Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_07514 Sequoiadendron giganteum HOM05D008124 ORTHO05D004072 7.5e-125 451.1 325 100.0
SEGI_33947 Sequoiadendron giganteum HOM05D008124 ORTHO05D004072 7.4e-24 115.5 81 66.7
Os03g0786500 Oryza sativa ssp. japonica HOM05D008124 ORTHO05D004072 9.1e-14 82.0 200 29.0
Zm00001eb059980 Zea mays HOM05D008124 ORTHO05D004072 5.9e-13 79.3 201 30.3
Carub.0005s0890 Capsella rubella HOM05D008124 ORTHO05D004072 5.0e-12 76.3 199 28.1
Aqoxy5G03036 Aquilegia oxysepala HOM05D007742 ORTHO05D004072 5.5e-11 72.8 174 28.2
AagrBONN_evm.TU.Sc2ySwM_228.5614 Anthoceros agrestis HOM05D008124 ORTHO05D004072 8.0e-10 68.9 195 27.7
Nn4g26556 Nelumbo nucifera HOM05D008124 ORTHO05D004072 8.0e-10 68.9 58 50.0
HPP92_017732 Vanilla planifolia HOM05D008124 ORTHO05D004072 1.4e-09 68.2 186 27.4
Manes.09G074700 Manihot esculenta HOM05D008124 ORTHO05D004072 2.3e-09 67.4 118 38.1
TWI60G0051 Tripterygium wilfordii HOM05D008124 ORTHO05D004072 3.0e-09 67.0 79 44.3
CANSAT64G0620 Cannabis sativa HOM05D008124 ORTHO05D004072 6.7e-09 65.9 61 45.9
EL10Ac9g22884 Beta vulgaris HOM05D008124 ORTHO05D004072 8.8e-09 65.5 51 49.0
Eucgr.K01332 Eucalyptus grandis HOM05D008124 ORTHO05D004072 8.8e-09 65.5 54 46.3
PSO541G0277 Papaver somniferum HOM05D008124 ORTHO05D004072 8.8e-09 65.5 67 43.3
TAR627G0754 Trochodendron aralioides HOM05D008124 ORTHO05D004072 8.8e-09 65.5 58 46.6
Cfa000684 Carpinus fangiana HOM05D008124 ORTHO05D004072 1.2e-08 65.1 40 60.0
Haze_06124 Corylus avellana HOM05D008124 ORTHO05D004072 1.2e-08 65.1 40 60.0
THA.LOC104810998 Tarenaya hassleriana HOM05D008124 ORTHO05D004072 1.2e-08 65.1 55 47.3
AUR62017629 Chenopodium quinoa HOM05D008124 ORTHO05D004072 1.5e-08 64.7 74 39.2
Dinv20269 Davidia involucrata HOM05D008124 ORTHO05D004072 1.5e-08 64.7 58 46.6
Gohir.A06G110400 Gossypium hirsutum HOM05D008124 ORTHO05D004072 1.5e-08 64.7 46 50.0
PGR004G0249 Punica granatum HOM05D008124 ORTHO05D004072 1.5e-08 64.7 70 38.6
Sed0004202 Sechium edule HOM05D008124 ORTHO05D004072 1.5e-08 64.7 70 40.0
CAN.G134.65 Capsicum annuum HOM05D008124 ORTHO05D004072 2.0e-08 64.3 76 40.8
AUR62015176 Chenopodium quinoa HOM05D008124 ORTHO05D004072 2.0e-08 64.3 74 39.2
Peaxi162Scf00647g00014 Petunia axillaris HOM05D008124 ORTHO05D004072 2.0e-08 64.3 58 51.7
AT3G42860 Arabidopsis thaliana HOM05D008124 ORTHO05D004072 3.3e-08 63.5 58 46.6
FvH4_6g39844 Fragaria vesca HOM05D008124 ORTHO05D004072 3.3e-08 63.5 62 38.7
FAN14G4038 Fragaria x ananassa HOM05D000027 ORTHO05D004072 3.3e-08 63.5 62 38.7
Solyc01g097070.4 Solanum lycopersicum HOM05D008124 ORTHO05D004072 3.3e-08 63.5 41 56.1
Sopen01g040750 Solanum pennellii HOM05D008124 ORTHO05D004072 3.3e-08 63.5 41 56.1
Ah.01g013150 Amaranthus hybridus HOM05D008124 ORTHO05D004072 4.4e-08 63.2 52 50.0
FAN02G4088 Fragaria x ananassa HOM05D008124 ORTHO05D004072 5.7e-08 62.8 60 40.0
Nitab4.5_0005905g0010 Nicotiana tabacum HOM05D008124 ORTHO05D004072 5.7e-08 62.8 58 44.8
RcHm_v2.0_Chr2g0154211 Rosa chinensis HOM05D008124 ORTHO05D004072 5.7e-08 62.8 62 37.1
