Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_11251 Sequoiadendron giganteum HOM05D005429 ORTHO05D006697 2.2e-77 292.4 160 100.0
Pp3c24_19620 Physcomitrium patens HOM05D005429 ORTHO05D006697 5.8e-46 188.0 157 66.9
CDE02G4404 Ceratophyllum demersum HOM05D005429 ORTHO05D006697 3.5e-43 178.7 158 63.3
HPP92_024623 Vanilla planifolia HOM05D005429 ORTHO05D006697 4.6e-43 178.3 157 63.1
Atru.chr3.2997 Acer truncatum HOM05D005429 ORTHO05D006697 1.1e-41 173.7 152 64.5
CiPaw.05G164700 Carya illinoinensis HOM05D005429 ORTHO05D006697 4.3e-41 171.8 125 68.0
ClCG11G011870 Citrullus lanatus HOM05D005429 ORTHO05D006697 7.3e-41 171.0 159 57.9
CsaV3_1G046300 Cucumis sativus L. HOM05D005429 ORTHO05D006697 9.6e-41 170.6 159 57.9
Ciclev10022715m.g Citrus clementina HOM05D005429 ORTHO05D006697 1.2e-40 170.2 138 65.2
Eucgr.C03287 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.6e-40 169.9 121 70.2
Eucgr.F00079 Eucalyptus grandis HOM05D005429 ORTHO05D006697 2.1e-40 169.5 121 70.2
Prupe.7G260300 Prunus persica HOM05D005429 ORTHO05D006697 2.8e-40 169.1 125 68.0
Rhsim03G0256400 Rhododendron simsii HOM05D005429 ORTHO05D006697 2.8e-40 169.1 124 69.4
Rhsim10G0195600 Rhododendron simsii HOM05D005429 ORTHO05D006697 2.8e-40 169.1 124 69.4
vmacro06089 Vaccinium macrocarpon HOM05D005429 ORTHO05D006697 2.8e-40 169.1 122 70.5
Actinidia23548 Actinidia chinensis HOM05D005429 ORTHO05D006697 3.6e-40 168.7 123 68.3
Dinv42877 Davidia involucrata HOM05D005429 ORTHO05D006697 4.7e-40 168.3 125 70.4
Dinv43223 Davidia involucrata HOM05D005429 ORTHO05D006697 4.7e-40 168.3 125 70.4
Eucgr.C04279 Eucalyptus grandis HOM05D005429 ORTHO05D006697 4.7e-40 168.3 121 69.4
CSS0004524 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 6.2e-40 167.9 124 68.5
PSO832G0230 Papaver somniferum HOM05D005429 ORTHO05D006697 8.1e-40 167.5 156 61.5
Aqoxy3G02759 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 1.1e-39 167.2 124 69.4
AT1G16430 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 1.1e-39 167.2 124 65.3
Sed0018631 Sechium edule HOM05D005429 ORTHO05D006697 1.4e-39 166.8 121 68.6
ATR0019G018 Amborella trichopoda HOM05D005429 ORTHO05D006697 1.8e-39 166.4 157 60.5
Cfa010706 Carpinus fangiana HOM05D005429 ORTHO05D006697 1.8e-39 166.4 124 66.9
PSO339G4006 Papaver somniferum HOM05D005429 ORTHO05D006697 1.8e-39 166.4 156 60.9
Nn4g23117 Nelumbo nucifera HOM05D005429 ORTHO05D006697 2.4e-39 166.0 123 69.1
PSO210G6955 Papaver somniferum HOM05D005429 ORTHO05D006697 2.4e-39 166.0 144 61.8
Potri.008G080700 Populus trichocarpa HOM05D005429 ORTHO05D006697 2.4e-39 166.0 125 66.4
PGR083G0776 Punica granatum HOM05D005429 ORTHO05D006697 2.4e-39 166.0 147 63.3
TAR624G1317 Trochodendron aralioides HOM05D005429 ORTHO05D006697 2.4e-39 166.0 157 61.1
GSVIVG01036692001 Vitis vinifera HOM05D005429 ORTHO05D006697 2.4e-39 166.0 125 68.0
CARHR016900 Cardamine hirsuta HOM05D005429 ORTHO05D006697 3.1e-39 165.6 132 62.9
Duzib116G0688 Durio zibethinus HOM05D005429 ORTHO05D006697 3.1e-39 165.6 123 67.5
