Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_11500 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 1.0e-169 600.1 338 100.0
SEGI_01207 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 2.1e-130 469.5 313 88.2
TAR369G0596 Trochodendron aralioides HOM05D004552 ORTHO05D005501 6.1e-53 212.2 344 45.1
MBI18_g25517_MAGBIO Magnolia biondii HOM05D004552 ORTHO05D005501 4.3e-51 206.1 306 49.3
ATR0950G002 Amborella trichopoda HOM05D004552 ORTHO05D005501 6.3e-50 202.2 345 46.7
Nn1g07079 Nelumbo nucifera HOM05D004552 ORTHO05D005501 3.1e-49 199.9 345 43.2
Peaxi162Scf00569g00015 Petunia axillaris HOM05D004552 ORTHO05D005501 5.3e-49 199.1 345 44.1
Lj3g0026232 Lotus japonicus HOM05D004552 ORTHO05D005501 2.0e-48 197.2 319 43.6
Lj5g0019559 Lotus japonicus HOM05D004552 ORTHO05D005501 2.0e-48 197.2 319 43.6
Nitab4.5_0006780g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 3.4e-48 196.4 324 46.9
Mapoly0007s0084 Marchantia polymorpha HOM05D004552 ORTHO05D005501 1.0e-47 194.9 325 46.2
Sopen02g031920 Solanum pennellii HOM05D004552 ORTHO05D005501 1.0e-47 194.9 342 44.2
Lj4g0012826 Lotus japonicus HOM05D004552 ORTHO05D005501 1.7e-47 194.1 319 43.3
Nitab4.5_0008076g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 2.2e-47 193.7 340 43.5
ATR0594G066 Amborella trichopoda HOM05D004552 ORTHO05D005501 3.8e-47 193.0 343 45.8
Hund08942 Selenicereus undatus HOM05D004552 ORTHO05D005501 5.0e-47 192.6 343 42.0
Glyma.08G287300 Glycine max HOM05D004552 ORTHO05D005501 1.4e-46 191.0 309 43.0
PGSC0003DMG400000510 Solanum tuberosum HOM05D004552 ORTHO05D005501 1.4e-46 191.0 343 42.9
CAN.G525.45 Capsicum annuum HOM05D004552 ORTHO05D005501 1.9e-46 190.7 339 41.3
Haze_20666 Corylus avellana HOM05D004552 ORTHO05D005501 1.9e-46 190.7 320 44.1
Nitab4.5_0001952g0150 Nicotiana tabacum HOM05D004552 ORTHO05D005501 2.5e-46 190.3 337 43.3
CAN.G206.55 Capsicum annuum HOM05D004552 ORTHO05D005501 5.5e-46 189.1 341 41.3
CiPaw.09G181100 Carya illinoinensis HOM05D004552 ORTHO05D005501 5.5e-46 189.1 319 44.5
Nitab4.5_0005206g0040 Nicotiana tabacum HOM05D004552 ORTHO05D005501 5.5e-46 189.1 338 43.2
Solyc04g014240.1 Solanum lycopersicum HOM05D004552 ORTHO05D005501 5.5e-46 189.1 331 40.5
TPR.G33503 Trifolium pratense HOM05D004552 ORTHO05D005501 5.5e-46 189.1 347 42.1
Ca_22379_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 7.2e-46 188.7 326 44.5
Sopen04g006350 Solanum pennellii HOM05D004552 ORTHO05D005501 7.2e-46 188.7 332 40.1
Medtr8g075790 Medicago truncatula HOM05D004552 ORTHO05D005501 9.4e-46 188.3 321 43.9
THA.LOC104823245 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 9.4e-46 188.3 352 40.9
arahy.Tifrunner.gnm1.ann1.CZIV0N Arachis hypogaea HOM05D004552 ORTHO05D005501 1.2e-45 188.0 321 46.4
Cfa017496 Carpinus fangiana HOM05D004552 ORTHO05D005501 1.2e-45 188.0 323 44.3
Glyma.13G067700 Glycine max HOM05D004552 ORTHO05D005501 1.2e-45 188.0 309 43.0
Medtr6g089780 Medicago truncatula HOM05D004552 ORTHO05D005501 1.2e-45 188.0 345 42.9
VMungo0251G2800 Vigna mungo HOM05D004552 ORTHO05D005501 1.2e-45 188.0 309 43.4
Ciclev10011831m.g Citrus clementina HOM05D004552 ORTHO05D005501 1.6e-45 187.6 340 40.0
Solyc02g087180.4 Solanum lycopersicum HOM05D004552 ORTHO05D005501 1.6e-45 187.6 342 43.0
