Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_11947 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 4.1e-245 850.9 417 100.0
SEGI_31206 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 7.6e-215 750.4 414 87.9
Pp3c9_3640 Physcomitrium patens HOM05D004578 ORTHO05D005529 2.1e-135 486.5 406 58.1
Mapoly0152s0014 Marchantia polymorpha HOM05D004578 ORTHO05D005529 8.4e-129 464.5 407 56.0
MBI16_g05839_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 1.2e-127 460.7 407 54.3
Nn8g40733 Nelumbo nucifera HOM05D004578 ORTHO05D005529 3.5e-127 459.1 414 54.1
PSO170G4894 Papaver somniferum HOM05D004578 ORTHO05D005529 6.6e-126 454.9 407 54.3
PSO063G3790 Papaver somniferum HOM05D004578 ORTHO05D005529 7.3e-125 451.4 413 53.5
CANSAT25G1430 Cannabis sativa HOM05D004578 ORTHO05D005529 5.2e-123 445.3 406 52.5
Duzib168G2341 Durio zibethinus HOM05D004578 ORTHO05D005529 1.5e-122 443.7 413 52.8
Ciclev10008459m.g Citrus clementina HOM05D004578 ORTHO05D005529 5.8e-122 441.8 413 53.8
TAR625G0669 Trochodendron aralioides HOM05D004578 ORTHO05D005529 9.9e-122 441.0 407 53.6
Gorai.010G121600 Gossypium raimondii HOM05D004578 ORTHO05D005529 4.9e-121 438.7 417 51.8
Thecc.09G008600 Theobroma cacao HOM05D004578 ORTHO05D005529 1.1e-120 437.6 414 51.4
Sabra06G0211200 Salix brachista HOM05D004578 ORTHO05D005529 2.4e-120 436.4 408 53.4
SMO115G0125 Selaginella moellendorffii HOM05D004578 ORTHO05D005529 2.4e-120 436.4 413 51.1
AagrBONN_evm.TU.Sc2ySwM_368.3376 Anthoceros agrestis HOM05D004578 ORTHO05D005529 3.2e-120 436.0 399 54.6
Gohir.A06G104800 Gossypium hirsutum HOM05D004578 ORTHO05D005529 4.2e-120 435.6 417 51.6
Cpa.g.sc23.31 Carica papaya HOM05D004578 ORTHO05D005529 5.4e-120 435.3 407 52.6
Gohir.D06G107000 Gossypium hirsutum HOM05D004578 ORTHO05D005529 5.4e-120 435.3 411 52.1
Sp4g03570 Schrenkiella parvula HOM05D004578 ORTHO05D005529 9.3e-120 434.5 409 53.1
COL.COLO4_19019 Corchorus olitorius HOM05D004578 ORTHO05D005529 2.7e-119 433.0 409 52.1
Ciclev10008463m.g Citrus clementina HOM05D004578 ORTHO05D005529 1.3e-118 430.6 415 52.5
AL4G15160 Arabidopsis lyrata HOM05D004578 ORTHO05D005529 3.9e-118 429.1 410 52.2
Cc08_g06480 Coffea canephora HOM05D004578 ORTHO05D005529 5.1e-118 428.7 406 52.5
BolC4t26970H Brassica oleracea HOM05D004578 ORTHO05D005529 1.9e-117 426.8 406 52.0
TAR383G0560 Trochodendron aralioides HOM05D004578 ORTHO05D005529 1.9e-117 426.8 400 53.2
A04p18950 Brassica napus HOM05D004578 ORTHO05D005529 3.3e-117 426.0 406 52.0
Prupe.1G458600 Prunus persica HOM05D004578 ORTHO05D005529 3.3e-117 426.0 409 51.8
BraA04t17495Z Brassica rapa HOM05D004578 ORTHO05D005529 4.3e-117 425.6 406 52.0