MELO3C021751.2 Cucumis melo HOM05D005429 ORTHO05D006697 5.3e-39 164.9 159 56.0
Gohir.A02G061000 Gossypium hirsutum HOM05D005429 ORTHO05D006697 5.3e-39 164.9 122 67.2
Nitab4.5_0009812g0020 Nicotiana tabacum HOM05D005429 ORTHO05D006697 5.3e-39 164.9 123 69.1
THA.LOC104812397 Tarenaya hassleriana HOM05D005429 ORTHO05D006697 5.3e-39 164.9 124 64.5
Gorai.005G075400 Gossypium raimondii HOM05D005429 ORTHO05D006697 9.0e-39 164.1 123 65.9
Thecc.05G251100 Theobroma cacao HOM05D005429 ORTHO05D006697 9.0e-39 164.1 123 67.5
AL1G28560 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 1.2e-38 163.7 123 65.0
Nitab4.5_0000548g0210 Nicotiana tabacum HOM05D005429 ORTHO05D006697 1.2e-38 163.7 123 69.1
Sp1g14580 Schrenkiella parvula HOM05D005429 ORTHO05D006697 1.2e-38 163.7 127 63.8
Gohir.D02G066500 Gossypium hirsutum HOM05D005429 ORTHO05D006697 1.5e-38 163.3 121 67.8
Lj7A456T20 Lonicera japonica HOM05D005429 ORTHO05D006697 1.5e-38 163.3 145 60.7
CSS0015948 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 2.0e-38 162.9 121 67.8
CSS0034504 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 2.0e-38 162.9 121 67.8
COL.COLO4_05834 Corchorus olitorius HOM05D005429 ORTHO05D006697 2.0e-38 162.9 121 67.8
QL11p022585 Quercus lobata HOM05D005429 ORTHO05D006697 2.0e-38 162.9 125 64.8
Carub.0001s0730 Capsella rubella HOM05D005429 ORTHO05D006697 2.6e-38 162.5 123 63.4
Lsat_1_v5_gn_2_59100 Lactuca sativa HOM05D005429 ORTHO05D006697 2.6e-38 162.5 123 66.7
TWI18G1141 Tripterygium wilfordii HOM05D005429 ORTHO05D006697 3.4e-38 162.2 124 66.9
Aa31LG7G970 Aethionema arabicum HOM05D005429 ORTHO05D006697 4.4e-38 161.8 125 64.0
Medtr2g062860 Medicago truncatula HOM05D005429 ORTHO05D006697 5.8e-38 161.4 123 68.3
Pp3c20_1390 Physcomitrium patens HOM05D005429 ORTHO05D006697 5.8e-38 161.4 125 64.8
Solyc03g083300.3 Solanum lycopersicum HOM05D005429 ORTHO05D006697 5.8e-38 161.4 123 67.5
Sopen03g023050 Solanum pennellii HOM05D005429 ORTHO05D006697 5.8e-38 161.4 123 67.5
Thecc.08G200900 Theobroma cacao HOM05D005429 ORTHO05D006697 5.8e-38 161.4 123 65.9
BcaC05g25573 Brassica carinata HOM05D005429 ORTHO05D006697 7.6e-38 161.0 127 61.4
C05p14630 Brassica napus HOM05D005429 ORTHO05D006697 7.6e-38 161.0 127 61.4
BolC5t30184H Brassica oleracea HOM05D005429 ORTHO05D006697 7.6e-38 161.0 127 61.4
Cpa.g.sc16.3 Carica papaya HOM05D005429 ORTHO05D006697 7.6e-38 161.0 127 62.2
PGSC0003DMG400009083 Solanum tuberosum HOM05D005429 ORTHO05D006697 7.6e-38 161.0 123 67.5
A06p12360 Brassica napus HOM05D005429 ORTHO05D006697 9.9e-38 160.6 127 61.4
BraA06t24400Z Brassica rapa HOM05D005429 ORTHO05D006697 1.3e-37 160.2 123 61.8
PSO384G3609 Papaver somniferum HOM05D005429 ORTHO05D006697 1.3e-37 160.2 156 59.0
Cc02_g22920 Coffea canephora HOM05D005429 ORTHO05D006697 1.7e-37 159.8 157 58.6
Ca_03324_v3 Cicer arietinum L. HOM05D005429 ORTHO05D006697 2.2e-37 159.5 123 67.5
Psat1g130720 Pisum sativum HOM05D005429 ORTHO05D006697 2.2e-37 159.5 124 66.1
