Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_09331 Sequoiadendron giganteum HOM05D004952 ORTHO05D006131 5.0e-182 641.0 321 100.0
SEGI_19344 Sequoiadendron giganteum HOM05D004952 ORTHO05D006131 4.8e-84 315.5 162 95.1
ATR0706G013 Amborella trichopoda HOM05D004952 ORTHO05D006131 8.8e-78 294.7 313 51.4
Pp3c13_8820 Physcomitrium patens HOM05D004952 ORTHO05D006131 1.3e-76 290.8 276 55.4
MD15G1036000 Malus domestica HOM05D004952 ORTHO05D006131 2.2e-73 280.0 298 51.0
TAR381G0370 Trochodendron aralioides HOM05D004952 ORTHO05D006131 4.0e-70 269.2 314 47.5
GSVIVG01009573001 Vitis vinifera HOM05D004952 ORTHO05D006131 5.7e-69 265.4 274 50.0
Atru.chr13.612 Acer truncatum HOM05D004952 ORTHO05D006131 1.3e-68 264.2 317 47.6
Nn6g34572 Nelumbo nucifera HOM05D004952 ORTHO05D006131 4.8e-68 262.3 302 47.0
Aqoxy6G00884 Aquilegia oxysepala HOM05D004952 ORTHO05D006131 1.8e-67 260.4 278 48.9
FvH4_2g40750 Fragaria vesca HOM05D004952 ORTHO05D006131 2.4e-67 260.0 306 48.4
PSO063G1848 Papaver somniferum HOM05D004952 ORTHO05D006131 2.4e-67 260.0 314 46.8
FAN15G3424 Fragaria x ananassa HOM05D004952 ORTHO05D006131 9.1e-67 258.1 306 48.7
QL02p006188 Quercus lobata HOM05D004952 ORTHO05D006131 9.1e-67 258.1 306 47.7
Actinidia03540 Actinidia chinensis HOM05D004952 ORTHO05D006131 1.2e-66 257.7 280 48.9
CiPaw.16G049700 Carya illinoinensis HOM05D004952 ORTHO05D006131 1.6e-66 257.3 319 46.7
TWI36G1022 Tripterygium wilfordii HOM05D004952 ORTHO05D006131 1.6e-66 257.3 279 49.5
Hma1.2p1_0260F.1_g104650 Hydrangea macrophylla HOM05D004952 ORTHO05D006131 3.5e-66 256.1 306 45.4
TAR625G1292 Trochodendron aralioides HOM05D004952 ORTHO05D006131 3.5e-66 256.1 306 46.1
RcHm_v2.0_Chr6g0299841 Rosa chinensis HOM05D004952 ORTHO05D006131 5.9e-66 255.4 315 47.3
Duzib114G0971 Durio zibethinus HOM05D004952 ORTHO05D006131 1.7e-65 253.8 318 45.0
Mapoly0015s0183 Marchantia polymorpha HOM05D004952 ORTHO05D006131 2.3e-65 253.4 321 45.8
Ciclev10000139m.g Citrus clementina HOM05D004952 ORTHO05D006131 2.9e-65 253.1 320 46.2
Lsat_1_v5_gn_6_69040 Lactuca sativa HOM05D004952 ORTHO05D006131 5.0e-65 252.3 278 47.1
Lj4C49T7 Lonicera japonica HOM05D004952 ORTHO05D006131 5.0e-65 252.3 307 44.6
FAN27G3039 Fragaria x ananassa HOM05D004952 ORTHO05D006131 6.6e-65 251.9 296 48.3
Rhsim13G0049200 Rhododendron simsii HOM05D004952 ORTHO05D006131 2.5e-64 250.0 303 46.2
Sed0020372 Sechium edule HOM05D004952 ORTHO05D006131 2.5e-64 250.0 299 44.8
CsaV3_4G034010 Cucumis sativus L. HOM05D004952 ORTHO05D006131 3.3e-64 249.6 277 46.2