BcaC02g08438 Brassica carinata HOM05D004578 ORTHO05D005529 5.6e-117 425.2 406 51.7
C04p54190 Brassica napus HOM05D004578 ORTHO05D005529 5.6e-117 425.2 406 51.7
Atru.chr7.2661 Acer truncatum HOM05D004578 ORTHO05D005529 7.3e-117 424.9 412 52.4
FAN15G2443 Fragaria x ananassa HOM05D004578 ORTHO05D005529 7.3e-117 424.9 411 51.6
Aqoxy7G02848 Aquilegia oxysepala HOM05D004578 ORTHO05D005529 9.6e-117 424.5 412 50.7
Nitab4.5_0000555g0200 Nicotiana tabacum HOM05D004578 ORTHO05D005529 9.6e-117 424.5 408 51.2
CSS0030954 Camellia sinensis var. sinensis HOM05D004578 ORTHO05D005529 1.3e-116 424.1 409 50.6
Manes.16G134500 Manihot esculenta HOM05D004578 ORTHO05D005529 1.3e-116 424.1 413 50.8
CARHR117360 Cardamine hirsuta HOM05D004578 ORTHO05D005529 2.8e-116 422.9 409 50.1
Cc00_g13120 Coffea canephora HOM05D004578 ORTHO05D005529 2.8e-116 422.9 405 50.6
PGR044G1507 Punica granatum HOM05D004578 ORTHO05D005529 2.8e-116 422.9 410 51.2
Potri.018G008700 Populus trichocarpa HOM05D004578 ORTHO05D005529 3.6e-116 422.5 406 51.0
AT2G24580 Arabidopsis thaliana HOM05D004578 ORTHO05D005529 4.8e-116 422.2 411 51.3
ClCG05G026450 Citrullus lanatus HOM05D004578 ORTHO05D005529 4.8e-116 422.2 407 50.9
TAR383G1032 Trochodendron aralioides HOM05D004578 ORTHO05D005529 6.2e-116 421.8 400 53.0
FAN20G1103 Fragaria x ananassa HOM05D004578 ORTHO05D005529 1.1e-115 421.0 411 51.1
MBI13_g34048_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 1.4e-115 420.6 408 51.0
vmacro18918 Vaccinium macrocarpon HOM05D004578 ORTHO05D005529 1.4e-115 420.6 414 51.4
BcaB06g27986 Brassica carinata HOM05D004578 ORTHO05D005529 1.8e-115 420.2 406 51.2
Peaxi162Scf00045g01734 Petunia axillaris HOM05D004578 ORTHO05D005529 1.8e-115 420.2 410 50.7
Carub.0004s0400 Capsella rubella HOM05D004578 ORTHO05D005529 2.4e-115 419.9 409 51.3
AUR62037713 Chenopodium quinoa HOM05D004578 ORTHO05D005529 2.4e-115 419.9 405 51.6
QL12p025440 Quercus lobata HOM05D004578 ORTHO05D005529 4.0e-115 419.1 407 50.6
THA.LOC104819936 Tarenaya hassleriana HOM05D004578 ORTHO05D005529 4.0e-115 419.1 410 50.5
MD08G1126500 Malus domestica HOM05D004578 ORTHO05D005529 5.3e-115 418.7 407 51.1
Potri.006G272800 Populus trichocarpa HOM05D004578 ORTHO05D005529 6.9e-115 418.3 407 51.1
EL10Ac2g02417 Beta vulgaris HOM05D004578 ORTHO05D005529 9.0e-115 417.9 405 52.1
Aa31sc715G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 1.2e-114 417.5 408 51.0
Haze_21761 Corylus avellana HOM05D004578 ORTHO05D005529 1.2e-114 417.5 410 51.7
FAN27G0985 Fragaria x ananassa HOM05D004578 ORTHO05D005529 1.5e-114 417.2 411 50.9
ATR0626G173 Amborella trichopoda HOM05D004578 ORTHO05D005529 2.6e-114 416.4 405 48.6
