Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_08996 Sequoiadendron giganteum HOM05D000862 ORTHO05D000943 9.1e-136 486.9 242 100.0
SEGI_11682 Sequoiadendron giganteum HOM05D000862 ORTHO05D000943 2.6e-82 309.3 243 67.5
SEGI_22564 Sequoiadendron giganteum HOM05D000862 ORTHO05D000943 4.2e-80 302.0 249 66.3
SEGI_10515 Sequoiadendron giganteum HOM05D000862 ORTHO05D000943 6.4e-73 278.1 233 63.9
SEGI_10130 Sequoiadendron giganteum HOM05D000862 ORTHO05D000943 6.0e-71 271.6 230 63.9
SEGI_08572 Sequoiadendron giganteum HOM05D000862 ORTHO05D000943 9.0e-67 257.7 209 64.1
SEGI_40102 Sequoiadendron giganteum HOM05D000862 ORTHO05D000943 1.7e-44 183.7 226 44.7
SEGI_10854 Sequoiadendron giganteum HOM05D000862 ORTHO05D384241 3.2e-40 169.5 158 60.8
SEGI_13258 Sequoiadendron giganteum HOM05D000862 ORTHO05D386750 2.0e-37 160.2 218 44.0
SEGI_00697 Sequoiadendron giganteum HOM05D000862 ORTHO05D000943 7.7e-34 148.3 217 41.5
SEGI_04793 Sequoiadendron giganteum HOM05D000862 ORTHO05D000943 1.7e-33 147.1 202 41.6
SEGI_26697 Sequoiadendron giganteum HOM05D000862 ORTHO05D012168 3.0e-30 136.3 151 52.3
SEGI_14333 Sequoiadendron giganteum HOM05D000862 ORTHO05D000943 2.1e-15 87.0 53 67.9
EL10Ac1g00597 Beta vulgaris HOM05D000862 ORTHO05D000943 1.5e-13 80.9 137 35.0
AUR62014465 Chenopodium quinoa HOM05D000862 ORTHO05D000943 2.8e-12 76.6 111 36.0
AUR62034532 Chenopodium quinoa HOM05D000862 ORTHO05D000943 1.2e-10 71.2 107 33.6
GSVIVG01016899001 Vitis vinifera HOM05D000862 ORTHO05D000943 5.9e-10 68.9 141 28.4
AT1G19715 Arabidopsis thaliana HOM05D000862 ORTHO05D000943 1.7e-09 67.4 97 38.1
Zm00001eb342390 Zea mays HOM05D000862 ORTHO05D000943 2.3e-09 67.0 104 39.4
CiPaw.01G227800 Carya illinoinensis HOM05D000862 ORTHO05D000943 2.9e-09 66.6 106 36.8
arahy.Tifrunner.gnm1.ann1.Q9TM1C Arachis hypogaea HOM05D000862 ORTHO05D000943 5.0e-09 65.9 106 36.8
arahy.Tifrunner.gnm1.ann1.WE7T8M Arachis hypogaea HOM05D000862 ORTHO05D000943 5.0e-09 65.9 106 36.8
Sp1g17550 Schrenkiella parvula HOM05D000862 ORTHO05D000943 5.0e-09 65.9 135 31.1
TWI56G0138 Tripterygium wilfordii HOM05D000862 ORTHO05D000943 5.0e-09 65.9 96 39.6
Aa31LG4G5670 Aethionema arabicum HOM05D000862 ORTHO05D000943 8.6e-09 65.1 124 32.3
AL1G32440 Arabidopsis lyrata HOM05D000862 ORTHO05D000943 1.1e-08 64.7 97 38.1
CSS0018130 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D000943 1.1e-08 64.7 127 33.9
CDE07G1493 Ceratophyllum demersum HOM05D000862 ORTHO05D000943 1.1e-08 64.7 102 40.2
Ah.12g065440 Amaranthus hybridus HOM05D000862 ORTHO05D000943 1.5e-08 64.3 106 37.7
ECA232G0115 Erigeron canadensis HOM05D000862 ORTHO05D000943 1.5e-08 64.3 104 36.5
vmacro17004 Vaccinium macrocarpon HOM05D000862 ORTHO05D000943 1.5e-08 64.3 125 34.4
Atru.chr13.394 Acer truncatum HOM05D000862 ORTHO05D000943 1.9e-08 63.9 96 40.6
