D008204 9.0e-23 109.8 68 76.5
AUR62000167 Chenopodium quinoa HOM05D001447 ORTHO05D008204 1.5e-22 109.0 65 80.0
Nn2g15047 Nelumbo nucifera HOM05D001447 ORTHO05D008204 1.5e-22 109.0 68 76.5
vmacro04117 Vaccinium macrocarpon HOM05D001447 ORTHO05D008204 1.5e-22 109.0 67 79.1
Glyma.01G226700 Glycine max HOM05D001447 ORTHO05D008204 2.0e-22 108.6 68 77.9
Atru.chr3.2626 Acer truncatum HOM05D001447 ORTHO05D008204 2.6e-22 108.2 68 77.9
BcaB07g34095 Brassica carinata HOM05D001447 ORTHO05D008204 2.6e-22 108.2 68 73.5
A06p05510 Brassica napus HOM05D001447 ORTHO05D008204 2.6e-22 108.2 68 73.5
C05p06620 Brassica napus HOM05D001447 ORTHO05D008204 2.6e-22 108.2 68 73.5
BolC5t29422H Brassica oleracea HOM05D001447 ORTHO05D008204 2.6e-22 108.2 68 73.5
BraA06t23759Z Brassica rapa HOM05D001447 ORTHO05D008204 2.6e-22 108.2 68 73.5
Cfa009826 Carpinus fangiana HOM05D001447 ORTHO05D008204 2.6e-22 108.2 63 82.5
Haze_23186 Corylus avellana HOM05D001447 ORTHO05D008204 2.6e-22 108.2 63 82.5
PSO339G2769 Papaver somniferum HOM05D001447 ORTHO05D008204 2.6e-22 108.2 68 76.5
PSO384G0341 Papaver somniferum HOM05D001447 ORTHO05D008204 2.6e-22 108.2 68 76.5
Sp1g07180 Schrenkiella parvula HOM05D001447 ORTHO05D008204 2.6e-22 108.2 68 75.0
ATR0721G176 Amborella trichopoda HOM05D001447 ORTHO05D008204 4.5e-22 107.5 69 69.6
ClCG02G023020 Citrullus lanatus HOM05D001447 ORTHO05D008204 4.5e-22 107.5 68 75.0
Os03g0811100 Oryza sativa ssp. japonica HOM05D001447 ORTHO05D008204 4.5e-22 107.5 68 76.5
Potri.009G049400 Populus trichocarpa HOM05D001447 ORTHO05D008204 4.5e-22 107.5 68 75.0
RcHm_v2.0_Chr5g0051161 Rosa chinensis HOM05D001447 ORTHO05D008204 4.5e-22 107.5 68 76.5
Glyma.11G016000 Glycine max HOM05D001447 ORTHO05D008204 5.8e-22 107.1 68 76.5
LjContig00222g0003711 Lotus japonicus HOM05D001447 ORTHO05D008204 5.8e-22 107.1 68 76.5
Lalb_Chr09g0320581 Lupinus albus HOM05D001447 ORTHO05D008204 7.6e-22 106.7 68 76.5
Phvul.002G165600 Phaseolus vulgaris HOM05D001447 ORTHO05D008204 7.6e-22 106.7 68 76.5
VMungo1215G0901 Vigna mungo HOM05D001447 ORTHO05D008204 7.6e-22 106.7 68 76.5
Zm00001eb212250 Zea mays HOM05D001447 ORTHO05D008204 7.6e-22 106.7 68 75.0
MELO3C014571.2 Cucumis melo HOM05D001447 ORTHO05D008204 1.3e-21 105.9 68 73.5
CsaV3_6G039120 Cucumis sativus L. HOM05D001447 ORTHO05D008204 1.3e-21 105.9 68 73.5
Ca_24494_v3 Cicer arietinum L. HOM05D001447 ORTHO05D008204 1.7e-21 105.5 64 79.7
Psat0s3604g0040 Pisum sativum HOM05D001447 ORTHO05D008204 1.7e-21 105.5 68 76.5
TPR.G37864 Trifolium pratense HOM05D001447 ORTHO05D008204 1.7e-21 105.5 68 76.5
SMO141G0042 Selaginella moellendorffii HOM05D001447 ORTHO05D008204 2.9e-21 104.8 68 73.5
Sed0024633 Sechium edule HOM05D001447 ORTHO05D008204 3.8e-21 104.4 68 72.1
AL1G18950 Arabidopsis lyrata HOM05D001447 ORTHO05D008204 5.0e-21 104.0 68 72.1
AT1G08520 Arabidopsis thaliana HOM05D001447 ORTHO05D008204 5.0e-21 104.0 68 72.1
Carub.0001s0788 Capsella rubella HOM05D001447 ORTHO05D008204 5.0e-21 104.0 68 72.1
CARHR008420 Cardamine hirsuta HOM05D001447 ORTHO05D008204 5.0e-21 104.0 68 72.1
AagrBONN_evm.TU.Sc2ySwM_228.1203 Anthoceros agrestis HOM05D001447 ORTHO05D008204 1.1e-20 102.8 68 72.1
Medtr5g009070 Medicago truncatula HOM05D001447 ORTHO05D008204 1.1e-20 102.8 68 73.5
Mapoly0034s0094 Marchantia polymorpha HOM05D001447 ORTHO05D008204 1.4e-20 102.4 68 70.6
FvH4_3g28280 Fragaria vesca HOM05D001447 ORTHO05D008204 2.5e-20 101.7 68 72.1
FAN11G0169 Fragaria x ananassa HOM05D001447 ORTHO05D008204 2.5e-20 101.7 68 72.1
FAN21G0684 Fragaria x ananassa HOM05D001312 ORTHO05D008204 2.5e-20 101.7 68 72.1
FAN25G0409 Fragaria x ananassa HOM05D001447 ORTHO05D008204 3.2e-20 101.3 67 71.6
Pp3c15_25050 Physcomitrium patens HOM05D001447 ORTHO05D008204 4.2e-20 100.9 67 68.7
Aa31sc55G60 Aethionema arabicum HOM05D001447 ORTHO05D008204 7.1e-20 100.1 86 61.6
FAN16G0520 Fragaria x ananassa HOM05D001447 ORTHO05D008204 7.1e-20 100.1 67 70.1
CBR_g18769 Chara braunii HOM05D001447 ORTHO05D008204 6.1e-19 97.1 68 66.2
Peaxi162Scf01713g00016 Petunia axillaris HOM05D001447 ORTHO05D008204 1.3e-18 95.9 56 78.6
Cre05.g242000 Chlamydomonas reinhardtii HOM05D001447 ORTHO05D008204 4.8e-16 87.4 67 61.2
MCO04G050 Micromonas commoda HOM05D001447 ORTHO05D008204 6.3e-16 87.0 68 63.2
PRCOL_00004019 Prasinoderma coloniale HOM05D001447 ORTHO05D008204 8.2e-16 86.7 68 64.7
CDE05G3570 Ceratophyllum demersum HOM05D007236 ORTHO05D008204 3.1e-07 58.2 32 78.1
arahy.Tifrunner.gnm1.ann1.F9SDQQ Arachis hypogaea HOM05D001447 ORTHO05D084033 4.1e-07 57.8 31 83.9
TWI39G0518 Tripterygium wilfordii HOM05D001447 ORTHO05D008204 4.1e-07 57.8 37 75.7
arahy.Tifrunner.gnm1.ann1.VYP3BN Arachis hypogaea HOM05D002048 ORTHO05D002146 1.2e-06 56.2 51 56.9


User provided reference genes

Program Settings