Thhalv10000150m.g Eutrema salsugineum HOM05D004578 ORTHO05D005529 3.4e-114 416.0 407 50.6
Dinv04517 Davidia involucrata HOM05D004578 ORTHO05D005529 4.5e-114 415.6 416 50.5
FvH4_2g36660 Fragaria vesca HOM05D004578 ORTHO05D005529 4.5e-114 415.6 411 50.9
MD15G1106400 Malus domestica HOM05D004578 ORTHO05D005529 7.6e-114 414.8 406 50.5
AUR62020290 Chenopodium quinoa HOM05D004578 ORTHO05D005529 9.9e-114 414.5 405 51.1
Prupe.1G458900 Prunus persica HOM05D004578 ORTHO05D005529 9.9e-114 414.5 414 50.5
Solyc08g006430.4 Solanum lycopersicum HOM05D004578 ORTHO05D005529 9.9e-114 414.5 410 49.5
TWI32G0020 Tripterygium wilfordii HOM05D004578 ORTHO05D005529 9.9e-114 414.5 411 50.1
Lj7P748T39 Lonicera japonica HOM05D004578 ORTHO05D005529 1.3e-113 414.1 406 50.7
Aa31sc160G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 1.7e-113 413.7 408 50.7
Sabra18G0013200 Salix brachista HOM05D004578 ORTHO05D005529 2.9e-113 412.9 408 49.8
Sabra18G0015700 Salix brachista HOM05D004578 ORTHO05D005529 2.9e-113 412.9 408 49.8
Cfa013287 Carpinus fangiana HOM05D004578 ORTHO05D005529 3.8e-113 412.5 407 50.6
CsaV3_3G047160 Cucumis sativus L. HOM05D004578 ORTHO05D005529 4.9e-113 412.1 406 49.0
Manes.03G004800 Manihot esculenta HOM05D004578 ORTHO05D005529 6.4e-113 411.8 404 49.3
Ah.13g067790 Amaranthus hybridus HOM05D004578 ORTHO05D005529 8.4e-113 411.4 405 51.6
CDE02G4459 Ceratophyllum demersum HOM05D004578 ORTHO05D005529 1.9e-112 410.2 395 51.9
Sed0023873 Sechium edule HOM05D004578 ORTHO05D005529 1.9e-112 410.2 411 50.1
DCAR_000687 Daucus carota HOM05D004578 ORTHO05D005529 4.2e-112 409.1 414 49.3
Sopen08g002370 Solanum pennellii HOM05D004578 ORTHO05D005529 4.2e-112 409.1 409 48.9
Actinidia06432 Actinidia chinensis HOM05D004578 ORTHO05D005529 7.1e-112 408.3 416 47.8
Migut.A00428 Erythranthe guttata HOM05D004578 ORTHO05D005529 1.2e-111 407.5 405 50.1
CAN.G673.19 Capsicum annuum HOM05D004578 ORTHO05D005529 1.6e-111 407.1 408 49.5
CiPaw.07G211300 Carya illinoinensis HOM05D004578 ORTHO05D005529 2.1e-111 406.8 408 50.2
Hund13109 Selenicereus undatus HOM05D004578 ORTHO05D005529 2.1e-111 406.8 407 48.9
Cfa013284 Carpinus fangiana HOM05D004578 ORTHO05D005529 4.6e-111 405.6 407 49.6
QL12p025516 Quercus lobata HOM05D004578 ORTHO05D005529 7.9e-111 404.8 412 49.0
MELO3C003620.2 Cucumis melo HOM05D004578 ORTHO05D005529 1.0e-110 404.4 407 48.6
Eucgr.C04012 Eucalyptus grandis HOM05D004578 ORTHO05D005529 5.1e-110 402.1 414 49.3
Nitab4.5_0004131g0050 Nicotiana tabacum HOM05D004578 ORTHO05D005529 1.9e-109 400.2 396 49.2
Rhsim10G0084800 Rhododendron simsii HOM05D004578 ORTHO05D005529 5.6e-109 398.7 396 48.7
PGSC0003DMG400026320 Solanum tuberosum HOM05D004578 ORTHO05D005529 5.6e-109 398.7 408 48.0
