Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_10166 Sequoiadendron giganteum HOM05D058745 ORTHO05D003483 5.6e-68 260.8 128 100.0
SEGI_25210 Sequoiadendron giganteum HOM05D058745 ORTHO05D003483 5.6e-68 260.8 128 100.0
SEGI_29837 Sequoiadendron giganteum HOM05D001734 ORTHO05D003483 1.3e-35 153.3 82 86.6
Potri.015G076650 Populus trichocarpa HOM05D001734 ORTHO05D003483 2.0e-09 66.2 74 41.9
CSS0000775 Camellia sinensis var. sinensis HOM05D001734 ORTHO05D033929 3.5e-09 65.5 75 34.7
Sabra15G0101700 Salix brachista HOM05D001734 ORTHO05D003483 3.5e-09 65.5 74 40.5
QL10p011601 Quercus lobata HOM05D001734 ORTHO05D003483 4.5e-09 65.1 74 37.8
Cfa019134 Carpinus fangiana HOM05D001734 ORTHO05D003483 5.9e-09 64.7 75 40.0
AUR62030960 Chenopodium quinoa HOM05D001734 ORTHO05D003483 7.7e-09 64.3 75 40.0
COL.COLO4_30039 Corchorus olitorius HOM05D001734 ORTHO05D003483 7.7e-09 64.3 74 37.8
Haze_07473 Corylus avellana HOM05D001734 ORTHO05D003483 1.0e-08 63.9 75 40.0
Duzib084G0583 Durio zibethinus HOM05D001734 ORTHO05D003483 2.2e-08 62.8 74 36.5
GSVIVG01007755001 Vitis vinifera HOM05D001734 ORTHO05D003483 2.2e-08 62.8 73 38.4
Ciclev10018427m.g Citrus clementina HOM05D001734 ORTHO05D003483 2.9e-08 62.4 76 36.8
Sc04g0001800 Simmondsia chinensis HOM05D001734 ORTHO05D003483 3.8e-08 62.0 74 40.5
AUR62008208 Chenopodium quinoa HOM05D001734 ORTHO05D003483 6.5e-08 61.2 74 37.8
Manes.06G105000 Manihot esculenta HOM05D001734 ORTHO05D003483 6.5e-08 61.2 74 35.1
Prupe.5G173600 Prunus persica HOM05D001734 ORTHO05D003483 6.5e-08 61.2 74 39.2
Hund02744 Selenicereus undatus HOM05D001734 ORTHO05D003483 6.5e-08 61.2 74 39.2
arahy.Tifrunner.gnm1.ann1.2D0TBT Arachis hypogaea HOM05D001734 ORTHO05D003483 8.5e-08 60.8 86 34.9
CiPaw.11G026100 Carya illinoinensis HOM05D001734 ORTHO05D003483 8.5e-08 60.8 74 33.8
PSO063G7150 Papaver somniferum HOM05D001734 ORTHO05D003483 1.1e-07 60.5 74 36.5
RcHm_v2.0_Chr6g0271131 Rosa chinensis HOM05D001734 ORTHO05D003483 1.1e-07 60.5 74 37.8
CANSAT80G1574 Cannabis sativa HOM05D001734 ORTHO05D003483 1.5e-07 60.1 74 40.5
MD06G1173700 Malus domestica HOM05D001734 ORTHO05D003483 1.5e-07 60.1 74 36.5
PSO063G0326 Papaver somniferum HOM05D001734 ORTHO05D003483 1.5e-07 60.1 74 36.5
TAR629G1256 Trochodendron aralioides HOM05D001734 ORTHO05D003483 1.5e-07 60.1 74 37.8
TWI14G0283 Tripterygium wilfordii HOM05D001734 ORTHO05D003483 1.9e-07 59.7 74 37.8
Actinidia19322 Actinidia chinensis HOM05D001734 ORTHO05D003483 2.5e-07 59.3 74 33.8
A06p27460 Brassica napus HOM05D001734 ORTHO05D003483 3.2e-07 58.9 74 36.5
C03p66700 Brassica napus HOM05D001734 ORTHO05D003483 3.2e-07 58.9 74 36.5
