Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_10720 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 1.2e-294 1015.8 508 100.0
Nn7g38041 Nelumbo nucifera HOM05D004333 ORTHO05D005363 3.1e-85 320.1 493 38.5
ATR0697G293 Amborella trichopoda HOM05D004333 ORTHO05D005363 1.9e-82 310.8 474 39.0
MBI06_g06689_MAGBIO Magnolia biondii HOM05D004333 ORTHO05D005363 4.2e-82 309.7 474 36.9
TAR633G0098 Trochodendron aralioides HOM05D004333 ORTHO05D005363 4.6e-81 306.2 476 36.6
PSO063G3257 Papaver somniferum HOM05D004333 ORTHO05D005363 2.4e-77 293.9 474 38.6
Aqoxy5G04259 Aquilegia oxysepala HOM05D004333 ORTHO05D005363 2.6e-76 290.4 478 35.4
Dinv32109 Davidia involucrata HOM05D004333 ORTHO05D005363 1.1e-74 285.0 481 37.2
Actinidia08674 Actinidia chinensis HOM05D004333 ORTHO05D005363 1.0e-72 278.5 476 34.7
Ciclev10000006m.g Citrus clementina HOM05D004333 ORTHO05D005363 1.0e-72 278.5 481 34.5
Lj1C1024G7 Lonicera japonica HOM05D004333 ORTHO05D005363 1.4e-72 278.1 478 35.4
MSTRG.27005 Avicennia marina HOM05D004333 ORTHO05D005363 1.5e-71 274.6 495 35.6
vmacro06413 Vaccinium macrocarpon HOM05D004333 ORTHO05D005363 2.5e-71 273.9 474 33.8
Thecc.03G204400 Theobroma cacao HOM05D004333 ORTHO05D005363 3.3e-71 273.5 482 35.9
Gorai.006G202800 Gossypium raimondii HOM05D004333 ORTHO05D005363 7.4e-71 272.3 479 35.7
SGA_v2.0_scaffold18G08437 Striga asiatica HOM05D004333 ORTHO05D005363 1.3e-70 271.6 475 35.2
Gohir.A12G247800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 6.3e-70 269.2 480 36.2
C07p43390 Brassica napus HOM05D004333 ORTHO05D005363 2.4e-69 267.3 474 32.9
BolC7t44866H Brassica oleracea HOM05D004333 ORTHO05D005363 2.4e-69 267.3 474 32.9
MELO3C010103.2 Cucumis melo HOM05D004333 ORTHO05D005363 2.4e-69 267.3 477 34.6
Cfa016195 Carpinus fangiana HOM05D004333 ORTHO05D005363 4.1e-69 266.5 486 34.2
BraA06t26437Z Brassica rapa HOM05D004333 ORTHO05D005363 5.3e-69 266.2 474 32.9
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 9.1e-69 265.4 476 34.5
Gohir.A09G185800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 1.5e-68 264.6 477 34.8
Gohir.D12G248500 Gossypium hirsutum HOM05D004333 ORTHO05D005363 2.0e-68 264.2 480 35.8
GSVIVG01038603001 Vitis vinifera HOM05D004333 ORTHO05D005363 2.0e-68 264.2 474 34.2
CARHR189090 Cardamine hirsuta HOM05D004333 ORTHO05D005363 2.6e-68 263.8 480 31.7
TWI39G1232 Tripterygium wilfordii HOM05D004333 ORTHO05D005363 2.6e-68 263.8 482 33.4
Sabra15G0006500 Salix brachista HOM05D004333 ORTHO05D005363 3.4e-68 263.5 486 35.4
Gorai.008G266500 Gossypium raimondii HOM05D004333 ORTHO05D005363 4.5e-68 263.1 480 35.6
ClCG03G011440 Citrullus lanatus HOM05D004333 ORTHO05D005363 5.9e-68 262.7 478 34.1
Manes.01G037200 Manihot esculenta HOM05D004333 ORTHO05D005363 5.9e-68 262.7 482 32.8
BcaNung01227 Brassica carinata HOM05D004333 ORTHO05D005363 7.7e-68 262.3 474 33.1
Atru.chr12.2311 Acer truncatum HOM05D004333 ORTHO05D005363 1.0e-67 261.9 482 35.1
A06p35170 Brassica napus HOM05D004333 ORTHO05D005363 1.3e-67 261.5 474 32.7
Migut.F00177 Erythranthe guttata HOM05D004333 ORTHO05D005363 1.3e-67 261.5 489 32.5
Eucgr.D00250 Eucalyptus grandis HOM05D004333 ORTHO05D005363 1.3e-67 261.5 475 34.7
Thhalv10003502m.g Eutrema salsugineum HOM05D004333 ORTHO05D005363 1.7e-67 261.2 471 32.7
AUR62010404 Chenopodium quinoa HOM05D004333 ORTHO05D005363 2.2e-67 260.8 487 32.9
Potri.012G020000 Populus trichocarpa HOM05D004333 ORTHO05D005363 2.9e-67 260.4 479 35.7
