Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_11727 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 0.0e+00 4748.3 2339 100.0
ATR0618G139 Amborella trichopoda HOM05D003919 ORTHO05D004906 0.0e+00 2772.7 2290 58.4
PSO782G3793 Papaver somniferum HOM05D003919 ORTHO05D004906 0.0e+00 2736.4 2297 58.2
Nn4g24949 Nelumbo nucifera HOM05D003919 ORTHO05D004906 0.0e+00 2726.0 2299 57.9
CiPaw.05G168700 Carya illinoinensis HOM05D003919 ORTHO05D004906 0.0e+00 2687.1 2283 58.2
Cfa008737 Carpinus fangiana HOM05D003919 ORTHO05D004906 0.0e+00 2669.4 2271 57.8
Aqoxy3G04259 Aquilegia oxysepala HOM05D003919 ORTHO05D004906 0.0e+00 2662.5 2300 57.7
Prupe.1G347000 Prunus persica HOM05D003919 ORTHO05D004906 0.0e+00 2653.6 2271 57.4
Haze_11754 Corylus avellana HOM05D003919 ORTHO05D004906 0.0e+00 2644.4 2273 57.1
QL03p046003 Quercus lobata HOM05D003919 ORTHO05D004906 0.0e+00 2643.2 2244 57.8
CSS0046709 Camellia sinensis var. sinensis HOM05D003919 ORTHO05D004906 0.0e+00 2638.6 2270 57.2
RcHm_v2.0_Chr4g0446631 Rosa chinensis HOM05D003919 ORTHO05D004906 0.0e+00 2632.4 2274 56.8
Duzib132G0455 Durio zibethinus HOM05D003919 ORTHO05D004906 0.0e+00 2627.8 2273 56.6
Actinidia04322 Actinidia chinensis HOM05D003919 ORTHO05D004906 0.0e+00 2625.9 2249 57.4
Atru.chr11.1166 Acer truncatum HOM05D003919 ORTHO05D004906 0.0e+00 2622.4 2269 56.5
Thecc.02G160300 Theobroma cacao HOM05D003919 ORTHO05D004906 0.0e+00 2622.0 2272 56.5
FvH4_4g36870 Fragaria vesca HOM05D003919 ORTHO05D004906 0.0e+00 2621.7 2271 56.1
MD16G1001800 Malus domestica HOM05D003919 ORTHO05D004906 0.0e+00 2614.3 2269 56.8
TWI53G0046 Tripterygium wilfordii HOM05D003919 ORTHO05D004906 0.0e+00 2607.8 2267 56.6
FAN17G2968 Fragaria x ananassa HOM05D003919 ORTHO05D004906 0.0e+00 2599.7 2271 55.9
Gorai.008G149000 Gossypium raimondii HOM05D003919 ORTHO05D004906 0.0e+00 2594.7 2294 55.9
Gohir.D12G137500 Gossypium hirsutum HOM05D003919 ORTHO05D004906 0.0e+00 2593.5 2294 55.8
THA.LOC104819381 Tarenaya hassleriana HOM05D003919 ORTHO05D004906 0.0e+00 2592.4 2267 55.9
Ciclev10030469m.g Citrus clementina HOM05D003919 ORTHO05D004906 0.0e+00 2591.6 2272 56.1
Rhsim09G0081500 Rhododendron simsii HOM05D003919 ORTHO05D004906 0.0e+00 2588.9 2283 56.2
Sed0027848 Sechium edule HOM05D003919 ORTHO05D004906 0.0e+00 2583.1 2273 55.7
DCAR_026901 Daucus carota HOM05D003919 ORTHO05D004906 0.0e+00 2581.2 2309 55.0
CsaV3_7G030590 Cucumis sativus L. HOM05D003919 ORTHO05D004906 0.0e+00 2578.5 2272 55.1
MELO3C023597.2 Cucumis melo HOM05D003919 ORTHO05D004906 0.0e+00 2576.6 2273 55.3
vmacro10895 Vaccinium macrocarpon HOM05D003919 ORTHO05D004906 0.0e+00 2575.4 2380 54.6
Potri.005G093000 Populus trichocarpa HOM05D003919 ORTHO05D004906 0.0e+00 2563.5 2277 55.6
Thhalv10003499m.g Eutrema salsugineum HOM05D003919 ORTHO05D004906 0.0e+00 2553.9 2265 55.0
A03p46400 Brassica napus HOM05D003919 ORTHO05D004906 0.0e+00 2551.9 2267 55.3
Carub.0006s2090 Capsella rubella HOM05D003919 ORTHO05D004906 0.0e+00 2551.5 2264 55.4
Aa31LG11G2600 Aethionema arabicum HOM05D003919 ORTHO05D004906 0.0e+00 2549.6 2265 54.9