Eucgr.F02379 Eucalyptus grandis HOM05D004952 ORTHO05D006131 4.7e-63 245.7 318 42.8
PGR031G2121 Punica granatum HOM05D004952 ORTHO05D006131 4.7e-63 245.7 300 45.7
PGSC0003DMG400008031 Solanum tuberosum HOM05D004952 ORTHO05D006131 6.1e-63 245.4 279 48.0
Gohir.A10G194100 Gossypium hirsutum HOM05D004952 ORTHO05D006131 1.4e-62 244.2 266 48.9
Sc18g0002370 Simmondsia chinensis HOM05D004952 ORTHO05D006131 1.4e-62 244.2 279 45.9
ClCG05G019550 Citrullus lanatus HOM05D004952 ORTHO05D006131 1.8e-62 243.8 290 45.9
EL10Ac2g03413 Beta vulgaris HOM05D004952 ORTHO05D006131 5.2e-62 242.3 275 46.5
CAN.G371.63 Capsicum annuum HOM05D004952 ORTHO05D006131 5.2e-62 242.3 279 48.0
COL.COLO4_06475 Corchorus olitorius HOM05D004952 ORTHO05D006131 5.2e-62 242.3 279 45.2
Sopen04g033000 Solanum pennellii HOM05D004952 ORTHO05D006131 5.2e-62 242.3 279 47.7
Thecc.10G126500 Theobroma cacao HOM05D004952 ORTHO05D006131 6.8e-62 241.9 259 49.4
HanXRQChr02g0059171 Helianthus annuus HOM05D004952 ORTHO05D006131 2.6e-61 240.0 279 45.5
Solyc04g079390.3 Solanum lycopersicum HOM05D004952 ORTHO05D006131 4.4e-61 239.2 279 47.3
arahy.Tifrunner.gnm1.ann1.LUQS0S Arachis hypogaea HOM05D004952 ORTHO05D006131 9.8e-61 238.0 275 44.7
Gohir.D10G201200 Gossypium hirsutum HOM05D004952 ORTHO05D006131 1.3e-60 237.7 266 48.1
Gorai.011G225900 Gossypium raimondii HOM05D004952 ORTHO05D006131 1.3e-60 237.7 266 48.1
Cc10_g03830 Coffea canephora HOM05D004952 ORTHO05D006131 2.8e-60 236.5 279 46.6
THA.LOC104813523 Tarenaya hassleriana HOM05D004952 ORTHO05D006131 2.8e-60 236.5 296 44.6
CANSAT25G3148 Cannabis sativa HOM05D004952 ORTHO05D006131 3.7e-60 236.1 280 45.7
MELO3C016726.2 Cucumis melo HOM05D004952 ORTHO05D006131 8.3e-60 235.0 304 42.4
arahy.Tifrunner.gnm1.ann1.SSY1YH Arachis hypogaea HOM05D004952 ORTHO05D006131 1.8e-59 233.8 319 40.4
Os02g0523300 Oryza sativa ssp. japonica HOM05D004952 ORTHO05D006131 2.4e-59 233.4 297 43.8
Cpa.g.sc64.8 Carica papaya HOM05D004952 ORTHO05D006131 3.2e-59 233.0 274 45.6
Lalb_Chr08g0245691 Lupinus albus HOM05D004952 ORTHO05D006131 3.2e-59 233.0 289 44.6
AagrBONN_evm.TU.Sc2ySwM_344.3827 Anthoceros agrestis HOM05D004952 ORTHO05D006131 4.1e-59 232.6 295 46.1
Glyma.06G036500 Glycine max HOM05D004952 ORTHO05D006131 7.0e-59 231.9 309 42.7
Psat5g044920 Pisum sativum HOM05D004952 ORTHO05D006131 7.0e-59 231.9 315 41.6
Oeu055752.1 Olea europaea HOM05D004952 ORTHO05D006131 1.2e-58 231.1 325 41.8
Os12g0606100 Oryza sativa ssp. japonica HOM05D004952 ORTHO05D006131 1.2e-58 231.1 297 43.4