Oeu001936.1 Olea europaea HOM05D004333 ORTHO05D005363 3.8e-67 260.0 479 34.4
FAN06G4186 Fragaria x ananassa HOM05D004333 ORTHO05D005363 5.0e-67 259.6 483 34.6
AUR62016813 Chenopodium quinoa HOM05D004333 ORTHO05D005363 8.5e-67 258.8 485 34.8
MD01G1225300 Malus domestica HOM05D004333 ORTHO05D005363 8.5e-67 258.8 475 34.7
Sp2g22970 Schrenkiella parvula HOM05D004333 ORTHO05D005363 8.5e-67 258.8 471 32.1
ECA232G2446 Erigeron canadensis HOM05D004333 ORTHO05D005363 1.4e-66 258.1 475 31.8
RcHm_v2.0_Chr1g0381961 Rosa chinensis HOM05D004333 ORTHO05D005363 1.9e-66 257.7 488 33.2
FAN10G1078 Fragaria x ananassa HOM05D004333 ORTHO05D005363 2.5e-66 257.3 483 34.2
CsaV3_1G044960 Cucumis sativus L. HOM05D004333 ORTHO05D005363 3.2e-66 256.9 477 34.0
Prupe.2G315300 Prunus persica HOM05D004333 ORTHO05D005363 3.2e-66 256.9 475 32.8
FvH4_7g32380 Fragaria vesca HOM05D004333 ORTHO05D005363 4.2e-66 256.5 484 33.9
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 4.2e-66 256.5 483 33.7
FAN01G1860 Fragaria x ananassa HOM05D004333 ORTHO05D005363 5.5e-66 256.1 483 34.2
Ah.01g018970 Amaranthus hybridus HOM05D004333 ORTHO05D005363 7.2e-66 255.8 487 33.1
Potri.015G008500 Populus trichocarpa HOM05D004333 ORTHO05D005363 9.4e-66 255.4 484 35.3
Sed0018682 Sechium edule HOM05D004333 ORTHO05D005363 9.4e-66 255.4 479 34.4
FAN10G0319 Fragaria x ananassa HOM05D004333 ORTHO05D005363 1.2e-65 255.0 483 34.2
THA.LOC104798907 Tarenaya hassleriana HOM05D004333 ORTHO05D005363 1.2e-65 255.0 477 32.3
QL11p010725 Quercus lobata HOM05D004333 ORTHO05D005363 2.1e-65 254.2 483 34.8
FAN03G1314 Fragaria x ananassa HOM05D004333 ORTHO05D005363 2.7e-65 253.8 483 34.2
AL6G35880 Arabidopsis lyrata HOM05D004333 ORTHO05D005363 3.6e-65 253.4 475 32.2
MD07G1295800 Malus domestica HOM05D004333 ORTHO05D005363 2.3e-64 250.8 479 34.4
AT5G24350 Arabidopsis thaliana HOM05D004333 ORTHO05D005363 3.0e-64 250.4 475 31.6
EL10Ac9g21652 Beta vulgaris HOM05D004333 ORTHO05D005363 3.0e-64 250.4 474 32.7
Sabra12G0012900 Salix brachista HOM05D004333 ORTHO05D005363 8.8e-64 248.8 485 34.8
CiPaw.05G200800 Carya illinoinensis HOM05D004333 ORTHO05D005363 1.5e-63 248.1 482 34.9
Cc02_g01170 Coffea canephora HOM05D004333 ORTHO05D005363 1.5e-63 248.1 484 32.4
Carub.0006s2217 Capsella rubella HOM05D004333 ORTHO05D005363 2.0e-63 247.7 475 31.4
Sopen03g022440 Solanum pennellii HOM05D004333 ORTHO05D005363 2.0e-63 247.7 482 33.8
Aa31LG11G3970 Aethionema arabicum HOM05D004333 ORTHO05D005363 3.3e-63 246.9 474 31.4
Hund21026 Selenicereus undatus HOM05D004333 ORTHO05D005363 3.3e-63 246.9 491 31.0
Aa31LG11G3630 Aethionema arabicum HOM05D004333 ORTHO05D005363 5.7e-63 246.1 471 31.8
CAN.G481.56 Capsicum annuum HOM05D004333 ORTHO05D005363 2.2e-62 244.2 484 34.1
DCAR_020346 Daucus carota HOM05D004333 ORTHO05D005363 2.2e-62 244.2 476 33.6
PGR142G3828 Punica granatum HOM05D004333 ORTHO05D005363 3.7e-62 243.4 472 32.8
arahy.Tifrunner.gnm1.ann1.SMAV3X Arachis hypogaea HOM05D004333 ORTHO05D005363 4.8e-62 243.0 478 34.9
CANSAT21G1061 Cannabis sativa HOM05D004333 ORTHO05D005363 4.8e-62 243.0 483 32.1
Medtr3g091940 Medicago truncatula HOM05D004333 ORTHO05D005363 8.2e-62 242.3 479 33.2
Nitab4.5_0010367g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.4e-61 240.7 479 33.0
TPR.G33633 Trifolium pratense HOM05D004333 ORTHO05D005363 2.4e-61 240.7 482 32.8