BraA03t13766Z Brassica rapa HOM05D003919 ORTHO05D004906 0.0e+00 2549.2 2266 55.2
Lj2g0026278 Lotus japonicus HOM05D003919 ORTHO05D004906 0.0e+00 2548.5 2272 55.5
BolC7t44964H Brassica oleracea HOM05D003919 ORTHO05D004906 0.0e+00 2546.2 2265 55.5
PGR044G0490 Punica granatum HOM05D003919 ORTHO05D004906 0.0e+00 2543.8 2262 55.3
AL6G34300 Arabidopsis lyrata HOM05D003919 ORTHO05D004906 0.0e+00 2543.5 2265 55.1
CARHR190420 Cardamine hirsuta HOM05D003919 ORTHO05D004906 0.0e+00 2543.5 2265 55.2
Sabra05G0077100 Salix brachista HOM05D003919 ORTHO05D004906 0.0e+00 2543.5 2277 55.2
AT5G23110 Arabidopsis thaliana HOM05D003919 ORTHO05D004906 0.0e+00 2542.7 2265 55.3
Mapoly0175s0011 Marchantia polymorpha HOM05D003919 ORTHO05D004906 0.0e+00 2542.3 2309 55.0
FAN07G2510 Fragaria x ananassa HOM05D003919 ORTHO05D004906 0.0e+00 2538.1 2271 55.1
CAN.G157.22 Capsicum annuum HOM05D003919 ORTHO05D004906 0.0e+00 2534.2 2297 54.5
Medtr1g037310 Medicago truncatula HOM05D003919 ORTHO05D004906 0.0e+00 2531.9 2273 55.1
CDE08G0505 Ceratophyllum demersum HOM05D003919 ORTHO05D004906 0.0e+00 2530.0 2306 54.4
ClCG09G004560 Citrullus lanatus HOM05D003919 ORTHO05D004906 0.0e+00 2529.6 2221 55.4
Ca_25292_v3 Cicer arietinum L. HOM05D003919 ORTHO05D004906 0.0e+00 2523.8 2272 55.1
Peaxi162Scf00363g00329 Petunia axillaris HOM05D003919 ORTHO05D004906 0.0e+00 2523.4 2287 54.4
Sp2g24010 Schrenkiella parvula HOM05D003919 ORTHO05D004906 0.0e+00 2523.4 2265 54.7
Os04g0675101 Oryza sativa ssp. japonica HOM05D003919 ORTHO05D004906 0.0e+00 2523.0 2242 55.2
ECA233G1217 Erigeron canadensis HOM05D003919 ORTHO05D004906 0.0e+00 2521.5 2274 54.9
Sopen02g003520 Solanum pennellii HOM05D003919 ORTHO05D004906 0.0e+00 2521.5 2298 54.4
TPR.G8246 Trifolium pratense HOM05D003919 ORTHO05D004906 0.0e+00 2520.7 2274 54.8
Cc11_g02410 Coffea canephora HOM05D003919 ORTHO05D004906 0.0e+00 2520.3 2280 54.7
AUR62017695 Chenopodium quinoa HOM05D003919 ORTHO05D004906 0.0e+00 2516.5 2312 54.2
Zm00001eb066370 Zea mays HOM05D003919 ORTHO05D004906 0.0e+00 2512.6 2244 54.8
Hund24370 Selenicereus undatus HOM05D003919 ORTHO05D004906 0.0e+00 2511.1 2287 54.4
Eucgr.J00863 Eucalyptus grandis HOM05D003919 ORTHO05D004906 0.0e+00 2510.7 2271 54.4
AUR62015231 Chenopodium quinoa HOM05D003919 ORTHO05D004906 0.0e+00 2507.6 2313 54.1
Glyma.20G003400 Glycine max HOM05D003919 ORTHO05D004906 0.0e+00 2507.6 2273 54.7
AagrBONN_evm.TU.Sc2ySwM_344.4345 Anthoceros agrestis HOM05D003919 ORTHO05D004906 0.0e+00 2501.1 2297 53.3
Ah.01g012280 Amaranthus hybridus HOM05D003919 ORTHO05D004906 0.0e+00 2494.9 2273 54.0
Lsat_1_v5_gn_8_31660 Lactuca sativa HOM05D003919 ORTHO05D004906 0.0e+00 2491.5 2252 55.0
HanXRQChr12g0366421 Helianthus annuus HOM05D003919 ORTHO05D004906 0.0e+00 2488.4 2253 54.4
Gohir.A12G134051 Gossypium hirsutum HOM05D003919 ORTHO05D004906 0.0e+00 2485.3 2294 54.1
Psat6g099280 Pisum sativum HOM05D003919 ORTHO05D004906 0.0e+00 2479.5 2299 53.9
Migut.J01108 Erythranthe guttata HOM05D003919 ORTHO05D004906 0.0e+00 2469.1 2260 53.2
EL10Ac9g22945 Beta vulgaris HOM05D003919 ORTHO05D004906 0.0e+00 2461.4 2290 53.3