Aa31LG7G4300 Aethionema arabicum HOM05D000862 ORTHO05D000943 1.9e-08 63.9 123 31.7
MBI01_g12677_MAGBIO Magnolia biondii HOM05D000862 ORTHO05D000943 1.9e-08 63.9 104 37.5
Cpa.g.sc131.20 Carica papaya HOM05D000862 ORTHO05D000943 3.3e-08 63.2 107 35.5
PSO210G4227 Papaver somniferum HOM05D000862 ORTHO05D000943 3.3e-08 63.2 106 33.0
Solyc03g121300.2 Solanum lycopersicum HOM05D000862 ORTHO05D000943 3.3e-08 63.2 106 35.8
ATR0789G026 Amborella trichopoda HOM05D000862 ORTHO05D000943 5.6e-08 62.4 102 35.3
PSO210G7120 Papaver somniferum HOM05D000862 ORTHO05D000943 5.6e-08 62.4 106 33.0
ATR0665G023 Amborella trichopoda HOM05D000862 ORTHO05D000943 7.3e-08 62.0 107 35.5
EL10Ac1g00596 Beta vulgaris HOM05D000862 ORTHO05D000943 7.3e-08 62.0 107 32.7
Dinv37939 Davidia involucrata HOM05D000862 ORTHO05D000943 7.3e-08 62.0 107 35.5
HanXRQChr09g0275591 Helianthus annuus HOM05D000862 ORTHO05D000943 7.3e-08 62.0 105 35.2
MD08G1023700 Malus domestica HOM05D000862 ORTHO05D000943 7.3e-08 62.0 96 39.6
Hund26884 Selenicereus undatus HOM05D000862 ORTHO05D000943 7.3e-08 62.0 107 36.4
Glyma.02G227500 Glycine max HOM05D000862 ORTHO05D000943 9.5e-08 61.6 96 37.5
Cpa.g.c31450.2 Carica papaya HOM05D000862 ORTHO05D000943 1.2e-07 61.2 96 40.6
CAN.G1668.2 Capsicum annuum HOM05D000862 ORTHO05D000943 1.6e-07 60.8 106 35.8
Ca_14945_v3 Cicer arietinum L. HOM05D000862 ORTHO05D000943 1.6e-07 60.8 96 39.6
Thhalv10007145m.g Eutrema salsugineum HOM05D000862 ORTHO05D000943 1.6e-07 60.8 97 36.1
QL05p016350 Quercus lobata HOM05D000862 ORTHO05D000943 1.6e-07 60.8 107 33.6
Ah.05g180910 Amaranthus hybridus HOM05D000862 ORTHO05D000943 2.1e-07 60.5 105 36.2
A02p18420 Brassica napus HOM05D000862 ORTHO05D000943 2.1e-07 60.5 151 29.1
CDE05G1578 Ceratophyllum demersum HOM05D000862 ORTHO05D000943 2.1e-07 60.5 104 38.5
Ciclev10026553m.g Citrus clementina HOM05D000862 ORTHO05D000943 2.1e-07 60.5 106 35.8
HanXRQChr09g0275571 Helianthus annuus HOM05D000862 ORTHO05D000943 2.1e-07 60.5 118 33.9
HanXRQChr16g0499801 Helianthus annuus HOM05D000862 ORTHO05D000943 2.1e-07 60.5 118 33.9
Manes.18G021800 Manihot esculenta HOM05D000862 ORTHO05D000943 2.1e-07 60.5 117 33.3
Psat5g157920 Pisum sativum HOM05D000862 ORTHO05D000943 2.1e-07 60.5 96 39.6
Prupe.1G372900 Prunus persica HOM05D000862 ORTHO05D000943 2.1e-07 60.5 96 39.6
Atru.chr1.3615 Acer truncatum HOM05D000862 ORTHO05D000943 2.8e-07 60.1 107 32.7
ATR0789G103 Amborella trichopoda HOM05D000862 ORTHO05D000943 2.8e-07 60.1 104 35.6
Carub.0001s1926 Capsella rubella HOM05D000862 ORTHO05D000943 2.8e-07 60.1 97 39.2
arahy.Tifrunner.gnm1.ann1.8VYI8C Arachis hypogaea HOM05D000862 ORTHO05D000943 3.6e-07 59.7 96 38.5
BcaB07g31985 Brassica carinata HOM05D000862 ORTHO05D000943 3.6e-07 59.7 96 37.5