Ca_16734_v3 Cicer arietinum L. HOM05D004333 ORTHO05D005363 5.3e-61 239.6 476 32.4
HanXRQChr04g0107121 Helianthus annuus HOM05D004333 ORTHO05D005363 3.5e-60 236.9 487 30.4
Lsat_1_v5_gn_9_49400 Lactuca sativa HOM05D004333 ORTHO05D005363 5.9e-60 236.1 484 29.5
arahy.Tifrunner.gnm1.ann1.F5KWPZ Arachis hypogaea HOM05D004333 ORTHO05D005363 1.0e-59 235.3 478 34.5
Zm00001eb359130 Zea mays HOM05D004333 ORTHO05D005363 1.7e-59 234.6 477 30.6
Sc19g0000760 Simmondsia chinensis HOM05D004333 ORTHO05D005363 2.2e-59 234.2 481 31.4
Lalb_Chr08g0240011 Lupinus albus HOM05D004333 ORTHO05D005363 2.9e-59 233.8 486 33.1
Psat5g074840 Pisum sativum HOM05D004333 ORTHO05D005363 3.2e-58 230.3 498 31.1
Lj1g0003347 Lotus japonicus HOM05D004333 ORTHO05D005363 1.2e-57 228.4 477 33.3
Peaxi162Scf00740g00426 Petunia axillaris HOM05D004333 ORTHO05D005363 2.7e-57 227.3 473 31.1
Phvul.009G048100 Phaseolus vulgaris HOM05D004333 ORTHO05D005363 4.7e-57 226.5 478 32.0
Glyma.04G232700 Glycine max HOM05D004333 ORTHO05D005363 8.0e-57 225.7 478 31.8
Glyma.06G132300 Glycine max HOM05D004333 ORTHO05D005363 1.0e-56 225.3 478 32.6
HPP92_002817 Vanilla planifolia HOM05D004333 ORTHO05D005363 1.8e-56 224.6 476 29.8
Nitab4.5_0008197g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 5.2e-56 223.0 480 32.3
Haze_00260 Corylus avellana HOM05D004333 ORTHO05D005363 2.2e-54 217.6 444 33.1
CDE02G3740 Ceratophyllum demersum HOM05D004333 ORTHO05D005363 1.1e-53 215.3 486 31.7
VMungo1309G1648 Vigna mungo HOM05D004333 ORTHO05D005363 3.1e-53 213.8 483 30.6
CSS0041108 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 1.0e-51 208.8 476 31.3
AagrBONN_evm.TU.Sc2ySwM_362.1567 Anthoceros agrestis HOM05D004333 ORTHO05D005363 5.0e-51 206.5 512 29.9
CSS0044449 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 1.2e-49 201.8 479 29.9
SHI08286 Sapria himalayana HOM05D004333 ORTHO05D005363 1.8e-40 171.4 340 33.5
Gohir.D09G180800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 2.0e-39 167.9 217 40.6
CBR_g48777 Chara braunii HOM05D004333 ORTHO05D005363 4.9e-38 163.3 506 26.9
Actinidia34248 Actinidia chinensis HOM05D004333 ORTHO05D005363 8.6e-35 152.5 300 32.7
CAN.G481.55 Capsicum annuum HOM05D004333 ORTHO05D005363 5.6e-26 123.2 317 29.3
Mapoly0143s0007 Marchantia polymorpha HOM05D004333 ORTHO05D005363 7.5e-23 112.8 140 42.1
Psat0s2221g0080 Pisum sativum HOM05D004333 ORTHO05D005363 7.5e-23 112.8 217 32.7
MCO09G360 Micromonas commoda HOM05D004333 ORTHO05D005363 3.1e-16 90.9 244 29.5
Duzib068G0008 Durio zibethinus HOM05D004333 ORTHO05D005363 5.2e-16 90.1 180 33.3
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 2.6e-15 87.8 94 45.7
Nitab4.5_0004178g0040 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.6e-15 87.8 138 37.7
CSS0015753 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 1.7e-14 85.1 217 27.6
SMO356G0059 Selaginella moellendorffii HOM05D004333 ORTHO05D005363 2.2e-14 84.7 99 40.4
Pp3c1_3140 Physcomitrium patens HOM05D004333 ORTHO05D005363 8.3e-14 82.8 162 32.7
CSS0025528 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 1.4e-13 82.0 90 41.1
unitig_0.g2452 Utricularia gibba HOM05D004333 ORTHO05D005363 1.7e-11 75.1 420 23.8
Cre09.g415400 Chlamydomonas reinhardtii HOM05D004333 ORTHO05D005363 1.5e-10 72.0 144 29.9
SalBow4G2088 Salvia bowleyana HOM05D004333 ORTHO05D005363 2.6e-07 61.2 55 47.3


User provided reference genes

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