Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_09386 Sequoiadendron giganteum HOM05D003169 ORTHO05D003700 2.8e-143 511.9 254 100.0
ATR0794G028 Amborella trichopoda HOM05D003169 ORTHO05D003700 2.2e-47 193.4 131 67.2
PSO541G6458 Papaver somniferum HOM05D003169 ORTHO05D003700 1.1e-46 191.0 127 70.1
MD05G1239900 Malus domestica HOM05D003169 ORTHO05D003700 1.9e-46 190.3 127 68.5
QL04p010784 Quercus lobata HOM05D003169 ORTHO05D003700 1.9e-46 190.3 127 69.3
QL04p095761 Quercus lobata HOM05D003169 ORTHO05D003700 1.9e-46 190.3 127 69.3
Dinv42454 Davidia involucrata HOM05D003169 ORTHO05D003700 2.4e-46 189.9 127 69.3
GSVIVG01036703001 Vitis vinifera HOM05D003169 ORTHO05D003700 2.4e-46 189.9 127 69.3
Gohir.A13G126700 Gossypium hirsutum HOM05D003169 ORTHO05D003700 3.2e-46 189.5 127 68.5
Gohir.D13G130400 Gossypium hirsutum HOM05D003169 ORTHO05D003700 3.2e-46 189.5 127 68.5
Gorai.013G146500 Gossypium raimondii HOM05D003169 ORTHO05D003700 3.2e-46 189.5 127 68.5
Prupe.4G126100 Prunus persica HOM05D003169 ORTHO05D003700 3.2e-46 189.5 127 68.5
HPP92_005947 Vanilla planifolia HOM05D003169 ORTHO05D003700 4.1e-46 189.1 127 66.1
Thecc.07G189500 Theobroma cacao HOM05D003169 ORTHO05D003700 5.4e-46 188.7 127 69.3
MD10G1218000 Malus domestica HOM05D003169 ORTHO05D003700 7.0e-46 188.3 127 68.5
PSO675G7315 Papaver somniferum HOM05D003169 ORTHO05D003700 1.2e-45 187.6 127 69.3
Cfa017765 Carpinus fangiana HOM05D003169 ORTHO05D003700 1.6e-45 187.2 127 68.5
THA.LOC104812392 Tarenaya hassleriana HOM05D003169 ORTHO05D003700 1.6e-45 187.2 127 67.7
Cpa.g.sc32.147 Carica papaya HOM05D003169 ORTHO05D003700 2.0e-45 186.8 127 66.1
CiPaw.15G111900 Carya illinoinensis HOM05D003169 ORTHO05D003700 2.0e-45 186.8 127 67.7
Nn7g38410 Nelumbo nucifera HOM05D003169 ORTHO05D003700 2.7e-45 186.4 127 66.9
Potri.010G174900 Populus trichocarpa HOM05D003169 ORTHO05D003700 2.7e-45 186.4 127 66.9
Hma1.2p1_0754F.1_g213010 Hydrangea macrophylla HOM05D003169 ORTHO05D003700 3.5e-45 186.0 127 68.5
Carub.0002s2621 Capsella rubella HOM05D003169 ORTHO05D003700 4.6e-45 185.7 127 66.1
PGR031G0700 Punica granatum HOM05D003169 ORTHO05D003700 4.6e-45 185.7 127 68.5
CSS0011288 Camellia sinensis var. sinensis HOM05D003169 ORTHO05D003700 6.0e-45 185.3 127 66.9
Manes.16G048930 Manihot esculenta HOM05D003169 ORTHO05D003700 6.0e-45 185.3 127 66.1
Thhalv10018021m.g Eutrema salsugineum HOM05D003169 ORTHO05D003700 7.8e-45 184.9 127 66.1
Sp5g34410 Schrenkiella parvula HOM05D003169 ORTHO05D003700 7.8e-45 184.9 127 66.1