A06p15840 Brassica napus HOM05D000862 ORTHO05D000943 3.6e-07 59.7 96 37.5
C05p18160 Brassica napus HOM05D000862 ORTHO05D000003 3.6e-07 59.7 96 37.5
BolC5t30523H Brassica oleracea HOM05D000862 ORTHO05D000003 3.6e-07 59.7 96 37.5
BraA06t24694Z Brassica rapa HOM05D000862 ORTHO05D000943 3.6e-07 59.7 96 37.5
CsaV3_2G029090 Cucumis sativus L. HOM05D000862 ORTHO05D000943 3.6e-07 59.7 95 36.8
Glyma.18G061800 Glycine max HOM05D000862 ORTHO05D000943 3.6e-07 59.7 96 39.6
Medtr2g100595 Medicago truncatula HOM05D000862 ORTHO05D000943 3.6e-07 59.7 106 35.8
Sopen03g040110 Solanum pennellii HOM05D000862 ORTHO05D000943 3.6e-07 59.7 106 34.9
TAR624G1090 Trochodendron aralioides HOM05D000862 ORTHO05D000943 3.6e-07 59.7 104 34.6
arahy.Tifrunner.gnm1.ann1.VI7NX3 Arachis hypogaea HOM05D000862 ORTHO05D000943 4.7e-07 59.3 96 38.5
AUR62022297 Chenopodium quinoa HOM05D000862 ORTHO05D000943 4.7e-07 59.3 106 35.8
FvH4_6g32850 Fragaria vesca HOM05D000862 ORTHO05D000943 4.7e-07 59.3 105 37.1
FAN14G2250 Fragaria x ananassa HOM05D000862 ORTHO05D000943 4.7e-07 59.3 105 37.1
Glyma.11G173800 Glycine max HOM05D000862 ORTHO05D000943 4.7e-07 59.3 96 38.5
PSO407G0149 Papaver somniferum HOM05D000862 ORTHO05D000943 4.7e-07 59.3 78 47.4
VMungo0540G1698 Vigna mungo HOM05D000862 ORTHO05D000943 4.7e-07 59.3 95 35.8
Actinidia09016 Actinidia chinensis HOM05D000862 ORTHO05D000943 6.1e-07 58.9 127 32.3
BolC8t49606H Brassica oleracea HOM05D000862 ORTHO05D000943 6.1e-07 58.9 97 38.1
BraA08t34905Z Brassica rapa HOM05D000862 ORTHO05D000943 6.1e-07 58.9 97 38.1
Ca_05614_v3 Cicer arietinum L. HOM05D000862 ORTHO05D000003 6.1e-07 58.9 96 36.5
COL.COLO4_26231 Corchorus olitorius HOM05D000862 ORTHO05D000943 6.1e-07 58.9 96 37.5
FAN03G2910 Fragaria x ananassa HOM05D000862 ORTHO05D000943 6.1e-07 58.9 104 36.5
FAN05G3307 Fragaria x ananassa HOM05D000862 ORTHO05D000943 6.1e-07 58.9 104 36.5
Gohir.A05G189750 Gossypium hirsutum HOM05D000862 ORTHO05D000943 6.1e-07 58.9 96 40.6
Lj6g0003682 Lotus japonicus HOM05D000862 ORTHO05D000943 6.1e-07 58.9 96 39.6
LjContig00155g0010021 Lotus japonicus HOM05D000862 ORTHO05D000943 6.1e-07 58.9 96 36.5
Medtr3g464370 Medicago truncatula HOM05D000862 ORTHO05D000943 6.1e-07 58.9 96 37.5
Psat2g057640 Pisum sativum HOM05D000862 ORTHO05D000943 6.1e-07 58.9 96 36.5
Potri.005G232500 Populus trichocarpa HOM05D000862 ORTHO05D000943 6.1e-07 58.9 98 37.8
RcHm_v2.0_Chr6g0301821 Rosa chinensis HOM05D000862 ORTHO05D000943 6.1e-07 58.9 96 39.6
Thecc.06G106600 Theobroma cacao HOM05D000862 ORTHO05D000943 6.1e-07 58.9 106 34.0
TPR.G34586 Trifolium pratense HOM05D000862 ORTHO05D000943 6.1e-07 58.9 95 35.8
A08p29700 Brassica napus HOM05D000862 ORTHO05D000943 8.0e-07 58.5 97 38.1
Cfa019214 Carpinus fangiana HOM05D003157 ORTHO05D004447 8.0e-07 58.5 104 34.6