AT1G07950 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 2.9e-37 159.1 123 61.8
Lalb_Chr01g0015641 Lupinus albus HOM05D005429 ORTHO05D006697 2.9e-37 159.1 124 66.9
Sabra08G0060000 Salix brachista HOM05D005429 ORTHO05D006697 4.9e-37 158.3 123 65.9
ECA238G3108 Erigeron canadensis HOM05D005429 ORTHO05D006697 6.4e-37 157.9 157 57.3
Manes.03G077300 Manihot esculenta HOM05D005429 ORTHO05D006697 6.4e-37 157.9 123 65.0
AL1G18280 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 8.4e-37 157.5 123 61.8
Dinv44073 Davidia involucrata HOM05D005429 ORTHO05D006697 1.9e-36 156.4 159 58.5
HanXRQChr14g0437971 Helianthus annuus HOM05D005429 ORTHO05D006697 1.9e-36 156.4 123 63.4
LjContig00222g0019384 Lotus japonicus HOM05D005429 ORTHO05D006697 1.9e-36 156.4 148 60.1
Phvul.005G043700 Phaseolus vulgaris HOM05D005429 ORTHO05D006697 1.9e-36 156.4 121 66.9
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 2.4e-36 156.0 123 68.3
AUR62006203 Chenopodium quinoa HOM05D005429 ORTHO05D006697 4.2e-36 155.2 120 64.2
Thhalv10008938m.g Eutrema salsugineum HOM05D005429 ORTHO05D006697 4.2e-36 155.2 134 59.7
BcaB02g06622 Brassica carinata HOM05D005429 ORTHO05D006697 5.4e-36 154.8 160 55.0
DCAR_027354 Daucus carota HOM05D005429 ORTHO05D006697 7.1e-36 154.5 121 64.5
AUR62030412 Chenopodium quinoa HOM05D005429 ORTHO05D006697 9.3e-36 154.1 120 63.3
arahy.Tifrunner.gnm1.ann1.9U3PF1 Arachis hypogaea HOM05D005429 ORTHO05D006697 1.2e-35 153.7 117 67.5
arahy.Tifrunner.gnm1.ann1.WT0EG6 Arachis hypogaea HOM05D005429 ORTHO05D006697 1.2e-35 153.7 117 67.5
FAN16G2737 Fragaria x ananassa HOM05D005429 ORTHO05D006697 1.2e-35 153.7 122 63.1
RcHm_v2.0_Chr5g0022991 Rosa chinensis HOM05D005429 ORTHO05D006697 1.2e-35 153.7 121 62.0
DCAR_014816 Daucus carota HOM05D005429 ORTHO05D006697 1.6e-35 153.3 153 57.5
Mapoly0161s0019 Marchantia polymorpha HOM05D005429 ORTHO05D006697 1.6e-35 153.3 160 58.1
AagrBONN_evm.TU.Sc2ySwM_117.1673 Anthoceros agrestis HOM05D005429 ORTHO05D006697 2.1e-35 152.9 123 65.0
Os08g0480500 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 2.1e-35 152.9 125 60.8
FAN21G1331 Fragaria x ananassa HOM05D005429 ORTHO05D006697 3.5e-35 152.1 122 62.3
VMungo1080G0054 Vigna mungo HOM05D005429 ORTHO05D006697 3.5e-35 152.1 121 65.3
FvH4_3g13800 Fragaria vesca HOM05D005429 ORTHO05D006697 4.6e-35 151.8 122 62.3
CANSAT56G3386 Cannabis sativa HOM05D005429 ORTHO05D006697 6.0e-35 151.4 124 60.5
Glyma.15G204300 Glycine max HOM05D005429 ORTHO05D006697 6.0e-35 151.4 156 56.4
SMO141G0142 Selaginella moellendorffii HOM05D005429 ORTHO05D006697 6.0e-35 151.4 122 64.8
Carub.0001s1617 Capsella rubella HOM05D005429 ORTHO05D006697 1.3e-34 150.2 123 59.3
FAN25G2434 Fragaria x ananassa HOM05D005429 ORTHO05D006697 1.3e-34 150.2 119 63.0
Glyma.08G160100 Glycine max HOM05D005429 ORTHO05D006697 1.3e-34 150.2 157 57.3
FAN11G0784 Fragaria x ananassa HOM05D005429 ORTHO05D006697 2.3e-34 149.4 120 61.7
Peaxi162Scf03254g00010 Petunia axillaris HOM05D005429 ORTHO05D006697 2.3e-34 149.4 123 66.7