BraA06t25686Z Brassica rapa HOM05D001734 ORTHO05D003483 3.2e-07 58.9 74 36.5
CsaV3_1G001470 Cucumis sativus L. HOM05D001734 ORTHO05D003483 3.2e-07 58.9 74 32.4
SGA_v2.0_scaffold90G27914 Striga asiatica HOM05D001734 ORTHO05D003483 3.2e-07 58.9 74 35.1
vmacro19388 Vaccinium macrocarpon HOM05D001734 ORTHO05D003483 3.2e-07 58.9 74 33.8
Dinv20652 Davidia involucrata HOM05D001734 ORTHO05D003483 5.5e-07 58.2 76 34.2
Thecc.03G012800 Theobroma cacao HOM05D001734 ORTHO05D003483 5.5e-07 58.2 74 33.8
Cpa.g.sc76.53 Carica papaya HOM05D001734 ORTHO05D003483 7.2e-07 57.8 74 31.1
Gorai.006G189100 Gossypium raimondii HOM05D001734 ORTHO05D003483 7.2e-07 57.8 81 37.0
Aa31LG4G16790 Aethionema arabicum HOM05D001734 ORTHO05D003483 9.4e-07 57.4 74 35.1
EL10Ac5g10743 Beta vulgaris HOM05D001734 ORTHO05D003483 9.4e-07 57.4 74 36.5
BolC3t18938H Brassica oleracea HOM05D001734 ORTHO05D003483 9.4e-07 57.4 74 36.5
ClCG06G017040 Citrullus lanatus HOM05D001734 ORTHO05D003483 9.4e-07 57.4 75 33.3
HanXRQChr02g0036361 Helianthus annuus HOM05D001734 ORTHO05D003483 9.4e-07 57.4 74 32.4
Aqoxy3G02937 Aquilegia oxysepala HOM05D001734 ORTHO05D003483 1.2e-06 57.0 74 35.1
Migut.I00009 Erythranthe guttata HOM05D001734 ORTHO05D003483 1.2e-06 57.0 74 33.8
Lsat_1_v5_gn_1_27061 Lactuca sativa HOM05D001734 ORTHO05D003483 1.2e-06 57.0 75 32.0
PGR044G0033 Punica granatum HOM05D001734 ORTHO05D003483 1.2e-06 57.0 74 33.8
Atru.chr9.2479 Acer truncatum HOM05D001734 ORTHO05D003483 2.1e-06 56.2 74 33.8
Thhalv10010050m.g Eutrema salsugineum HOM05D001734 ORTHO05D003483 2.7e-06 55.8 74 33.8
FAN20G1174 Fragaria x ananassa HOM05D001734 ORTHO05D003483 2.7e-06 55.8 74 35.1
Gohir.A09G171700 Gossypium hirsutum HOM05D001734 ORTHO05D003483 2.7e-06 55.8 81 35.8
Gohir.D09G167401 Gossypium hirsutum HOM05D001734 ORTHO05D003483 2.7e-06 55.8 81 35.8
FAN15G3378 Fragaria x ananassa HOM05D001734 ORTHO05D003483 3.6e-06 55.5 74 33.8
Glyma.04G182900 Glycine max HOM05D001734 ORTHO05D003483 3.6e-06 55.5 78 39.7
DCAR_026136 Daucus carota HOM05D001734 ORTHO05D003483 6.1e-06 54.7 75 34.7
FvH4_2g11670 Fragaria vesca HOM05D001734 ORTHO05D003483 6.1e-06 54.7 74 33.8
Sp5g13840 Schrenkiella parvula HOM05D001734 ORTHO05D003483 6.1e-06 54.7 74 33.8
Sed0023277 Sechium edule HOM05D001734 ORTHO05D003483 6.1e-06 54.7 74 31.1
MELO3C017087.2 Cucumis melo HOM05D001734 ORTHO05D003483 8.0e-06 54.3 74 31.1
Lalb_Chr08g0236501 Lupinus albus HOM05D001734 ORTHO05D003483 8.0e-06 54.3 78 38.5
Nitab4.5_0000785g0010 Nicotiana tabacum HOM05D001734 ORTHO05D003483 8.0e-06 54.3 75 34.7


User provided reference genes

Program Settings