MSTRG.25795 Avicennia marina HOM05D004578 ORTHO05D005529 1.4e-107 394.0 405 48.9
BcaC02g08437 Brassica carinata HOM05D004578 ORTHO05D005529 1.8e-107 393.7 405 49.1
Sc07g0007360 Simmondsia chinensis HOM05D004578 ORTHO05D005529 1.8e-107 393.7 406 48.5
Eucgr.C04016 Eucalyptus grandis HOM05D004578 ORTHO05D005529 2.4e-107 393.3 397 49.4
CiPaw.08G020700 Carya illinoinensis HOM05D004578 ORTHO05D005529 3.1e-107 392.9 406 49.5
Eucgr.C04014 Eucalyptus grandis HOM05D004578 ORTHO05D005529 5.3e-107 392.1 395 50.1
Lsat_1_v5_gn_9_4341 Lactuca sativa HOM05D004578 ORTHO05D005529 6.9e-107 391.7 424 48.1
arahy.Tifrunner.gnm1.ann1.M0AD1K Arachis hypogaea HOM05D004578 ORTHO05D005529 2.6e-106 389.8 403 48.1
arahy.Tifrunner.gnm1.ann1.W2ETIH Arachis hypogaea HOM05D004578 ORTHO05D005529 1.3e-105 387.5 403 48.4
SalBow4G0906 Salvia bowleyana HOM05D004578 ORTHO05D005529 1.3e-105 387.5 408 49.5
Cfa013283 Carpinus fangiana HOM05D004578 ORTHO05D005529 8.4e-105 384.8 397 47.6
ECA247G3559 Erigeron canadensis HOM05D004578 ORTHO05D005529 1.1e-104 384.4 420 47.9
Phvul.009G102000 Phaseolus vulgaris HOM05D004578 ORTHO05D005529 1.1e-104 384.4 395 47.3
SGA_v2.0_scaffold193G40672 Striga asiatica HOM05D004578 ORTHO05D005529 3.2e-104 382.9 406 46.8
HanXRQChr15g0466441 Helianthus annuus HOM05D004578 ORTHO05D005529 9.3e-104 381.3 423 46.1
VMungo1309G1783 Vigna mungo HOM05D004578 ORTHO05D005529 2.7e-103 379.8 395 46.8
Medtr3g108990 Medicago truncatula HOM05D004578 ORTHO05D005529 7.9e-103 378.3 403 47.4
Lj1g0024454 Lotus japonicus HOM05D004578 ORTHO05D005529 3.0e-102 376.3 395 47.1
Glyma.04G076300 Glycine max HOM05D004578 ORTHO05D005529 5.1e-102 375.6 400 44.8
Psat5g024080 Pisum sativum HOM05D004578 ORTHO05D005529 4.3e-101 372.5 399 45.9
Os09g0498500 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 7.4e-101 371.7 423 47.3
RcHm_v2.0_Chr6g0305131 Rosa chinensis HOM05D004578 ORTHO05D005529 7.4e-101 371.7 406 46.6
Ca_15651_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 2.1e-100 370.2 395 46.3
Ca_15659_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 2.1e-100 370.2 395 46.3
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 2.8e-100 369.8 414 47.8
TPR.G12360 Trifolium pratense HOM05D004578 ORTHO05D005529 4.8e-100 369.0 406 43.8
unitig_32.g11237 Utricularia gibba HOM05D004578 ORTHO05D005529 6.2e-100 368.6 396 46.7
Medtr3g109010 Medicago truncatula HOM05D004578 ORTHO05D005529 3.1e-99 366.3 401 45.1
HanXRQChr10g0282951 Helianthus annuus HOM05D004578 ORTHO05D005529 2.6e-98 363.2 418 45.5
Ca_15652_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 4.5e-98 362.5 384 47.9
