Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_08519 Sequoiadendron giganteum HOM05D004841 ORTHO05D005874 3.3e-215 751.5 400 100.0
GSVIVG01034157001 Vitis vinifera HOM05D004841 ORTHO05D005874 1.8e-88 330.5 342 47.4
Rhsim13G0116700 Rhododendron simsii HOM05D004841 ORTHO05D005874 4.4e-87 325.9 362 45.6
CSS0019612 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 3.8e-86 322.8 343 46.9
CSS0027900 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 3.8e-86 322.8 343 46.9
Lj2A321T65 Lonicera japonica HOM05D004841 ORTHO05D005874 4.2e-85 319.3 338 48.5
TAR628G1076 Trochodendron aralioides HOM05D004841 ORTHO05D005874 5.4e-85 318.9 343 46.4
Lj6g0003285 Lotus japonicus HOM05D004841 ORTHO05D005874 2.1e-84 317.0 343 45.8
Nn3g20436 Nelumbo nucifera HOM05D004841 ORTHO05D005874 2.7e-84 316.6 343 45.5
ECA234G4271 Erigeron canadensis HOM05D004841 ORTHO05D005874 3.5e-84 316.2 343 44.6
Hma1.2p1_0594F.1_g185890 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 3.5e-84 316.2 343 44.3
PSO541G1633 Papaver somniferum HOM05D004841 ORTHO05D005874 3.5e-84 316.2 356 47.2
PSO675G7289 Papaver somniferum HOM05D004841 ORTHO05D005874 3.5e-84 316.2 356 47.2
vmacro03353 Vaccinium macrocarpon HOM05D004841 ORTHO05D005874 3.5e-84 316.2 352 44.6
HanXRQChr17g0564621 Helianthus annuus HOM05D004841 ORTHO05D005874 3.9e-83 312.8 352 46.3
MSTRG.7507 Avicennia marina HOM05D004841 ORTHO05D005874 6.6e-83 312.0 343 44.0
Sed0021741 Sechium edule HOM05D004841 ORTHO05D005874 6.6e-83 312.0 372 44.1
Nitab4.5_0000501g0020 Nicotiana tabacum HOM05D004841 ORTHO05D005874 8.7e-83 311.6 343 45.2
Medtr2g049300 Medicago truncatula HOM05D004841 ORTHO05D005874 1.5e-82 310.8 351 44.4
Sopen02g023650 Solanum pennellii HOM05D004841 ORTHO05D005874 1.9e-82 310.5 343 44.6
TWI63G0939 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 2.5e-82 310.1 343 45.5
Lalb_Chr11g0073321 Lupinus albus HOM05D004841 ORTHO05D005874 3.3e-82 309.7 355 45.9
Oeu013128.1 Olea europaea HOM05D004841 ORTHO05D005874 4.3e-82 309.3 369 44.2
CANSAT11G1247 Cannabis sativa HOM05D004841 ORTHO05D005874 9.6e-82 308.1 343 44.6
MBI02_g29870_MAGBIO Magnolia biondii HOM05D004841 ORTHO05D005874 9.6e-82 308.1 345 45.2
PGSC0003DMG400022420 Solanum tuberosum HOM05D004841 ORTHO05D005874 1.3e-81 307.8 343 44.3
Solyc02g078830.4 Solanum lycopersicum HOM05D004841 ORTHO05D005874 1.6e-81 307.4 343 44.3
SGA_v2.0_scaffold146G36131 Striga asiatica HOM05D004841 ORTHO05D005874 2.1e-81 307.0 338 46.2
Psat1g020080 Pisum sativum HOM05D004841 ORTHO05D005874 2.8e-81 306.6 359 44.0
QL05p055481 Quercus lobata HOM05D004841 ORTHO05D005874 2.8e-81 306.6 348 44.5
TPR.G29935 Trifolium pratense HOM05D004841 ORTHO05D005874 2.8e-81 306.6 367 43.3
Lsat_1_v5_gn_4_29561 Lactuca sativa HOM05D004841 ORTHO05D005874 3.6e-81 306.2 364 45.1
Nitab4.5_0004020g0010 Nicotiana tabacum HOM05D004841 ORTHO05D005874 3.6e-81 306.2 343 44.3
Prupe.4G084200 Prunus persica HOM05D004841 ORTHO05D005874 3.6e-81 306.2 351 43.6