BcaB02g08679 Brassica carinata HOM05D003169 ORTHO05D003700 1.3e-44 184.1 127 66.9
BcaC08g47495 Brassica carinata HOM05D003169 ORTHO05D003700 1.3e-44 184.1 127 66.9
A07p44430 Brassica napus HOM05D003169 ORTHO05D003700 1.3e-44 184.1 127 66.9
C06p53240 Brassica napus HOM05D003169 ORTHO05D003700 1.3e-44 184.1 127 66.9
BolC6t40342H Brassica oleracea HOM05D003169 ORTHO05D003700 1.3e-44 184.1 127 66.9
BraA07t31952Z Brassica rapa HOM05D003169 ORTHO05D003700 1.3e-44 184.1 127 66.9
FvH4_3g13920 Fragaria vesca HOM05D003169 ORTHO05D003700 1.3e-44 184.1 127 67.7
RcHm_v2.0_Chr5g0023151 Rosa chinensis HOM05D003169 ORTHO05D003700 1.3e-44 184.1 127 67.7
TAR627G0022 Trochodendron aralioides HOM05D003169 ORTHO05D003700 1.3e-44 184.1 127 68.5
AT1G79350 Arabidopsis thaliana HOM05D003169 ORTHO05D003700 1.7e-44 183.7 127 65.4
Lj2A8G61 Lonicera japonica HOM05D003169 ORTHO05D003700 2.3e-44 183.3 127 66.9
TWI38G0104 Tripterygium wilfordii HOM05D003169 ORTHO05D003700 2.3e-44 183.3 127 66.1
TWI38G0597 Tripterygium wilfordii HOM05D003169 ORTHO05D003700 2.3e-44 183.3 127 66.1
ECA240G3251 Erigeron canadensis HOM05D003169 ORTHO05D003700 3.0e-44 183.0 127 66.9
Sabra10G0134700 Salix brachista HOM05D003169 ORTHO05D003700 5.0e-44 182.2 127 65.4
Aqoxy1G01380 Aquilegia oxysepala HOM05D003169 ORTHO05D003700 6.6e-44 181.8 127 66.9
Cc00_g09100 Coffea canephora HOM05D003169 ORTHO05D003700 6.6e-44 181.8 127 65.4
Hund20128 Selenicereus undatus HOM05D003169 ORTHO05D003700 6.6e-44 181.8 127 66.9
EL10Ac2g03244 Beta vulgaris HOM05D003169 ORTHO05D003700 8.6e-44 181.4 127 65.4
Rhsim06G0244800 Rhododendron simsii HOM05D003169 ORTHO05D003700 8.6e-44 181.4 127 65.4
Actinidia26204 Actinidia chinensis HOM05D003169 ORTHO05D003700 1.1e-43 181.0 127 65.4
Atru.chr1.22 Acer truncatum HOM05D003169 ORTHO05D003700 1.5e-43 180.6 125 66.4
arahy.Tifrunner.gnm1.ann1.4D9FZH Arachis hypogaea HOM05D003169 ORTHO05D003700 1.5e-43 180.6 127 63.8
Aa31LG4G1680 Aethionema arabicum HOM05D003169 ORTHO05D003700 1.9e-43 180.3 127 64.6
arahy.Tifrunner.gnm1.ann1.0T77JN Arachis hypogaea HOM05D003169 ORTHO05D003700 1.9e-43 180.3 127 63.8
AUR62041054 Chenopodium quinoa HOM05D003169 ORTHO05D003700 2.5e-43 179.9 127 64.6
Duzib213G0284 Durio zibethinus HOM05D003169 ORTHO05D003700 2.5e-43 179.9 127 65.4
vmacro22494 Vaccinium macrocarpon HOM05D003169 ORTHO05D003700 2.5e-43 179.9 127 65.4
CAN.G492.81 Capsicum annuum HOM05D003169 ORTHO05D003700 3.3e-43 179.5 127 64.6
Lalb_Chr19g0133151 Lupinus albus HOM05D003169 ORTHO05D003700 3.3e-43 179.5 131 61.1