Medtr3g101230 Medicago truncatula HOM05D004952 ORTHO05D006131 1.0e-57 228.0 288 42.4
Migut.C00614 Erythranthe guttata HOM05D004952 ORTHO05D006131 1.3e-57 227.6 280 43.9
Thhalv10018067m.g Eutrema salsugineum HOM05D004952 ORTHO05D006131 1.7e-57 227.3 292 43.8
VMungo1309G1417 Vigna mungo HOM05D004952 ORTHO05D006131 2.3e-57 226.9 274 45.6
Zm00001eb327280 Zea mays HOM05D004952 ORTHO05D006131 2.3e-57 226.9 300 43.7
MSTRG.25114 Avicennia marina HOM05D004952 ORTHO05D006131 8.6e-57 224.9 273 45.4
Phvul.009G062500 Phaseolus vulgaris HOM05D004952 ORTHO05D006131 8.6e-57 224.9 307 42.0
BcaB02g07284 Brassica carinata HOM05D004952 ORTHO05D006131 1.2e-55 221.1 289 43.3
Hund10174 Selenicereus undatus HOM05D004952 ORTHO05D006131 1.6e-55 220.7 244 46.7
Nitab4.5_0012613g0030 Nicotiana tabacum HOM05D004952 ORTHO05D006131 4.7e-55 219.2 299 43.1
Lj1g0021809 Lotus japonicus HOM05D004952 ORTHO05D006131 8.0e-55 218.4 276 44.2
CARHR074230 Cardamine hirsuta HOM05D004952 ORTHO05D006131 1.0e-54 218.0 294 43.9
Oeu007037.1 Olea europaea HOM05D004952 ORTHO05D006131 1.0e-54 218.0 263 43.7
Nitab4.5_0000068g0320 Nicotiana tabacum HOM05D004952 ORTHO05D006131 1.4e-54 217.6 299 43.1
AUR62038364 Chenopodium quinoa HOM05D004952 ORTHO05D006131 8.9e-54 214.9 256 46.5
AT1G80260 Arabidopsis thaliana HOM05D004952 ORTHO05D006131 1.5e-53 214.2 294 42.9
Ca_15974_v3 Cicer arietinum L. HOM05D004952 ORTHO05D006131 2.6e-53 213.4 310 39.4
CANSAT35G0575 Cannabis sativa HOM05D004952 ORTHO05D006131 3.4e-53 213.0 261 44.8
Sp5g35550 Schrenkiella parvula HOM05D004952 ORTHO05D006131 7.5e-53 211.8 284 42.6
AUR62040965 Chenopodium quinoa HOM05D004952 ORTHO05D006131 2.9e-52 209.9 257 45.9
Carub.0001s2004 Capsella rubella HOM05D004952 ORTHO05D006131 4.9e-52 209.1 252 45.2
AT1G20570 Arabidopsis thaliana HOM05D004952 ORTHO05D006131 1.1e-51 208.0 285 42.8
DCAR_008784 Daucus carota HOM05D004952 ORTHO05D006131 1.9e-51 207.2 280 43.2
BcaC03g15988 Brassica carinata HOM05D004952 ORTHO05D006131 2.4e-51 206.8 317 38.8
Cfa003370 Carpinus fangiana HOM05D004952 ORTHO05D006131 2.4e-51 206.8 318 41.2
CBR_g22067 Chara braunii HOM05D004952 ORTHO05D006131 7.0e-51 205.3 317 40.4
CSS0007693 Camellia sinensis var. sinensis HOM05D004952 ORTHO05D006131 9.2e-51 204.9 229 48.0
vmacro02786 Vaccinium macrocarpon HOM05D004952 ORTHO05D006131 2.7e-50 203.4 281 41.6
Potri.016G000100 Populus trichocarpa HOM05D004952 ORTHO05D006131 6.0e-50 202.2 259 45.9
Haze_17576 Corylus avellana HOM05D004952 ORTHO05D006131 1.0e-49 201.4 292 41.4