PSO017G5522 Papaver somniferum HOM05D004841 ORTHO05D005874 4.8e-81 305.8 345 45.5
Ca_03447_v3 Cicer arietinum L. HOM05D004841 ORTHO05D005874 8.1e-81 305.1 359 44.3
TWI34G1122 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 8.1e-81 305.1 356 43.8
arahy.Tifrunner.gnm1.ann1.0DR3QG Arachis hypogaea HOM05D004841 ORTHO05D005874 1.4e-80 304.3 348 44.8
arahy.Tifrunner.gnm1.ann1.9IA9LY Arachis hypogaea HOM05D004841 ORTHO05D005874 2.4e-80 303.5 339 45.7
Eucgr.E02427 Eucalyptus grandis HOM05D004841 ORTHO05D005874 2.4e-80 303.5 344 43.3
Cc02_g29720 Coffea canephora HOM05D004841 ORTHO05D005874 4.0e-80 302.8 341 44.3
Peaxi162Scf00465g00119 Petunia axillaris HOM05D004841 ORTHO05D005874 5.3e-80 302.4 342 43.9
Aqoxy5G03944 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 6.9e-80 302.0 376 42.8
Mapoly0001s0498 Marchantia polymorpha HOM05D004841 ORTHO05D005874 6.9e-80 302.0 402 41.3
Sc02g0001540 Simmondsia chinensis HOM05D004841 ORTHO05D005874 6.9e-80 302.0 338 45.0
Migut.M00886 Erythranthe guttata HOM05D004841 ORTHO05D005874 9.0e-80 301.6 352 43.2
arahy.Tifrunner.gnm1.ann1.4L8DWS Arachis hypogaea HOM05D004841 ORTHO05D005874 2.6e-79 300.1 352 44.0
arahy.Tifrunner.gnm1.ann1.V1DCF9 Arachis hypogaea HOM05D004841 ORTHO05D005874 4.5e-79 299.3 339 45.4
DCAR_027897 Daucus carota HOM05D004841 ORTHO05D005874 4.5e-79 299.3 342 45.0
MD05G1280700 Malus domestica HOM05D004841 ORTHO05D005874 5.8e-79 298.9 343 42.3
Manes.17G073300 Manihot esculenta HOM05D004841 ORTHO05D005874 7.6e-79 298.5 364 43.7
RcHm_v2.0_Chr5g0014571 Rosa chinensis HOM05D004841 ORTHO05D005874 9.9e-79 298.1 344 42.7
Cfa000914 Carpinus fangiana HOM05D004841 ORTHO05D005874 1.3e-78 297.7 368 42.9
MELO3C007114.2 Cucumis melo HOM05D004841 ORTHO05D005874 1.3e-78 297.7 354 43.5
Aqoxy7G03441 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 1.7e-78 297.4 339 44.8
MD10G1259100 Malus domestica HOM05D004841 ORTHO05D005874 1.7e-78 297.4 343 42.0
CsaV3_6G051930 Cucumis sativus L. HOM05D004841 ORTHO05D005874 2.9e-78 296.6 354 43.2
PGR031G1170 Punica granatum HOM05D004841 ORTHO05D005874 3.8e-78 296.2 351 44.4
Atru.chr10.1099 Acer truncatum HOM05D004841 ORTHO05D005874 1.1e-77 294.7 344 43.3
HPP92_012189 Vanilla planifolia HOM05D004841 ORTHO05D005874 1.9e-77 293.9 339 43.1
FAN16G1445 Fragaria x ananassa HOM05D004841 ORTHO05D005874 7.1e-77 292.0 368 41.3
Haze_05641 Corylus avellana HOM05D004841 ORTHO05D005874 1.2e-76 291.2 366 43.2
Gohir.A10G042800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 1.6e-76 290.8 343 45.5
FAN16G2733 Fragaria x ananassa HOM05D004841 ORTHO05D005874 2.1e-76 290.4 344 42.2
FAN11G3214 Fragaria x ananassa HOM05D004841 ORTHO05D005874 2.7e-76 290.0 365 41.4
FAN25G3271 Fragaria x ananassa HOM05D004841 ORTHO05D005874 2.7e-76 290.0 365 41.4
FAN21G1690 Fragaria x ananassa HOM05D004841 ORTHO05D005874 4.6e-76 289.3 365 41.1
Gorai.011G046600 Gossypium raimondii HOM05D004841 ORTHO05D005874 6.0e-76 288.9 343 44.9
ATR0772G214 Amborella trichopoda HOM05D004841 ORTHO05D005874 7.9e-76 288.5 397 42.1