arahy.Tifrunner.gnm1.ann1.LN9G9C Arachis hypogaea HOM05D004552 ORTHO05D005501 2.7e-45 186.8 321 46.4
PSO210G6420 Papaver somniferum HOM05D004552 ORTHO05D005501 2.7e-45 186.8 337 40.4
arahy.Tifrunner.gnm1.ann1.URH0Q0 Arachis hypogaea HOM05D004552 ORTHO05D005501 3.6e-45 186.4 321 46.1
Gohir.D03G102900 Gossypium hirsutum HOM05D004552 ORTHO05D005501 3.6e-45 186.4 309 43.0
Gorai.003G108400 Gossypium raimondii HOM05D004552 ORTHO05D005501 4.6e-45 186.0 309 43.0
arahy.Tifrunner.gnm1.ann1.6MTV2V Arachis hypogaea HOM05D004552 ORTHO05D005501 7.9e-45 185.3 321 46.1
Glyma.06G188800 Glycine max HOM05D004552 ORTHO05D005501 7.9e-45 185.3 309 42.7
Gohir.A03G063400 Gossypium hirsutum HOM05D004552 ORTHO05D005501 1.0e-44 184.9 317 44.5
Sp6g39730 Schrenkiella parvula HOM05D004552 ORTHO05D005501 1.0e-44 184.9 351 38.7
PGR004G2024 Punica granatum HOM05D004552 ORTHO05D005501 1.8e-44 184.1 347 42.4
CDE04G3741 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 3.0e-44 183.3 318 41.8
A10p32880 Brassica napus HOM05D004552 ORTHO05D005501 3.9e-44 183.0 343 41.7
Lalb_Chr05g0229841 Lupinus albus HOM05D004552 ORTHO05D005501 3.9e-44 183.0 232 46.1
Phvul.003G261400 Phaseolus vulgaris HOM05D004552 ORTHO05D005501 3.9e-44 183.0 310 43.2
QL07p045485 Quercus lobata HOM05D004552 ORTHO05D005501 3.9e-44 183.0 321 41.4
Thecc.05G052700 Theobroma cacao HOM05D004552 ORTHO05D005501 3.9e-44 183.0 349 41.3
Dinv37242 Davidia involucrata HOM05D004552 ORTHO05D005501 8.8e-44 181.8 341 41.9
Manes.08G002200 Manihot esculenta HOM05D004552 ORTHO05D005501 8.8e-44 181.8 327 44.0
Manes.09G079900 Manihot esculenta HOM05D004552 ORTHO05D005501 8.8e-44 181.8 312 42.0
arahy.Tifrunner.gnm1.ann1.52IM1F Arachis hypogaea HOM05D004552 ORTHO05D005501 1.1e-43 181.4 307 46.3
Ca_19605_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 1.1e-43 181.4 320 42.2
Duzib106G1297 Durio zibethinus HOM05D004552 ORTHO05D005501 1.5e-43 181.0 342 40.1
Pp3c14_11490 Physcomitrium patens HOM05D004552 ORTHO05D005501 1.5e-43 181.0 309 42.1
Actinidia19722 Actinidia chinensis HOM05D004552 ORTHO05D005501 2.0e-43 180.6 320 42.8
Aa31LG1G22060 Aethionema arabicum HOM05D004552 ORTHO05D005501 2.0e-43 180.6 332 42.8
AT5G02850 Arabidopsis thaliana HOM05D004552 ORTHO05D005501 2.0e-43 180.6 256 42.2
COL.COLO4_27097 Corchorus olitorius HOM05D004552 ORTHO05D005501 2.0e-43 180.6 348 42.2
PSO832G0086 Papaver somniferum HOM05D004552 ORTHO05D005501 2.0e-43 180.6 338 39.3
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 3.3e-43 179.9 328 39.6
Thhalv10013588m.g Eutrema salsugineum HOM05D004552 ORTHO05D005501 3.3e-43 179.9 358 38.5
Manes.09G080009 Manihot esculenta HOM05D004552 ORTHO05D005501 3.3e-43 179.9 312 41.7
Aqoxy4G02198 Aquilegia oxysepala HOM05D004552 ORTHO05D005501 4.4e-43 179.5 358 41.6
EL10Ac7g16819 Beta vulgaris HOM05D004552 ORTHO05D005501 4.4e-43 179.5 342 39.2
AUR62025361 Chenopodium quinoa HOM05D004552 ORTHO05D005501 4.4e-43 179.5 344 39.5
HanXRQChr05g0156781 Helianthus annuus HOM05D004552 ORTHO05D005501 5.7e-43 179.1 329 38.9
Lj6g0002066 Lotus japonicus HOM05D004552 ORTHO05D005501 5.7e-43 179.1 319 40.4
Sc07g0006230 Simmondsia chinensis HOM05D004552 ORTHO05D005501 7.4e-43 178.7 345 42.3