MSTRG.26291 Avicennia marina HOM05D005429 ORTHO05D006697 3.0e-34 149.1 147 55.8
TPR.G39484 Trifolium pratense HOM05D005429 ORTHO05D006697 3.9e-34 148.7 124 62.1
EL10Ac5g12584 Beta vulgaris HOM05D005429 ORTHO05D006697 1.9e-33 146.4 119 60.5
unitig_749.g13420 Utricularia gibba HOM05D005429 ORTHO05D006697 2.5e-33 146.0 120 60.8
Ah.04g163250 Amaranthus hybridus HOM05D005429 ORTHO05D006697 4.3e-33 145.2 119 58.8
Migut.N01785 Erythranthe guttata HOM05D005429 ORTHO05D006697 5.6e-33 144.8 148 54.7
Sc16g0002320 Simmondsia chinensis HOM05D005429 ORTHO05D006697 9.6e-33 144.1 159 52.2
Peaxi162Scf00003g03942 Petunia axillaris HOM05D005429 ORTHO05D006697 1.6e-32 143.3 123 64.2
Zm00001eb335330 Zea mays HOM05D005429 ORTHO05D006697 2.1e-32 142.9 124 60.5
SGA_v2.0_scaffold147G36309 Striga asiatica HOM05D005429 ORTHO05D006697 8.1e-32 141.0 148 52.7
SGA_v2.0_scaffold19G08578 Striga asiatica HOM05D005429 ORTHO05D006697 8.1e-32 141.0 116 60.3
Hund11041 Selenicereus undatus HOM05D005429 ORTHO05D006697 3.1e-31 139.0 156 51.3
Os01g0132700 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 2.6e-30 136.0 141 51.8
unitig_26.g9672 Utricularia gibba HOM05D005429 ORTHO05D006697 4.5e-30 135.2 147 51.0
Hma1.2p1_0817F.1_g223090 Hydrangea macrophylla HOM05D005429 ORTHO05D006697 3.8e-29 132.1 145 55.2
QL02p100061 Quercus lobata HOM05D005429 ORTHO05D006697 1.4e-28 130.2 105 64.8
QL04p071374 Quercus lobata HOM05D005429 ORTHO05D006697 1.4e-28 130.2 101 65.3
Haze_03266 Corylus avellana HOM05D005429 ORTHO05D006697 3.2e-28 129.0 143 53.1
Peaxi162Scf00003g04025 Petunia axillaris HOM05D005429 ORTHO05D006697 5.4e-28 128.3 95 70.5
Eucgr.C04273 Eucalyptus grandis HOM05D005429 ORTHO05D006697 7.1e-28 127.9 97 63.9
Haze_03271 Corylus avellana HOM05D005429 ORTHO05D001402 1.6e-27 126.7 99 65.7
MD02G1009700 Malus domestica HOM05D005429 ORTHO05D006697 3.5e-27 125.6 125 52.0
Oeu051694.1 Olea europaea HOM05D005429 ORTHO05D006697 3.0e-26 122.5 96 66.7
Peaxi162Scf03393g00016 Petunia axillaris HOM05D005429 ORTHO05D006697 8.7e-26 120.9 88 71.6
Aqoxy3G02314 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 4.5e-22 108.6 83 68.7
CAN.G1618.6 Capsicum annuum HOM05D005429 ORTHO05D006697 2.3e-18 96.3 109 51.4
CAN.G584.55 Capsicum annuum HOM05D005429 ORTHO05D006697 2.3e-18 96.3 109 51.4
Eucgr.L02967 Eucalyptus grandis HOM05D005429 ORTHO05D006697 8.2e-16 87.8 101 49.5
Oeu050474.1 Olea europaea HOM05D005429 ORTHO05D006697 6.9e-15 84.7 77 57.1
Eucgr.C04269 Eucalyptus grandis HOM05D005429 ORTHO05D006697 4.5e-14 82.0 95 51.6
Zm00001eb228470 Zea mays HOM05D005429 ORTHO05D006697 1.3e-13 80.5 62 64.5
Peaxi162Scf03393g00018 Petunia axillaris HOM05D005429 ORTHO05D006697 2.9e-13 79.3 64 60.9
SGA_v2.0_scaffold19G08613 Striga asiatica HOM05D005429 ORTHO05D006697 5.7e-09 65.1 71 56.3
SGA_v2.0_scaffold19G08607 Striga asiatica HOM05D005429 ORTHO05D006697 9.7e-09 64.3 71 56.3
SGA_v2.0_scaffold711G53500 Striga asiatica HOM05D005429 ORTHO05D006697 2.8e-08 62.8 136 39.0


User provided reference genes

Program Settings