FvH4_3g05180 Fragaria vesca HOM05D004841 ORTHO05D005874 7.9e-76 288.5 365 41.1
Gohir.D10G043800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 7.9e-76 288.5 343 44.9
CiPaw.10G089600 Carya illinoinensis HOM05D004841 ORTHO05D005874 1.0e-75 288.1 345 42.9
Ah.08g211520 Amaranthus hybridus HOM05D004841 ORTHO05D005874 1.8e-75 287.3 356 42.4
Carub.0002s1024 Capsella rubella HOM05D004841 ORTHO05D005874 2.3e-75 287.0 347 43.8
AT1G65030 Arabidopsis thaliana HOM05D004841 ORTHO05D005874 3.9e-75 286.2 347 43.5
EL10Ac7g16662 Beta vulgaris HOM05D004841 ORTHO05D005874 3.9e-75 286.2 352 41.5
Ciclev10015824m.g Citrus clementina HOM05D004841 ORTHO05D005874 5.1e-75 285.8 361 42.1
AL2G19660 Arabidopsis lyrata HOM05D004841 ORTHO05D005874 8.7e-75 285.0 366 42.3
Hund20587 Selenicereus undatus HOM05D004841 ORTHO05D005874 1.1e-74 284.6 357 42.6
BcaB03g15189 Brassica carinata HOM05D004841 ORTHO05D005874 1.5e-74 284.3 347 43.2
COL.COLO4_31030 Corchorus olitorius HOM05D004841 ORTHO05D005874 1.5e-74 284.3 343 44.6
Potri.012G107400 Populus trichocarpa HOM05D004841 ORTHO05D005874 1.5e-74 284.3 339 43.4
Duzib235G0160 Durio zibethinus HOM05D004841 ORTHO05D005874 1.9e-74 283.9 343 43.1
BcaB05g24290 Brassica carinata HOM05D004841 ORTHO05D005874 2.5e-74 283.5 347 43.2
Sabra13G0019700 Salix brachista HOM05D000092 ORTHO05D005874 2.5e-74 283.5 340 42.6
Actinidia01573 Actinidia chinensis HOM05D004841 ORTHO05D005874 3.3e-74 283.1 364 41.2
C06p42730 Brassica napus HOM05D004841 ORTHO05D005874 5.6e-74 282.3 347 42.9
Phvul.009G215400 Phaseolus vulgaris HOM05D004841 ORTHO05D005874 7.4e-74 282.0 359 41.2
Dinv21532 Davidia involucrata HOM05D004841 ORTHO05D005874 1.3e-73 281.2 343 41.4
THA.LOC104821761 Tarenaya hassleriana HOM05D004841 ORTHO05D005874 1.6e-73 280.8 347 42.7
Thecc.06G146500 Theobroma cacao HOM05D004841 ORTHO05D005874 1.6e-73 280.8 343 43.1
BraA02t06489Z Brassica rapa HOM05D004841 ORTHO05D005874 3.7e-73 279.6 347 42.7
Sp5g22530 Schrenkiella parvula HOM05D004841 ORTHO05D005874 6.2e-73 278.9 347 42.1
A07p34060 Brassica napus HOM05D004841 ORTHO05D005874 8.1e-73 278.5 347 42.4
CiPaw.09G120900 Carya illinoinensis HOM05D004841 ORTHO05D005874 8.1e-73 278.5 363 41.0
VMungo1309G2918 Vigna mungo HOM05D004841 ORTHO05D005874 1.1e-72 278.1 391 39.1
Thhalv10018816m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 1.4e-72 277.7 347 42.4
BraA07t31032Z Brassica rapa HOM05D004841 ORTHO05D005874 1.8e-72 277.3 347 42.4
Glyma.15G195000 Glycine max HOM05D004841 ORTHO05D005874 1.8e-72 277.3 359 42.1
A02p14280 Brassica napus HOM05D004841 ORTHO05D005874 2.4e-72 276.9 347 42.1
C06p42780 Brassica napus HOM05D004841 ORTHO05D005874 3.1e-72 276.6 347 42.4
C02p23090 Brassica napus HOM05D004841 ORTHO05D005874 5.3e-72 275.8 347 42.7
BolC2t08451H Brassica oleracea HOM05D004841 ORTHO05D005874 1.5e-71 274.2 347 42.4
CARHR056500 Cardamine hirsuta HOM05D004841 ORTHO05D005874 3.4e-71 273.1 347 41.5
Aa31LG2G2230 Aethionema arabicum HOM05D004841 ORTHO05D005874 7.6e-71 271.9 364 40.1