PGSC0003DMG400027518 Solanum tuberosum HOM05D008124 ORTHO05D004072 5.7e-08 62.8 40 57.5
Nitab4.5_0002247g0100 Nicotiana tabacum HOM05D008124 ORTHO05D004072 7.5e-08 62.4 40 57.5
Rhsim07G0073400 Rhododendron simsii HOM05D008124 ORTHO05D004072 7.5e-08 62.4 40 55.0
TAR374G0633 Trochodendron aralioides HOM05D007742 ORTHO05D004072 7.5e-08 62.4 217 23.0
MBI02_g36352_MAGBIO Magnolia biondii HOM05D008124 ORTHO05D004072 9.7e-08 62.0 40 55.0
GSVIVG01018616001 Vitis vinifera HOM05D008124 ORTHO05D004072 9.7e-08 62.0 54 48.1
CDE02G3354 Ceratophyllum demersum HOM05D008124 ORTHO05D004072 1.3e-07 61.6 40 55.0
MD17G1125500 Malus domestica HOM05D008124 ORTHO05D004072 1.3e-07 61.6 67 40.3
Prupe.3G190200 Prunus persica HOM05D008124 ORTHO05D004072 1.3e-07 61.6 70 37.1
Duzib116G0777 Durio zibethinus HOM05D008124 ORTHO05D004072 1.7e-07 61.2 40 55.0
Thhalv10013799m.g Eutrema salsugineum HOM05D008124 ORTHO05D004072 1.7e-07 61.2 53 45.3
AL5G21140 Arabidopsis lyrata HOM05D008124 ORTHO05D004072 2.8e-07 60.5 56 41.1
Sp6g17920 Schrenkiella parvula HOM05D008124 ORTHO05D004072 2.8e-07 60.5 53 43.4
Sed0023600 Sechium edule HOM05D008124 ORTHO05D004072 2.8e-07 60.5 50 48.0
BcaB07g31107 Brassica carinata HOM05D009880 ORTHO05D004072 3.7e-07 60.1 198 23.7
C09p47180 Brassica napus HOM05D008124 ORTHO05D004072 3.7e-07 60.1 64 37.5
BolC9t57572H Brassica oleracea HOM05D008124 ORTHO05D004072 3.7e-07 60.1 64 37.5
A10p13280 Brassica napus HOM05D008124 ORTHO05D004072 4.8e-07 59.7 64 37.5
BraA10t43425Z Brassica rapa HOM05D008124 ORTHO05D004072 4.8e-07 59.7 64 37.5
Mapoly0141s0028 Marchantia polymorpha HOM05D008124 ORTHO05D004072 4.8e-07 59.7 40 55.0
Prupe.3G314400 Prunus persica HOM05D007742 ORTHO05D004072 6.3e-07 59.3 184 26.1
HPP92_017701 Vanilla planifolia HOM05D008124 ORTHO05D004072 6.3e-07 59.3 51 49.0
ClCG07G010840 Citrullus lanatus HOM05D008124 ORTHO05D004072 8.2e-07 58.9 49 44.9
Cc07_g01390 Coffea canephora HOM05D007742 ORTHO05D004072 8.2e-07 58.9 51 49.0
Cc07_g01400 Coffea canephora HOM05D007742 ORTHO05D004072 8.2e-07 58.9 51 49.0
CsaV3_4G007470 Cucumis sativus L. HOM05D008124 ORTHO05D004072 8.2e-07 58.9 40 50.0
Nn4g22099 Nelumbo nucifera HOM05D007742 ORTHO05D004072 1.8e-06 57.8 67 38.8
BraA09t37545Z Brassica rapa HOM05D009880 ORTHO05D004072 3.1e-06 57.0 181 23.8
Thhalv10013728m.g Eutrema salsugineum HOM05D009880 ORTHO05D004072 3.1e-06 57.0 44 52.3
vmacro18395 Vaccinium macrocarpon HOM05D007742 ORTHO05D004072 4.1e-06 56.6 73 34.2
CARHR152360 Cardamine hirsuta HOM05D008124 ORTHO05D004072 5.3e-06 56.2 57 49.1
Potri.001G318100 Populus trichocarpa HOM05D008124 ORTHO05D004072 5.3e-06 56.2 48 43.8
Hma1.2p1_0868F.1_g230420 Hydrangea macrophylla HOM05D007742 ORTHO05D004072 7.0e-06 55.8 78 34.6
Sabra16G0201300 Salix brachista HOM05D008124 ORTHO05D004072 7.0e-06 55.8 48 43.8
Sp6g30080 Schrenkiella parvula HOM05D009880 ORTHO05D004072 7.0e-06 55.8 80 35.0
C09p24280 Brassica napus HOM05D009880 ORTHO05D004072 9.1e-06 55.5 179 22.3
BolC9t55345H Brassica oleracea HOM05D009880 ORTHO05D004072 9.1e-06 55.5 179 22.3


User provided reference genes

Program Settings