TAR374G1487 Trochodendron aralioides HOM05D003919 ORTHO05D004906 0.0e+00 2452.9 2004 59.0
Solyc02g014190.4 Solanum lycopersicum HOM05D003919 ORTHO05D004906 0.0e+00 2442.2 2297 53.0
SGA_v2.0_scaffold17G08205 Striga asiatica HOM05D003919 ORTHO05D004906 0.0e+00 2438.3 2284 52.3
Glyma.09G282200 Glycine max HOM05D003919 ORTHO05D004906 0.0e+00 2428.3 2177 55.0
Pp3c9_15860 Physcomitrium patens HOM05D003919 ORTHO05D004906 0.0e+00 2426.7 2300 52.7
COL.COLO4_13755 Corchorus olitorius HOM05D003919 ORTHO05D004906 0.0e+00 2359.7 2040 56.7
Manes.04G066100 Manihot esculenta HOM05D003919 ORTHO05D004906 0.0e+00 2295.4 1994 55.9
FAN12G0111 Fragaria x ananassa HOM05D003919 ORTHO05D004906 0.0e+00 2279.6 2168 53.1
Sc06g0007940 Simmondsia chinensis HOM05D003919 ORTHO05D004906 0.0e+00 2176.4 1962 55.4
SMO164G0254 Selaginella moellendorffii HOM05D003919 ORTHO05D004906 0.0e+00 2081.2 2260 47.8
C07p44420 Brassica napus HOM05D003919 ORTHO05D004906 0.0e+00 2040.4 1845 54.5
Nitab4.5_0000405g0040 Nicotiana tabacum HOM05D003919 ORTHO05D004906 0.0e+00 1887.8 2238 44.2
Nitab4.5_0003853g0020 Nicotiana tabacum HOM05D003919 ORTHO05D004906 0.0e+00 1884.0 2238 44.1
arahy.Tifrunner.gnm1.ann1.FE7SUA Arachis hypogaea HOM05D003919 ORTHO05D004906 0.0e+00 1870.1 1679 56.0
GSVIVG01012044001 Vitis vinifera HOM05D003919 ORTHO05D004906 0.0e+00 1819.3 2271 45.0
Oeu055859.1 Olea europaea HOM05D003919 ORTHO05D004906 0.0e+00 1703.7 2211 43.0
Lj6A719G43 Lonicera japonica HOM05D003919 ORTHO05D004906 0.0e+00 1427.2 1187 58.4
Lalb_Chr04g0258931 Lupinus albus HOM05D003919 ORTHO05D004906 0.0e+00 1336.2 2277 35.2
Dinv11717 Davidia involucrata HOM05D003919 ORTHO05D004906 0.0e+00 1270.0 1065 58.8
SEGI_18724 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 0.0e+00 1266.5 623 100.0
MCO02G364 Micromonas commoda HOM05D003919 ORTHO05D004906 0.0e+00 1229.9 2471 33.3
Lj6C719G10 Lonicera japonica HOM05D003919 ORTHO05D004906 0.0e+00 1151.3 1035 54.6
Cpa.g.sc0.155 Carica papaya HOM05D003919 ORTHO05D004906 4.1e-281 973.0 1096 48.4
HPP92_012909 Vanilla planifolia HOM05D003919 ORTHO05D004906 7.4e-259 899.0 701 63.5
Cre01.g044850 Chlamydomonas reinhardtii HOM05D003919 ORTHO05D004906 7.5e-251 872.5 3043 26.6
Cpa.g.sc0.156 Carica papaya HOM05D003919 ORTHO05D004906 5.4e-233 813.1 1371 36.8
Gohir.A12G133950 Gossypium hirsutum HOM05D003919 ORTHO05D004906 3.2e-225 787.3 638 61.6
SEGI_14080 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 1.4e-196 692.2 337 100.0
HPP92_012908 Vanilla planifolia HOM05D003919 ORTHO05D004906 2.7e-152 545.0 565 48.8
GSVIVG01014936001 Vitis vinifera HOM05D003919 ORTHO05D004906 5.2e-143 514.2 744 39.0
SEGI_33576 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 1.1e-129 469.9 227 100.0
SEGI_33076 Sequoiadendron giganteum HOM05D003919 ORTHO05D004188 5.2e-119 434.5 503 51.1
HPP92_012876 Vanilla planifolia HOM05D003919 ORTHO05D004906 2.7e-107 395.6 1218 29.2
Psat4g123280 Pisum sativum HOM05D003919 ORTHO05D004906 2.7e-99 369.0 366 48.1
Phvul.003G005926 Phaseolus vulgaris HOM05D003919 ORTHO05D004906 2.3e-90 339.3 1451 23.8