Migut.M01496 Erythranthe guttata HOM05D003169 ORTHO05D003700 7.3e-43 178.3 127 65.4
MSTRG.7098 Avicennia marina HOM05D003169 ORTHO05D003700 9.5e-43 177.9 127 63.0
CANSAT56G1976 Cannabis sativa HOM05D003169 ORTHO05D003700 9.5e-43 177.9 127 63.8
Glyma.15G219200 Glycine max HOM05D003169 ORTHO05D003700 9.5e-43 177.9 127 64.6
Glyma.08G233702 Glycine max HOM05D003169 ORTHO05D003700 1.2e-42 177.6 127 63.8
HanXRQChr03g0077801 Helianthus annuus HOM05D003169 ORTHO05D003700 1.2e-42 177.6 127 65.4
Nitab4.5_0007774g0020 Nicotiana tabacum HOM05D003169 ORTHO05D003700 1.2e-42 177.6 127 63.8
Phvul.011G180100 Phaseolus vulgaris HOM05D003169 ORTHO05D003700 1.6e-42 177.2 127 63.8
AUR62043014 Chenopodium quinoa HOM05D003169 ORTHO05D003700 2.1e-42 176.8 127 64.6
Ca_22977_v3 Cicer arietinum L. HOM05D003169 ORTHO05D003700 2.1e-42 176.8 127 63.0
Lj3g0024633 Lotus japonicus HOM05D003169 ORTHO05D003700 2.1e-42 176.8 127 63.0
Medtr8g447090 Medicago truncatula HOM05D003169 ORTHO05D003700 2.1e-42 176.8 127 63.0
TPR.G30141 Trifolium pratense HOM05D003169 ORTHO05D003700 2.1e-42 176.8 127 63.0
FAN25G3213 Fragaria x ananassa HOM05D003169 ORTHO05D003700 2.8e-42 176.4 134 64.2
Peaxi162Scf00670g00216 Petunia axillaris HOM05D003169 ORTHO05D003700 2.8e-42 176.4 128 66.4
FAN21G1262 Fragaria x ananassa HOM05D003169 ORTHO05D003700 3.6e-42 176.0 134 63.4
Oeu025995.1 Olea europaea HOM05D003169 ORTHO05D003700 3.6e-42 176.0 127 62.2
MELO3C019615.2 Cucumis melo HOM05D003169 ORTHO05D003700 6.2e-42 175.3 127 62.2
CsaV3_6G013370 Cucumis sativus L. HOM05D003169 ORTHO05D003700 6.2e-42 175.3 127 62.2
VMungo1127G0192 Vigna mungo HOM05D003169 ORTHO05D003700 6.2e-42 175.3 127 63.0
Eucgr.F04478 Eucalyptus grandis HOM05D003169 ORTHO05D003700 8.1e-42 174.9 127 63.0
Psat4g185200 Pisum sativum HOM05D003169 ORTHO05D003700 8.1e-42 174.9 127 62.2
Potri.008G081200 Populus trichocarpa HOM05D003169 ORTHO05D003700 8.1e-42 174.9 127 62.2
Nitab4.5_0003291g0060 Nicotiana tabacum HOM05D003169 ORTHO05D003700 1.1e-41 174.5 127 63.0
TAR629G1197 Trochodendron aralioides HOM05D003169 ORTHO05D003700 1.1e-41 174.5 127 64.6
Oeu032680.1 Olea europaea HOM05D003169 ORTHO05D003700 1.4e-41 174.1 127 63.0
Os04g0609700 Oryza sativa ssp. japonica HOM05D003169 ORTHO05D003700 2.3e-41 173.3 127 59.1
DCAR_016853 Daucus carota HOM05D003169 ORTHO05D003700 3.1e-41 172.9 127 63.0
Ca_03194_v3 Cicer arietinum L. HOM05D003845 ORTHO05D003700 4.0e-41 172.6 131 59.5
Sed0006985 Sechium edule HOM05D003169 ORTHO05D003700 5.2e-41 172.2 127 62.2
