Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 4.8e-91 337.8 171 100.0
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 2.8e-75 285.4 167 82.0
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 2.4e-74 282.3 167 79.6
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 7.0e-74 280.8 167 80.8
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 7.0e-74 280.8 167 80.8
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 7.0e-74 280.8 167 80.8
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 9.2e-74 280.4 168 79.8
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 1.2e-73 280.0 167 80.8
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 1.6e-73 279.6 168 79.8
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 2.0e-73 279.3 168 78.6
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 2.7e-73 278.9 168 78.0
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 2.7e-73 278.9 168 79.8
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 3.5e-73 278.5 168 79.2
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 3.5e-73 278.5 167 79.0
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 3.5e-73 278.5 168 78.6
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 4.5e-73 278.1 167 79.0
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 4.5e-73 278.1 167 79.0
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 5.9e-73 277.7 167 79.6
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 1.0e-72 276.9 167 80.2
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 1.3e-72 276.6 167 78.4
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 1.3e-72 276.6 167 79.6
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 1.3e-72 276.6 167 79.0
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 1.3e-72 276.6 167 79.0
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 2.3e-72 275.8 167 77.8
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 2.3e-72 275.8 167 78.4
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 2.9e-72 275.4 168 77.4
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 3.9e-72 275.0 167 78.4
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 5.0e-72 274.6 168 78.0
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 8.6e-72 273.9 166 78.3
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 8.6e-72 273.9 167 77.2
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.1e-71 273.5 167 77.2
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 1.5e-71 273.1 168 76.2
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 1.9e-71 272.7 166 80.1
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 1.9e-71 272.7 168 76.2
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 1.9e-71 272.7 168 76.8
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 4.3e-71 271.6 166 77.7
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 4.3e-71 271.6 166 77.7
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 4.3e-71 271.6 166 77.7
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 4.3e-71 271.6 167 77.2
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 4.3e-71 271.6 166 77.7
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 5.6e-71 271.2 168 75.0
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 5.6e-71 271.2 167 77.2
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 7.3e-71 270.8 166 77.7
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 7.3e-71 270.8 168 76.2
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 7.3e-71 270.8 167 77.8
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 9.5e-71 270.4 166 78.3
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 9.5e-71 270.4 169 75.7
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 1.6e-70 269.6 167 77.8
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 1.6e-70 269.6 180 73.9
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 1.6e-70 269.6 168 77.4
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 3.6e-70 268.5 168 75.0
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 3.6e-70 268.5 166 78.3
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 6.1e-70 267.7 168 75.6
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 8.0e-70 267.3 168 74.4
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 8.0e-70 267.3 168 73.8
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 8.0e-70 267.3 168 75.0
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 8.0e-70 267.3 205 67.3
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 8.0e-70 267.3 184 72.8
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 1.0e-69 266.9 167 76.0
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 1.4e-69 266.5 166 78.3
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 1.8e-69 266.2 168 75.0
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 2.3e-69 265.8 166 76.5
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 2.3e-69 265.8 168 73.8
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 4.0e-69 265.0 167 74.9
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 5.2e-69 264.6 168 74.4
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 5.2e-69 264.6 167 77.8
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 6.8e-69 264.2 167 76.0
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 1.5e-68 263.1 166 73.5
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 2.6e-68 262.3 166 73.5
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 9.8e-68 260.4 190 69.5
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 1.3e-67 260.0 150 82.0
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 2.2e-67 259.2 167 71.9
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.2e-67 259.2 183 69.9
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 2.2e-67 259.2 149 81.9
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 2.2e-67 259.2 149 82.6
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.9e-67 258.8 183 69.9
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.9e-67 258.8 183 69.9
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 2.9e-67 258.8 149 81.2
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 6.4e-67 257.7 167 72.5
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 6.4e-67 257.7 167 71.9
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 8.3e-67 257.3 167 71.3
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 1.1e-66 256.9 167 74.9
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 1.4e-66 256.5 170 73.5
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 2.4e-66 255.8 168 69.6