MBI03_g34502_MAGBIO Magnolia biondii HOM05D003919 ORTHO05D004906 3.9e-90 338.6 243 66.7
FAN25G1432 Fragaria x ananassa HOM05D003919 ORTHO05D004906 1.3e-85 323.6 282 56.7
CiPaw.05G168800 Carya illinoinensis HOM05D003919 ORTHO05D004906 6.4e-85 321.2 1292 25.1
Cpa.g.sc0.157 Carica papaya HOM05D003919 ORTHO05D004906 1.4e-84 320.1 241 63.1
SEGI_20628 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 7.8e-83 314.3 156 100.0
VMungo0251G1503 Vigna mungo HOM05D003919 ORTHO05D004906 7.3e-81 307.8 269 55.8
FAN14G1298 Fragaria x ananassa HOM05D003919 ORTHO05D004906 3.6e-80 305.4 470 37.4
TAR374G0728 Trochodendron aralioides HOM05D003919 ORTHO05D004906 2.1e-75 289.7 255 56.9
arahy.Tifrunner.gnm1.ann1.5S361I Arachis hypogaea HOM05D003919 ORTHO05D004906 3.8e-69 268.9 261 52.5
FAN04G3043 Fragaria x ananassa HOM05D003919 ORTHO05D004906 3.8e-69 268.9 205 62.4
FAN22G1631 Fragaria x ananassa HOM05D003919 ORTHO05D004906 1.4e-60 240.4 249 45.4
CDE08G0032 Ceratophyllum demersum HOM05D003919 ORTHO05D004906 1.8e-58 233.4 611 26.8
CAN.G157.23 Capsicum annuum HOM05D003919 ORTHO05D004906 4.8e-56 225.3 520 29.8
Psat0s1455g0040 Pisum sativum HOM05D003919 ORTHO05D004906 9.3e-52 211.1 203 55.7
FAN27G1315 Fragaria x ananassa HOM05D003919 ORTHO05D004906 5.1e-50 205.3 160 60.6
Gohir.A12G134001 Gossypium hirsutum HOM05D003919 ORTHO05D004906 7.7e-46 191.4 166 57.2
SEGI_06826 Sequoiadendron giganteum HOM05D005695 ORTHO05D007810 6.1e-43 181.8 87 100.0
VMungo1383G1759 Vigna mungo HOM05D003919 ORTHO05D009038 4.2e-36 159.1 210 40.0
Psat1g095160 Pisum sativum HOM05D003919 ORTHO05D004906 4.4e-33 149.1 152 44.7
VMungo1383G1539 Vigna mungo HOM05D003919 ORTHO05D004906 4.7e-27 129.0 163 43.6
TAR374G1126 Trochodendron aralioides HOM05D003919 ORTHO05D036952 2.0e-25 123.6 170 37.6
SEGI_22186 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 5.3e-23 115.5 104 50.0
MBI03_g34501_MAGBIO Magnolia biondii HOM05D003919 ORTHO05D004906 2.0e-22 113.6 104 49.0
Cpa.g.sc0.159 Carica papaya HOM05D003919 ORTHO05D004906 1.0e-21 111.3 110 46.4
Oeu055860.1 Olea europaea HOM05D003919 ORTHO05D004906 2.9e-21 109.8 104 49.0
HPP92_012883 Vanilla planifolia HOM05D000456 ORTHO05D004906 9.4e-20 104.8 105 44.8
COL.COLO4_13756 Corchorus olitorius HOM05D003919 ORTHO05D004906 2.7e-19 103.2 104 47.1
C07p44430 Brassica napus HOM05D003919 ORTHO05D004906 8.0e-19 101.7 104 46.2
HPP92_012910 Vanilla planifolia HOM05D003919 ORTHO05D004906 8.8e-18 98.2 97 44.3
GSVIVG01012339001 Vitis vinifera HOM05D003353 ORTHO05D003751 1.1e-12 81.3 128 39.8
SEGI_09016 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 7.2e-12 78.6 80 52.5
Psat4g139360 Pisum sativum HOM05D007669 ORTHO05D009624 3.6e-11 76.3 80 43.8
FAN28G0606 Fragaria x ananassa HOM05D001114 ORTHO05D000940 4.1e-07 62.8 94 30.9
Lsat_1_v5_gn_9_102121 Lactuca sativa HOM05D000669 ORTHO05D000679 1.2e-06 61.2 69 40.6
Lalb_Chr01g0013021 Lupinus albus HOM05D003919 ORTHO05D004906 2.0e-06 60.5 67 44.8
Solyc02g014180.2 Solanum lycopersicum HOM05D003919 ORTHO05D004906 4.5e-06 59.3 220 24.5


User provided reference genes

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