Lsat_1_v5_gn_7_69060 Lactuca sativa HOM05D003169 ORTHO05D003700 6.8e-41 171.8 127 65.4
Zm00001eb413950 Zea mays HOM05D003169 ORTHO05D003700 6.8e-41 171.8 127 59.8
Sopen10g001470 Solanum pennellii HOM05D003169 ORTHO05D003700 8.9e-41 171.4 127 62.2
Haze_18485 Corylus avellana HOM05D003169 ORTHO05D003700 1.2e-40 171.0 127 64.6
Oeu029455.1 Olea europaea HOM05D003169 ORTHO05D003700 1.2e-40 171.0 127 63.0
Lj3g0007581 Lotus japonicus HOM05D003169 ORTHO05D003700 2.0e-40 170.2 127 59.8
Pp3c3_5410 Physcomitrium patens HOM05D003169 ORTHO05D003700 2.0e-40 170.2 127 63.8
SGA_v2.0_scaffold186G40168 Striga asiatica HOM05D003169 ORTHO05D003700 5.8e-40 168.7 127 63.8
Sc06g0001640 Simmondsia chinensis HOM05D003169 ORTHO05D003700 1.3e-39 167.5 127 63.0
Zm00001eb430630 Zea mays HOM05D003169 ORTHO05D003700 1.7e-39 167.2 127 59.1
CSS0003080 Camellia sinensis var. sinensis HOM05D003169 ORTHO05D003700 2.9e-39 166.4 127 60.6
Medtr2g063620 Medicago truncatula HOM05D003169 ORTHO05D003700 3.7e-39 166.0 127 60.6
Mapoly0153s0011 Marchantia polymorpha HOM05D003169 ORTHO05D003700 4.9e-39 165.6 127 60.6
Peaxi162Scf00420g00518 Petunia axillaris HOM05D003169 ORTHO05D003700 1.1e-38 164.5 134 59.7
Rhsim02G0183500 Rhododendron simsii HOM05D003169 ORTHO05D003700 1.4e-38 164.1 127 60.6
arahy.Tifrunner.gnm1.ann1.JSN7JY Arachis hypogaea HOM05D003169 ORTHO05D003700 1.9e-38 163.7 127 57.5
HanXRQChr13g0408911 Helianthus annuus HOM05D003169 ORTHO05D003700 4.1e-38 162.5 126 60.3
HanXRQChr13g0408941 Helianthus annuus HOM05D003169 ORTHO05D003700 4.1e-38 162.5 126 60.3
Peaxi162Scf00166g00077 Petunia axillaris HOM05D003169 ORTHO05D003700 4.1e-38 162.5 134 59.7
Psat0s11g0040 Pisum sativum HOM05D003169 ORTHO05D003700 4.1e-38 162.5 127 58.3
SMO358G0497 Selaginella moellendorffii HOM05D003169 ORTHO05D003700 7.1e-38 161.8 127 63.8
FAN16G1231 Fragaria x ananassa HOM05D003169 ORTHO05D003700 9.2e-38 161.4 175 49.1
Medtr6g091960 Medicago truncatula HOM05D003169 ORTHO05D003700 9.2e-38 161.4 125 60.8
arahy.Tifrunner.gnm1.ann1.THX68V Arachis hypogaea HOM05D003169 ORTHO05D003700 1.2e-37 161.0 127 56.7
Medtr2g063813 Medicago truncatula HOM05D003169 ORTHO05D003700 2.7e-37 159.8 125 60.0
Lalb_Chr20g0108381 Lupinus albus HOM05D003169 ORTHO05D003700 4.6e-37 159.1 127 59.1
TPR.G3624 Trifolium pratense HOM05D003169 ORTHO05D003700 2.5e-35 153.3 124 58.9
AagrBONN_evm.TU.Sc2ySwM_228.2486 Anthoceros agrestis HOM05D003169 ORTHO05D003700 9.5e-35 151.4 127 58.3