BcaB03g12902 Brassica carinata HOM05D000862 ORTHO05D000943 1.0e-06 58.2 97 38.1
BraA02t06881Z Brassica rapa HOM05D000862 ORTHO05D000943 1.0e-06 58.2 147 29.3
COL.COLO4_30594 Corchorus olitorius HOM05D000862 ORTHO05D000943 1.0e-06 58.2 106 32.1
HanXRQChr09g0276011 Helianthus annuus HOM05D000862 ORTHO05D000943 1.0e-06 58.2 108 32.4
MD15G1021200 Malus domestica HOM05D000862 ORTHO05D000943 1.0e-06 58.2 98 37.8
Os05g0508400 Oryza sativa ssp. japonica HOM05D000862 ORTHO05D000943 1.0e-06 58.2 117 30.8
QL02p010229 Quercus lobata HOM05D000862 ORTHO05D000943 1.0e-06 58.2 96 39.6
PGSC0003DMG402002599 Solanum tuberosum HOM05D000862 ORTHO05D000943 1.0e-06 58.2 106 34.0
VMungo0647G0143 Vigna mungo HOM05D000862 ORTHO05D000943 1.0e-06 58.2 97 37.1
CDE06G0412 Ceratophyllum demersum HOM05D000862 ORTHO05D000943 1.4e-06 57.8 104 35.6
Glyma.15G022500 Glycine max HOM05D000862 ORTHO05D000943 1.4e-06 57.8 106 34.9
Manes.04G136900 Manihot esculenta HOM05D000862 ORTHO05D000943 1.4e-06 57.8 129 31.8
Haze_22550 Corylus avellana HOM05D000862 ORTHO05D000943 1.8e-06 57.4 96 38.5
Gohir.D05G193050 Gossypium hirsutum HOM05D000862 ORTHO05D000943 1.8e-06 57.4 96 40.6
Gorai.009G198200 Gossypium raimondii HOM05D000862 ORTHO05D000003 1.8e-06 57.4 96 40.6
Lsat_1_v5_gn_4_96261 Lactuca sativa HOM05D000862 ORTHO05D000943 1.8e-06 57.4 104 35.6
Lj1C1150G8 Lonicera japonica HOM05D000862 ORTHO05D000943 1.8e-06 57.4 153 28.8
Nn6g35392 Nelumbo nucifera HOM05D000862 ORTHO05D000943 1.8e-06 57.4 106 34.0
THA.LOC104809315 Tarenaya hassleriana HOM05D000862 ORTHO05D000943 1.8e-06 57.4 98 37.8
Duzib235G0072 Durio zibethinus HOM05D000862 ORTHO05D000943 2.3e-06 57.0 106 32.1
Gohir.D10G064300 Gossypium hirsutum HOM05D000862 ORTHO05D000943 2.3e-06 57.0 106 33.0
Aqoxy7G03933 Aquilegia oxysepala HOM05D000862 ORTHO05D000943 3.0e-06 56.6 107 30.8
arahy.Tifrunner.gnm1.ann1.0CQZ6Z Arachis hypogaea HOM05D000862 ORTHO05D000003 3.0e-06 56.6 96 36.5
arahy.Tifrunner.gnm1.ann1.R4H24K Arachis hypogaea HOM05D000862 ORTHO05D000003 3.0e-06 56.6 96 36.5
C08p19700 Brassica napus HOM05D000862 ORTHO05D000943 3.0e-06 56.6 97 37.1
CANSAT25G1772 Cannabis sativa HOM05D000862 ORTHO05D000943 3.0e-06 56.6 97 38.1
AUR62023892 Chenopodium quinoa HOM05D000862 ORTHO05D000943 3.0e-06 56.6 106 34.0
Gohir.A10G062600 Gossypium hirsutum HOM05D000862 ORTHO05D000943 3.0e-06 56.6 106 33.0
Gorai.011G068300 Gossypium raimondii HOM05D000862 ORTHO05D000943 3.0e-06 56.6 106 33.0
HanXRQChr09g0275561 Helianthus annuus HOM05D000862 ORTHO05D000943 3.0e-06 56.6 104 32.7
Potri.005G232400 Populus trichocarpa HOM05D000862 ORTHO05D000943 3.0e-06 56.6 97 39.2
TAR497G0010 Trochodendron aralioides HOM05D000862 ORTHO05D000943 3.0e-06 56.6 104 33.7