ClCG04G008790 Citrullus lanatus HOM05D004552 ORTHO05D005501 9.7e-43 178.3 319 40.4
FvH4_7g16920 Fragaria vesca HOM05D004552 ORTHO05D005501 9.7e-43 178.3 326 43.3
FAN03G3426 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.3e-42 177.9 327 43.1
CARHR210480 Cardamine hirsuta HOM05D004552 ORTHO05D005501 2.2e-42 177.2 351 38.7
FAN01G0370 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.2e-42 177.2 326 43.3
Rhsim10G0168100 Rhododendron simsii HOM05D004552 ORTHO05D005501 2.2e-42 177.2 335 40.9
AUR62028362 Chenopodium quinoa HOM05D004552 ORTHO05D005501 2.8e-42 176.8 347 40.9
Rhsim11G0041500 Rhododendron simsii HOM05D004552 ORTHO05D005501 2.8e-42 176.8 335 40.6
C09p73810 Brassica napus HOM05D004552 ORTHO05D005501 3.7e-42 176.4 337 40.9
BolC9t60115H Brassica oleracea HOM05D004552 ORTHO05D005501 3.7e-42 176.4 337 40.9
Lsat_1_v5_gn_5_8941 Lactuca sativa HOM05D004552 ORTHO05D005501 3.7e-42 176.4 322 40.4
SalBow4G1233 Salvia bowleyana HOM05D004552 ORTHO05D005501 3.7e-42 176.4 322 41.3
MELO3C014263.2 Cucumis melo HOM05D004552 ORTHO05D005501 6.3e-42 175.6 296 42.2
BcaC06g32015 Brassica carinata HOM05D004552 ORTHO05D005501 8.2e-42 175.3 334 40.1
Sed0010830 Sechium edule HOM05D004552 ORTHO05D005501 8.2e-42 175.3 316 42.1
TPR.G27980 Trifolium pratense HOM05D004552 ORTHO05D005501 8.2e-42 175.3 256 43.4
TWI53G0358 Tripterygium wilfordii HOM05D004552 ORTHO05D005501 8.2e-42 175.3 336 43.5
AagrBONN_evm.TU.Sc2ySwM_362.1766 Anthoceros agrestis HOM05D004552 ORTHO05D005501 1.1e-41 174.9 340 40.6
ClCG10G016170 Citrullus lanatus HOM05D004552 ORTHO05D005501 1.1e-41 174.9 235 43.8
RcHm_v2.0_Chr1g0360161 Rosa chinensis HOM05D004552 ORTHO05D005501 1.1e-41 174.9 322 41.3
Ah.14g084480 Amaranthus hybridus HOM05D004552 ORTHO05D005501 1.4e-41 174.5 339 40.7
Prupe.2G197600 Prunus persica HOM05D004552 ORTHO05D005501 1.4e-41 174.5 331 39.9
Os09g0540500 Oryza sativa ssp. japonica HOM05D004552 ORTHO05D005501 1.8e-41 174.1 359 35.9
Psat7g019080 Pisum sativum HOM05D004552 ORTHO05D005501 1.8e-41 174.1 365 39.5
CsaV3_4G024350 Cucumis sativus L. HOM05D004552 ORTHO05D005501 2.4e-41 173.7 295 42.0
CSS0033785 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 3.1e-41 173.3 338 39.9
Psat4g100360 Pisum sativum HOM05D004552 ORTHO05D005501 4.1e-41 172.9 349 40.1
Potri.016G084200 Populus trichocarpa HOM05D004552 ORTHO05D005501 4.1e-41 172.9 320 43.8
AL6G12120 Arabidopsis lyrata HOM05D004552 ORTHO05D005501 5.3e-41 172.6 323 39.3
FAN06G4506 Fragaria x ananassa HOM05D004552 ORTHO05D005501 5.3e-41 172.6 326 42.6
Oeu029550.1 Olea europaea HOM05D004552 ORTHO05D005501 5.3e-41 172.6 337 42.7
Sabra16G0091200 Salix brachista HOM05D004552 ORTHO05D005501 5.3e-41 172.6 322 43.5
MSTRG.16520 Avicennia marina HOM05D004552 ORTHO05D005501 6.9e-41 172.2 298 44.3
Carub.0006s0165 Capsella rubella HOM05D004552 ORTHO05D005501 6.9e-41 172.2 326 38.7
DCAR_009290 Daucus carota HOM05D004552 ORTHO05D005501 6.9e-41 172.2 353 41.6
Lj6g0014683 Lotus japonicus HOM05D004552 ORTHO05D005501 1.5e-40 171.0 234 43.2
DCAR_002493 Daucus carota HOM05D004552 ORTHO05D005501 2.0e-40 170.6 309 44.7
Atru.chr8.2543 Acer truncatum HOM05D004552 ORTHO05D005501 5.9e-40 169.1 320 39.4
RcHm_v2.0_Chr1g0361081 Rosa chinensis HOM05D004552 ORTHO05D005501 7.7e-40 168.7 343 41.1