DCAR_013705 Daucus carota HOM05D003169 ORTHO05D003700 9.5e-35 151.4 127 55.9
Rhsim06G0106300 Rhododendron simsii HOM05D003169 ORTHO05D003700 9.5e-35 151.4 127 58.3
FAN11G1789 Fragaria x ananassa HOM05D003169 ORTHO05D003700 1.2e-32 144.4 121 60.3
TPR.G3619 Trifolium pratense HOM05D003169 ORTHO05D003700 1.0e-28 131.3 158 42.4
Ah.16g106160 Amaranthus hybridus HOM05D003169 ORTHO05D003700 1.1e-27 127.9 155 47.1
DCAR_013706 Daucus carota HOM05D003169 ORTHO05D003700 1.8e-25 120.6 140 45.7
ClCG02G018810 Citrullus lanatus HOM05D003169 ORTHO05D003700 2.4e-25 120.2 127 48.0
HanXRQChr16g0505691 Helianthus annuus HOM05D003169 ORTHO05D003700 1.5e-24 117.5 87 62.1
TPR.G40025 Trifolium pratense HOM05D003169 ORTHO05D003700 3.4e-24 116.3 98 53.1
Os08g0223833 Oryza sativa ssp. japonica HOM05D003169 ORTHO05D003700 3.2e-22 109.8 127 44.9
Nitab4.5_0003291g0040 Nicotiana tabacum HOM05D003169 ORTHO05D003700 5.4e-22 109.0 180 38.3
SEGI_25392 Sequoiadendron giganteum HOM05D003169 ORTHO05D003700 3.5e-21 106.3 62 85.5
COL.COLO4_25001 Corchorus olitorius HOM05D003169 ORTHO05D003700 9.6e-19 98.2 62 71.0
TPR.G14822 Trifolium pratense HOM05D003169 ORTHO05D003700 1.6e-18 97.4 125 42.4
BcaB02g08681 Brassica carinata HOM05D003169 ORTHO05D003700 2.1e-18 97.1 62 71.0
TPR.G19390 Trifolium pratense HOM05D003169 ORTHO05D003700 4.0e-17 92.8 70 65.7
TPR.G39754 Trifolium pratense HOM05D003169 ORTHO05D003700 3.2e-14 83.2 66 60.6
Cre07.g350100 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 4.2e-14 82.8 136 33.1
CBR_g11926 Chara braunii HOM05D003169 ORTHO05D000002 9.3e-14 81.6 62 58.1
MCO16G570 Micromonas commoda HOM05D003169 ORTHO05D003700 1.2e-13 81.3 125 39.2
Cre13.g578501 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 2.7e-13 80.1 112 37.5
MBI18_g37376_MAGBIO Magnolia biondii HOM05D003169 ORTHO05D003700 2.3e-12 77.0 63 54.0
TPR.G7301 Trifolium pratense HOM05D003169 ORTHO05D003700 3.9e-12 76.3 55 65.5
MCO01G648 Micromonas commoda HOM05D003169 ORTHO05D003700 5.1e-12 75.9 122 36.1
Cre01.g053250 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 2.1e-10 70.5 125 32.0
Cre02.g095045 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 3.6e-10 69.7 120 36.7
Thhalv10000653m.g Eutrema salsugineum HOM05D003169 ORTHO05D003700 4.8e-10 69.3 41 73.2
Haze_26591 Corylus avellana HOM05D003169 ORTHO05D003700 4.0e-09 66.2 124 30.6
PRCOL_00005992 Prasinoderma coloniale HOM05D003169 ORTHO05D003700 5.8e-08 62.4 117 32.5


User provided reference genes

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