Glyma.09G086200 Glycine max HOM05D004841 ORTHO05D005874 4.9e-70 269.2 339 40.7
BolC6t39162H Brassica oleracea HOM05D004841 ORTHO05D005874 6.5e-70 268.9 376 40.2
BcaNung05075 Brassica carinata HOM05D004841 ORTHO05D005874 1.1e-69 268.1 347 42.9
SHI02861 Sapria himalayana HOM05D004841 ORTHO05D005874 3.2e-69 266.5 290 47.2
SalBow8G2637 Salvia bowleyana HOM05D004841 ORTHO05D005874 9.3e-69 265.0 343 42.3
Dinv32222 Davidia involucrata HOM05D004841 ORTHO05D005874 2.7e-68 263.5 285 46.7
ClCG01G024810 Citrullus lanatus HOM05D004841 ORTHO05D005874 1.5e-66 257.7 368 39.1
SMO358G0291 Selaginella moellendorffii HOM05D004841 ORTHO05D005874 4.8e-65 252.7 335 39.4
Zm00001eb328580 Zea mays HOM05D004841 ORTHO05D005874 1.0e-62 245.0 344 38.7
AUR62026924 Chenopodium quinoa HOM05D004841 ORTHO05D005874 2.1e-60 237.3 260 45.4
Os12g0615900 Oryza sativa ssp. japonica HOM05D004841 ORTHO05D005874 7.4e-50 202.2 260 41.2
Cre03.g205800 Chlamydomonas reinhardtii HOM05D004841 ORTHO05D005874 4.8e-49 199.5 349 34.1
CBR_g4467 Chara braunii HOM05D004841 ORTHO05D005874 6.9e-48 195.7 268 36.6
Pp3c9_24890 Physcomitrium patens HOM05D004841 ORTHO05D005874 4.1e-40 169.9 231 42.0
Pp3c15_25070 Physcomitrium patens HOM05D004841 ORTHO05D005874 3.8e-38 163.3 180 46.1
CDE07G1158 Ceratophyllum demersum HOM05D004841 ORTHO05D005874 7.2e-37 159.1 249 35.3
BcaNung05071 Brassica carinata HOM05D004841 ORTHO05D005874 6.7e-35 152.5 172 43.0
BcaNung05072 Brassica carinata HOM05D004841 ORTHO05D005874 6.7e-35 152.5 172 43.0
AUR62042056 Chenopodium quinoa HOM05D004841 ORTHO05D005874 1.5e-34 151.4 193 40.4
unitig_749.g13802 Utricularia gibba HOM05D004841 ORTHO05D005874 2.2e-33 147.5 180 43.3
AagrBONN_evm.TU.Sc2ySwM_117.2336 Anthoceros agrestis HOM05D004841 ORTHO05D005874 3.5e-31 140.2 199 38.7
Sabra13G0018400 Salix brachista HOM05D004841 ORTHO05D004358 5.0e-30 136.3 151 46.4
MCO15G572 Micromonas commoda HOM05D004841 ORTHO05D005874 1.9e-29 134.4 366 26.8
Cpa.g.sc17.34 Carica papaya HOM05D004841 ORTHO05D005874 1.2e-28 131.7 131 47.3
ATR1098G095 Amborella trichopoda HOM05D004841 ORTHO05D005874 2.6e-26 124.0 168 36.3
Oeu062572.1 Olea europaea HOM05D004841 ORTHO05D005874 3.4e-26 123.6 134 44.0
unitig_749.g13803 Utricularia gibba HOM05D004841 ORTHO05D005874 9.8e-26 122.1 119 47.1
Hma1.2p1_0594F.1_g185900 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 1.0e-22 112.1 98 49.0
Sabra13G0018300 Salix brachista HOM05D004841 ORTHO05D005874 1.7e-22 111.3 104 48.1
Sabra13G0014000 Salix brachista HOM05D000092 ORTHO05D000042 1.1e-21 108.6 99 49.5
C06p41890 Brassica napus HOM05D004841 ORTHO05D005874 2.5e-21 107.5 128 42.2
Sabra13G0014300 Salix brachista HOM05D004841 ORTHO05D005874 4.2e-21 106.7 101 47.5
Sabra13G0014700 Salix brachista HOM05D000070 ORTHO05D000047 7.2e-21 105.9 99 48.5
Sabra13G0015400 Salix brachista HOM05D004841 ORTHO05D005874 7.2e-21 105.9 123 43.9
BolC6t39240H Brassica oleracea HOM05D004841 ORTHO05D005874 4.7e-20 103.2 103 45.6
Sabra13G0015100 Salix brachista HOM05D004841 ORTHO05D005874 9.2e-16 89.0 85 47.1