Migut.K00511 Erythranthe guttata HOM05D004552 ORTHO05D005501 1.0e-39 168.3 315 39.4
FAN06G3324 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.0e-39 168.3 302 43.4
Rhsim11G0041800 Rhododendron simsii HOM05D004552 ORTHO05D005501 1.7e-39 167.5 334 39.8
FAN06G0991 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.2e-39 167.2 321 41.7
FvH4_7g17650 Fragaria vesca HOM05D004552 ORTHO05D005501 8.5e-39 165.2 327 41.9
SGA_v2.0_scaffold94G28661 Striga asiatica HOM05D004552 ORTHO05D005501 1.4e-38 164.5 344 40.4
Cc00_g23990 Coffea canephora HOM05D004552 ORTHO05D005501 3.2e-38 163.3 323 42.7
Cc03_g15870 Coffea canephora HOM05D004552 ORTHO05D005501 3.2e-38 163.3 321 43.3
vmacro04719 Vaccinium macrocarpon HOM05D004552 ORTHO05D005501 3.2e-38 163.3 258 41.9
HPP92_012944 Vanilla planifolia HOM05D004552 ORTHO05D005501 5.5e-38 162.5 244 40.2
Oeu026072.1 Olea europaea HOM05D004552 ORTHO05D005501 1.2e-37 161.4 336 41.1
PSO675G1725 Papaver somniferum HOM05D004552 ORTHO05D005501 1.6e-37 161.0 307 37.8
unitig_899.g15236 Utricularia gibba HOM05D004552 ORTHO05D005501 2.7e-37 160.2 326 39.6
SGA_v2.0_scaffold204G41624 Striga asiatica HOM05D004552 ORTHO05D005501 4.7e-37 159.5 344 39.0
FAN03G1811 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.0e-36 158.3 301 44.5
CANSAT56G3582 Cannabis sativa HOM05D004552 ORTHO05D005501 5.2e-36 156.0 247 38.5
SHI12593 Sapria himalayana HOM05D004552 ORTHO05D005501 5.2e-36 156.0 316 38.9
Lj6g0013650 Lotus japonicus HOM05D004552 ORTHO05D005501 1.7e-34 151.0 302 38.4
CDE07G0444 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 2.4e-33 147.1 328 38.1
Eucgr.J03059 Eucalyptus grandis HOM05D004552 ORTHO05D005501 7.0e-33 145.6 300 37.3
RhsimUnG0119000 Rhododendron simsii HOM05D004552 ORTHO05D005501 2.6e-32 143.7 246 43.9
Zm00001eb103820 Zea mays HOM05D004552 ORTHO05D005501 7.7e-32 142.1 241 39.4
FvH4_6g20640 Fragaria vesca HOM05D004552 ORTHO05D005501 1.0e-28 131.7 163 47.9
FAN14G1867 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.4e-28 131.3 163 46.0
CBR_g38095 Chara braunii HOM05D004552 ORTHO05D005501 1.0e-23 115.2 248 34.3
AagrBONN_evm.TU.Sc2ySwM_344.2458 Anthoceros agrestis HOM05D004552 ORTHO05D005501 8.0e-21 105.5 264 32.6
BcaB01g05872 Brassica carinata HOM05D004552 ORTHO05D005501 2.3e-20 104.0 142 45.1
A03p00930 Brassica napus HOM05D004552 ORTHO05D005501 8.8e-20 102.1 184 36.4
C03p01200 Brassica napus HOM05D004552 ORTHO05D005501 5.7e-19 99.4 272 33.8
BolC3t12680H Brassica oleracea HOM05D004552 ORTHO05D005501 5.7e-19 99.4 272 33.8
BraA03t09475Z Brassica rapa HOM05D004552 ORTHO05D005501 1.5e-14 84.7 248 32.7
Lsat_1_v5_gn_8_95200 Lactuca sativa HOM05D004552 ORTHO05D005501 3.3e-14 83.6 102 42.2
FAN01G0473 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.0e-12 78.6 230 30.9
THA.LOC104827455 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 2.2e-10 70.9 109 36.7
CSS0042772 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 2.8e-10 70.5 131 36.6
BraA10t45325Z Brassica rapa HOM05D001414 ORTHO05D000619 1.7e-07 61.2 155 40.0
PGSC0003DMG400023633 Solanum tuberosum HOM05D004552 ORTHO05D005501 8.6e-07 58.9 97 37.1


User provided reference genes

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