Ca_15660_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 4.5e-98 362.5 384 47.9
TPR.G12429 Trifolium pratense HOM05D004578 ORTHO05D005529 1.6e-95 354.0 405 44.0
Actinidia22261 Actinidia chinensis HOM05D004578 ORTHO05D005529 7.9e-95 351.7 408 44.9
Prupe.1G458800 Prunus persica HOM05D004578 ORTHO05D005529 5.1e-94 349.0 412 46.4
Os01g0316100 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 3.7e-92 342.8 408 44.1
Os12g0543600 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 5.3e-91 339.0 395 46.8
Zm00001eb127180 Zea mays HOM05D004578 ORTHO05D005529 4.5e-90 335.9 410 44.9
Lalb_Chr11g0064181 Lupinus albus HOM05D004578 ORTHO05D005529 2.5e-88 330.1 403 42.9
Zm00001eb340420 Zea mays HOM05D004578 ORTHO05D005529 2.7e-87 326.6 414 43.0
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 3.1e-83 313.2 415 42.2
PRCOL_00000645 Prasinoderma coloniale HOM05D004578 ORTHO05D005529 2.2e-68 263.8 445 36.6
HPP92_017393 Vanilla planifolia HOM05D004578 ORTHO05D005529 9.4e-64 248.4 400 37.2
Gohir.D06G106866 Gossypium hirsutum HOM05D004578 ORTHO05D005529 1.7e-60 237.7 415 35.2
Gorai.010G121400 Gossypium raimondii HOM05D004578 ORTHO05D005529 2.4e-59 233.8 299 41.8
Psat5g025320 Pisum sativum HOM05D004578 ORTHO05D005529 2.4e-59 233.8 253 44.7
Oeu008773.1 Olea europaea HOM05D004578 ORTHO05D005529 1.6e-55 221.1 409 34.0
Oeu018556.1 Olea europaea HOM05D004578 ORTHO05D005529 2.3e-54 217.2 404 34.2
GSVIVG01033177001 Vitis vinifera HOM05D004578 ORTHO05D005529 2.2e-52 210.7 410 32.4
Hma1.2p1_1588F.1_g292320 Hydrangea macrophylla HOM05D004578 ORTHO05D005529 2.0e-50 204.1 406 33.5
unitig_32.g11239 Utricularia gibba HOM05D004578 ORTHO05D005529 3.0e-46 190.3 191 45.0
Lalb_Chr23g0269171 Lupinus albus HOM05D004578 ORTHO05D005529 1.1e-35 155.2 168 45.8
Cfa013285 Carpinus fangiana HOM05D004578 ORTHO05D005529 3.2e-35 153.7 222 40.1
Ca_28680_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.9e-32 144.4 383 29.2
Cre12.g493500 Chlamydomonas reinhardtii HOM05D004578 ORTHO05D005529 5.4e-27 126.3 417 29.5
unitig_32.g11238 Utricularia gibba HOM05D004578 ORTHO05D005529 7.8e-26 122.5 91 62.6
HanXRQChr10g0282961 Helianthus annuus HOM05D004578 ORTHO05D005529 1.0e-25 122.1 163 40.5
TPR.G12332 Trifolium pratense HOM05D004578 ORTHO05D005529 8.9e-22 109.0 78 61.5
Cc08_g06580 Coffea canephora HOM05D004578 ORTHO05D005529 1.4e-19 101.7 175 34.9
Actinidia22262 Actinidia chinensis HOM05D004578 ORTHO05D005529 8.9e-14 82.4 330 24.8
VMungo1041G0001 Vigna mungo HOM05D004578 ORTHO05D005529 2.4e-06 57.8 48 68.8
AUR62038254 Chenopodium quinoa HOM05D005694 ORTHO05D007402 9.0e-06 55.8 410 22.9


User provided reference genes

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