AT1G73040 Arabidopsis thaliana HOM05D000862 ORTHO05D000943 4.0e-06 56.2 108 30.6
EL10Ac9g21139 Beta vulgaris HOM05D000862 ORTHO05D000943 4.0e-06 56.2 105 32.4
CiPaw.02G142700 Carya illinoinensis HOM05D000862 ORTHO05D000943 4.0e-06 56.2 105 34.3
FvH4_2g39220 Fragaria vesca HOM05D000862 ORTHO05D000943 4.0e-06 56.2 96 38.5
Gohir.D06G002500 Gossypium hirsutum HOM05D000862 ORTHO05D000943 4.0e-06 56.2 96 38.5
Os01g0775500 Oryza sativa ssp. japonica HOM05D000862 ORTHO05D000943 4.0e-06 56.2 106 32.1
Sed0026682 Sechium edule HOM05D000862 ORTHO05D000943 4.0e-06 56.2 95 34.7
Sc15g0007200 Simmondsia chinensis HOM05D000862 ORTHO05D000943 4.0e-06 56.2 96 39.6
CiPaw.07G156100 Carya illinoinensis HOM05D000862 ORTHO05D000943 5.2e-06 55.8 96 34.4
FAN02G0832 Fragaria x ananassa HOM05D000862 ORTHO05D001182 5.2e-06 55.8 102 36.3
FAN15G3373 Fragaria x ananassa HOM05D000862 ORTHO05D000943 5.2e-06 55.8 96 38.5
Gohir.A06G006900 Gossypium hirsutum HOM05D000862 ORTHO05D000943 5.2e-06 55.8 96 38.5
Gorai.010G007400 Gossypium raimondii HOM05D000862 ORTHO05D000943 5.2e-06 55.8 96 38.5
Medtr5g071200 Medicago truncatula HOM05D000862 ORTHO05D000943 5.2e-06 55.8 96 35.4
Zm00001eb292320 Zea mays HOM05D000862 ORTHO05D000943 5.2e-06 55.8 117 32.5
Ah.12g065430 Amaranthus hybridus HOM05D000862 ORTHO05D000943 6.8e-06 55.5 97 38.1
Glyma.13G352300 Glycine max HOM05D000862 ORTHO05D000943 6.8e-06 55.5 106 34.0
HanXRQChr09g0275601 Helianthus annuus HOM05D000862 ORTHO05D000943 6.8e-06 55.5 104 32.7
Lalb_Chr10g0103371 Lupinus albus HOM05D000862 ORTHO05D000943 6.8e-06 55.5 100 34.0
Rhsim06G0028200 Rhododendron simsii HOM05D000862 ORTHO05D000943 6.8e-06 55.5 108 32.4
Aqoxy5G01522 Aquilegia oxysepala HOM05D000862 ORTHO05D000943 8.9e-06 55.1 106 35.8
EL10Ac1g00598 Beta vulgaris HOM05D000862 ORTHO05D000943 8.9e-06 55.1 101 31.7
BcaC03g15440 Brassica carinata HOM05D000862 ORTHO05D000943 8.9e-06 55.1 107 31.8
BolC2t09101H Brassica oleracea HOM05D000862 ORTHO05D000943 8.9e-06 55.1 107 31.8
Eucgr.F03098 Eucalyptus grandis HOM05D000862 ORTHO05D000943 8.9e-06 55.1 106 34.0
Lj4A33T79 Lonicera japonica HOM05D000862 ORTHO05D000943 8.9e-06 55.1 109 33.0
MBI04_g06212_MAGBIO Magnolia biondii HOM05D000862 ORTHO05D000943 8.9e-06 55.1 108 32.4
Nitab4.5_0000029g0100 Nicotiana tabacum HOM05D000862 ORTHO05D000943 8.9e-06 55.1 97 36.1
Sabra02G0024100 Salix brachista HOM05D000862 ORTHO05D000943 8.9e-06 55.1 96 36.5
SEGI_03652 Sequoiadendron giganteum HOM05D000862 ORTHO05D000943 8.9e-06 55.1 94 36.2
SEGI_31161 Sequoiadendron giganteum HOM05D000862 ORTHO05D000943 8.9e-06 55.1 94 36.2
SEGI_31497 Sequoiadendron giganteum HOM05D003157 ORTHO05D012168 8.9e-06 55.1 132 30.3
TAR497G0005 Trochodendron aralioides HOM05D000862 ORTHO05D000943 8.9e-06 55.1 104 30.8


User provided reference genes

Program Settings