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 3.2e-66 255.4 167 75.4
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 4.1e-66 255.0 167 70.7
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 4.1e-66 255.0 149 80.5
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 5.4e-66 254.6 147 82.3
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 5.4e-66 254.6 167 71.3
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 7.0e-66 254.2 168 68.5
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 9.2e-66 253.8 167 70.1
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.6e-65 253.1 167 70.7
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 1.6e-65 253.1 157 77.7
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 2.7e-65 252.3 167 70.7
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 3.5e-65 251.9 167 70.7
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 4.6e-65 251.5 167 70.7
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 6.0e-65 251.1 168 68.5
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 7.8e-65 250.8 149 80.5
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.3e-64 250.0 213 60.6
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 1.3e-64 250.0 157 77.1
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 1.7e-64 249.6 145 81.4
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 5.0e-64 248.1 194 62.9
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 5.0e-64 248.1 167 70.1
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 6.6e-64 247.7 155 76.8
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 8.6e-64 247.3 143 81.8
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 3.3e-63 245.4 148 77.7
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 4.3e-63 245.0 168 72.6
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 9.5e-63 243.8 167 69.5
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 9.5e-63 243.8 167 69.5
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 2.3e-61 239.2 152 75.7
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 5.2e-61 238.0 150 74.0
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 1.7e-59 233.0 191 63.4
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 4.9e-59 231.5 238 52.5
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 1.9e-58 229.6 165 67.3
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 3.2e-58 228.8 177 67.8
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 6.0e-57 224.6 158 70.9
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 3.0e-56 222.2 149 69.1
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 1.1e-55 220.3 159 68.6
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 1.9e-55 219.5 126 79.4
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 1.2e-54 216.9 124 79.8
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 3.6e-54 215.3 149 67.8
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 3.6e-54 215.3 158 65.8
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 8.1e-54 214.2 123 80.5
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 1.8e-53 213.0 168 64.9
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 6.8e-53 211.1 156 69.2
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 9.9e-52 207.2 125 81.6
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 1.3e-51 206.8 152 65.8
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 8.3e-51 204.1 166 63.3
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 1.9e-50 203.0 122 82.0
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 1.9e-50 203.0 137 73.0
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 2.1e-49 199.5 121 81.8
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 2.7e-49 199.1 121 81.0
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 2.7e-49 199.1 121 81.0
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 2.7e-49 199.1 166 62.7
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 6.0e-49 198.0 121 80.2
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 1.7e-48 196.4 168 59.5
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.1e-47 193.7 132 69.7
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 1.5e-47 193.4 123 78.0
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 1.9e-47 193.0 130 76.2
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 4.3e-47 191.8 161 65.8
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 4.3e-47 191.8 155 62.6
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 1.5e-44 183.3 141 66.7
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 3.3e-39 165.6 106 77.4
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 1.4e-37 160.2 90 85.6
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 4.0e-37 158.7 90 76.7
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 1.0e-32 144.1 103 68.9
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 6.6e-32 141.4 94 76.6
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 3.6e-30 135.6 83 80.7
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 1.4e-29 133.7 91 74.7
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 1.5e-28 130.2 101 63.4
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 1.8e-24 116.7 103 59.2
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.1e-23 114.0 73 79.5
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 7.4e-23 111.3 82 64.6
CSS0042444 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 2.0e-20 103.2 75 65.3
AL6G12900 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.7e-19 100.1 75 58.7
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.1e-18 97.4 74 62.2
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 2.5e-18 96.3 161 37.9
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 2.7e-17 92.8 130 40.8
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.3e-16 89.7 63 71.4
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 3.9e-16 89.0 64 67.2
Cre01.g062902 Chlamydomonas reinhardtii HOM05D004349 ORTHO05D005097 8.2e-14 81.3 159 35.2
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 1.8e-13 80.1 49 79.6
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 1.8e-13 80.1 49 79.6
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 2.2e-11 73.2 108 45.4
Rhsim04G0093100 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.9e-10 70.1 44 63.6
FAN04G2473 Fragaria x ananassa HOM05D004349 ORTHO05D005097 9.7e-07 57.8 38 60.5


User provided reference genes

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