Sabra13G0019300 Salix brachista HOM05D004841 ORTHO05D005874 9.2e-16 89.0 85 47.1
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 3.5e-15 87.0 125 34.4
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 1.3e-14 85.1 124 34.7
Cpa.g.c47956 Carica papaya HOM05D004841 ORTHO05D005874 2.3e-14 84.3 99 40.4
Sed0005148 Sechium edule HOM05D000836 ORTHO05D000709 1.9e-13 81.3 277 28.9
Sed0026236 Sechium edule HOM05D000836 ORTHO05D000709 3.6e-12 77.0 279 27.2
Oeu030952.1 Olea europaea HOM05D004841 ORTHO05D005874 2.3e-11 74.3 155 29.7
VMungo1382G0002 Vigna mungo HOM05D004841 ORTHO05D005874 2.6e-10 70.9 106 34.0
Thhalv10019798m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 4.4e-10 70.1 82 42.7
SGA_v2.0_scaffold27G11468 Striga asiatica HOM05D000836 ORTHO05D000709 2.2e-09 67.8 176 29.5
Cc11_g01330 Coffea canephora HOM05D000836 ORTHO05D000709 3.7e-09 67.0 203 28.1
Gohir.D06G047400 Gossypium hirsutum HOM05D000836 ORTHO05D000709 4.9e-09 66.6 203 27.1
Gorai.010G053000 Gossypium raimondii HOM05D000836 ORTHO05D000709 4.9e-09 66.6 203 27.1
Gohir.A06G047100 Gossypium hirsutum HOM05D000836 ORTHO05D000709 6.4e-09 66.2 203 27.1
SGA_v2.0_scaffold448G51776 Striga asiatica HOM05D000836 ORTHO05D000709 1.1e-08 65.5 176 30.1
Duzib268G1331 Durio zibethinus HOM05D000836 ORTHO05D000709 1.4e-08 65.1 284 23.9
Dinv30201 Davidia involucrata HOM05D000836 ORTHO05D000709 1.8e-08 64.7 227 27.8
unitig_748.g7364 Utricularia gibba HOM05D000836 ORTHO05D000709 2.4e-08 64.3 202 27.2
VMungo0331G1481 Vigna mungo HOM05D004841 ORTHO05D005874 2.4e-08 64.3 98 36.7
MBI05_g03452_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 3.2e-08 63.9 228 28.1
FAN17G0254 Fragaria x ananassa HOM05D000836 ORTHO05D000709 7.0e-08 62.8 295 23.7
Ciclev10004358m.g Citrus clementina HOM05D000836 ORTHO05D000709 1.2e-07 62.0 281 24.2
Thecc.04G205800 Theobroma cacao HOM05D000836 ORTHO05D000709 1.2e-07 62.0 283 23.3
FAN22G1004 Fragaria x ananassa HOM05D000836 ORTHO05D000709 3.5e-07 60.5 256 23.4
Oeu030951.1 Olea europaea HOM05D004841 ORTHO05D005874 5.9e-07 59.7 89 37.1
Phvul.006G027500 Phaseolus vulgaris HOM05D001610 ORTHO05D001585 1.0e-06 58.9 225 22.7
Oeu051308.2 Olea europaea HOM05D005151 ORTHO05D006322 1.3e-06 58.5 210 26.2
Cfa018669 Carpinus fangiana HOM05D001610 ORTHO05D001585 3.0e-06 57.4 199 21.1
Haze_17396 Corylus avellana HOM05D001610 ORTHO05D001585 3.9e-06 57.0 199 21.1
Dinv35513 Davidia involucrata HOM05D007125 ORTHO05D008766 3.9e-06 57.0 116 31.0
SGA_v2.0_scaffold1G00745 Striga asiatica HOM05D000836 ORTHO05D000709 3.9e-06 57.0 204 26.0
CsaV3_1G000890 Cucumis sativus L. HOM05D000453 ORTHO05D000387 6.6e-06 56.2 268 20.9
Glyma.18G114800 Glycine max HOM05D001610 ORTHO05D001585 8.6e-06 55.8 221 22.2
Gohir.D01G023421 Gossypium hirsutum HOM05D003335 ORTHO05D003853 8.6e-06 55.8 291 22.3
Prupe.1G352100 Prunus persica HOM05D001610 ORTHO05D001585 8.6e-06 55.8 271 18.8


User provided reference genes

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