SalBow7G3268 Salvia bowleyana HOM05D004952 ORTHO05D006131 3.9e-49 199.5 280 41.1
BcaB05g25284 Brassica carinata HOM05D004952 ORTHO05D006131 1.9e-48 197.2 284 41.2
Manes.10G059950 Manihot esculenta HOM05D004952 ORTHO05D006131 2.5e-48 196.8 303 40.9
Peaxi162Scf01092g00128 Petunia axillaris HOM05D004952 ORTHO05D006131 7.3e-48 195.3 279 38.7
A02p23690 Brassica napus HOM05D004952 ORTHO05D006131 3.6e-47 193.0 284 40.1
Sabra16G0008200 Salix brachista HOM05D004952 ORTHO05D006131 1.8e-46 190.7 289 41.5
CSS0048180 Camellia sinensis var. sinensis HOM05D004952 ORTHO05D006131 2.3e-46 190.3 201 50.7
BraA02t07362Z Brassica rapa HOM05D004952 ORTHO05D006131 8.9e-46 188.3 272 40.4
SHI13748 Sapria himalayana HOM05D004952 ORTHO05D006131 3.4e-45 186.4 296 37.8
SGA_v2.0_scaffold156G37306 Striga asiatica HOM05D004952 ORTHO05D006131 1.2e-42 177.9 289 39.4
C02p37450 Brassica napus HOM05D004952 ORTHO05D006131 7.3e-40 168.7 317 34.7
ECA240G1628 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.8e-39 166.8 247 39.3
Haze_25582 Corylus avellana HOM05D004952 ORTHO05D006131 8.1e-39 165.2 354 33.6
Aa31LG4G540 Aethionema arabicum HOM05D004952 ORTHO05D006131 2.3e-38 163.7 279 36.2
BolC2t09757H Brassica oleracea HOM05D004952 ORTHO05D006131 5.8e-37 159.1 317 34.4
Prupe.1G389900 Prunus persica HOM05D004952 ORTHO05D006131 4.1e-35 152.9 157 49.0
unitig_0.g725 Utricularia gibba HOM05D004952 ORTHO05D006131 1.2e-31 141.4 174 39.7
CBR_g19823 Chara braunii HOM05D004952 ORTHO05D000937 5.2e-30 136.0 211 40.3
Glyma.04G036340 Glycine max HOM05D004952 ORTHO05D006131 1.4e-27 127.9 177 44.6
FAN20G1371 Fragaria x ananassa HOM05D004952 ORTHO05D006131 2.4e-27 127.1 211 38.9
TPR.G26027 Trifolium pratense HOM05D004952 ORTHO05D006131 2.1e-26 124.0 154 40.3
PSO339G5893 Papaver somniferum HOM05D004952 ORTHO05D006131 1.6e-23 114.4 119 49.6
Manes.02G076400 Manihot esculenta HOM05D004952 ORTHO05D006131 5.8e-21 105.9 119 45.4
Ah.16g107230 Amaranthus hybridus HOM05D004952 ORTHO05D006131 6.6e-17 92.4 130 40.8
C06p29060 Brassica napus HOM05D004952 ORTHO05D006131 4.5e-13 79.7 105 42.9
BolC6t38069H Brassica oleracea HOM05D004952 ORTHO05D006131 4.5e-13 79.7 105 42.9
Glyma.04G036380 Glycine max HOM05D004952 ORTHO05D006131 1.0e-09 68.6 71 42.3
HPP92_010073 Vanilla planifolia HOM05D004952 ORTHO05D006131 1.3e-09 68.2 147 32.0
unitig_0.g726 Utricularia gibba HOM05D004952 ORTHO05D006131 1.1e-06 58.5 82 42.7


User provided reference genes

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