Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_10811 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 1.4e-84 316.2 158 100.0
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 1.7e-10 70.1 44 70.5
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 3.9e-10 68.9 44 70.5
CDE05G1624 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 5.1e-10 68.6 47 66.0
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 5.1e-10 68.6 53 60.4
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 6.6e-10 68.2 44 68.2
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 6.6e-10 68.2 44 68.2
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 8.6e-10 67.8 49 61.2
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 8.6e-10 67.8 44 72.7
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 8.6e-10 67.8 44 68.2
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 1.1e-09 67.4 44 65.9
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 1.1e-09 67.4 49 61.2
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 1.1e-09 67.4 44 65.9
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 1.1e-09 67.4 44 63.6
Atru.chr2.402 Acer truncatum HOM05D004082 ORTHO05D004729 1.5e-09 67.0 44 65.9
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 1.5e-09 67.0 44 68.2
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 1.5e-09 67.0 44 65.9
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 2.5e-09 66.2 44 63.6
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 2.5e-09 66.2 65 53.8
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 2.5e-09 66.2 49 61.2
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 2.5e-09 66.2 49 61.2
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 2.5e-09 66.2 44 65.9
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 3.3e-09 65.9 42 69.0
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 3.3e-09 65.9 44 65.9
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 3.3e-09 65.9 49 61.2
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 3.3e-09 65.9 42 69.0
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 3.3e-09 65.9 44 63.6
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 4.3e-09 65.5 44 63.6
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 4.3e-09 65.5 49 61.2
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 5.6e-09 65.1 44 65.9
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 5.6e-09 65.1 44 65.9
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 5.6e-09 65.1 44 63.6
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 5.6e-09 65.1 44 63.6
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 5.6e-09 65.1 44 68.2
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 5.6e-09 65.1 44 63.6
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 7.3e-09 64.7 45 68.9
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 7.3e-09 64.7 49 61.2
Nitab4.5_0003227g0030 Nicotiana tabacum HOM05D004082 ORTHO05D004729 7.3e-09 64.7 41 65.9
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 9.5e-09 64.3 44 61.4
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 9.5e-09 64.3 44 63.6
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 1.2e-08 63.9 44 65.9
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 1.2e-08 63.9 50 62.0
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 1.2e-08 63.9 44 68.2
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 1.2e-08 63.9 44 68.2
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 1.6e-08 63.5 49 57.1
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 1.6e-08 63.5 54 53.7
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 2.1e-08 63.2 47 61.7
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 2.1e-08 63.2 44 63.6
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 2.1e-08 63.2 45 66.7
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 2.1e-08 63.2 44 61.4
Gorai.013G124200 Gossypium raimondii HOM05D004082 ORTHO05D004729 2.1e-08 63.2 44 61.4
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 2.1e-08 63.2 50 58.0
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 2.8e-08 62.8 44 63.6
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 3.6e-08 62.4 44 63.6
Hma1.2p1_0928F.1_g237760 Hydrangea macrophylla HOM05D004082 ORTHO05D004729 3.6e-08 62.4 42 66.7
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 4.7e-08 62.0 45 66.7
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 4.7e-08 62.0 45 66.7
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 4.7e-08 62.0 45 66.7
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 4.7e-08 62.0 45 66.7
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 4.7e-08 62.0 45 64.4
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 4.7e-08 62.0 45 64.4
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 4.7e-08 62.0 44 65.9
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 6.2e-08 61.6 43 67.4
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 6.2e-08 61.6 44 61.4
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 8.1e-08 61.2 45 64.4
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 8.1e-08 61.2 44 65.9
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 8.1e-08 61.2 44 68.2
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 1.1e-07 60.8 44 63.6
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 1.1e-07 60.8 44 65.9
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 1.1e-07 60.8 44 63.6
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 1.4e-07 60.5 45 64.4
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 1.4e-07 60.5 47 61.7
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 1.4e-07 60.5 44 61.4
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 1.4e-07 60.5 46 60.9
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 1.4e-07 60.5 46 60.9
MBI17_g12862_MAGBIO Magnolia biondii HOM05D004082 ORTHO05D004729 1.8e-07 60.1 44 59.1
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 1.8e-07 60.1 45 66.7
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 1.8e-07 60.1 46 60.9
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 1.8e-07 60.1 44 63.6
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 2.3e-07 59.7 45 64.4
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 3.1e-07 59.3 45 64.4
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 3.1e-07 59.3 44 59.1
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 3.1e-07 59.3 44 59.1
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 5.2e-07 58.5 44 61.4
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 6.8e-07 58.2 46 63.0
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 6.8e-07 58.2 46 58.7
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 6.8e-07 58.2 46 58.7
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 6.8e-07 58.2 44 54.5
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 6.8e-07 58.2 44 61.4
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 8.9e-07 57.8 44 56.8
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 1.2e-06 57.4 46 65.2
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 1.2e-06 57.4 45 57.8
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 1.2e-06 57.4 45 57.8
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 1.2e-06 57.4 45 57.8
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 1.2e-06 57.4 45 57.8
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 1.5e-06 57.0 44 54.5
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 1.5e-06 57.0 45 66.7
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 1.5e-06 57.0 45 57.8
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 2.0e-06 56.6 53 58.5
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 2.0e-06 56.6 47 57.4
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 2.6e-06 56.2 45 64.4
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 2.6e-06 56.2 47 57.4
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 3.4e-06 55.8 44 56.8
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 4.4e-06 55.5 45 57.8
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 7.6e-06 54.7 55 58.2
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 7.6e-06 54.7 55 58.2
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 7.6e-06 54.7 46 60.9
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 7.6e-06 54.7 46 60.9
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 9.9e-06 54.3 45 62.2
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 9.9e-06 54.3 45 60.0


User provided reference genes

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