Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_06448 Sequoiadendron giganteum HOM05D003472 ORTHO05D004200 1.3e-78 296.2 143 100.0
ATR0757G010 Amborella trichopoda HOM05D003472 ORTHO05D004200 3.6e-55 218.4 142 71.1
Rhsim08G0015900 Rhododendron simsii HOM05D003472 ORTHO05D004200 2.3e-54 215.7 143 71.3
Actinidia22188 Actinidia chinensis HOM05D003472 ORTHO05D004200 5.2e-54 214.5 143 69.9
Sc01g0010480 Simmondsia chinensis HOM05D003472 ORTHO05D004200 5.2e-54 214.5 143 69.2
MBI12_g15036_MAGBIO Magnolia biondii HOM05D003472 ORTHO05D004200 8.8e-54 213.8 143 69.2
Cfa011959 Carpinus fangiana HOM05D003472 ORTHO05D004200 5.7e-53 211.1 143 67.1
Haze_09134 Corylus avellana HOM05D003472 ORTHO05D004200 7.5e-53 210.7 143 68.5
SEGI_04080 Sequoiadendron giganteum HOM05D003472 ORTHO05D004200 7.5e-53 210.7 141 70.2
Dinv02502 Davidia involucrata HOM05D003472 ORTHO05D004200 1.7e-52 209.5 143 68.5
AUR62007025 Chenopodium quinoa HOM05D003472 ORTHO05D004200 2.8e-52 208.8 143 67.1
vmacro11524 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 3.7e-52 208.4 143 68.5
Rhsim07G0079700 Rhododendron simsii HOM05D003472 ORTHO05D004200 6.3e-52 207.6 143 67.1
Ah.12g052970 Amaranthus hybridus HOM05D003472 ORTHO05D007906 8.2e-52 207.2 143 65.7
CSS0008297 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 1.1e-51 206.8 143 67.8
CSS0044761 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 1.1e-51 206.8 143 67.8
CiPaw.12G079900 Carya illinoinensis HOM05D003472 ORTHO05D004200 1.1e-51 206.8 143 65.0
FAN13G1911 Fragaria x ananassa HOM05D003472 ORTHO05D004200 1.8e-51 206.1 143 67.1
RcHm_v2.0_Chr7g0186361 Rosa chinensis HOM05D003472 ORTHO05D004200 1.8e-51 206.1 143 67.1
HPP92_014452 Vanilla planifolia HOM05D003472 ORTHO05D004200 1.8e-51 206.1 143 65.7
Ciclev10000621m.g Citrus clementina HOM05D003472 ORTHO05D004200 2.4e-51 205.7 143 69.2
Hund11368 Selenicereus undatus HOM05D003472 ORTHO05D004200 5.3e-51 204.5 143 65.7
ECA246G2504 Erigeron canadensis HOM05D003472 ORTHO05D004200 7.0e-51 204.1 143 65.7
Nitab4.5_0002439g0080 Nicotiana tabacum HOM05D003472 ORTHO05D004200 7.0e-51 204.1 143 65.0
FvH4_5g11460 Fragaria vesca HOM05D003472 ORTHO05D004200 9.1e-51 203.8 143 66.4
FAN18G4027 Fragaria x ananassa HOM05D003472 ORTHO05D004200 9.1e-51 203.8 143 66.4
MSTRG.24856 Avicennia marina HOM05D003472 ORTHO05D004200 1.2e-50 203.4 143 66.4
FAN08G2572 Fragaria x ananassa HOM05D003472 ORTHO05D004200 1.2e-50 203.4 143 66.4
Prupe.5G126300 Prunus persica HOM05D003472 ORTHO05D004200 1.2e-50 203.4 143 65.7
DCAR_010023 Daucus carota HOM05D003472 ORTHO05D004200 1.6e-50 203.0 143 65.7
HanXRQChr06g0166301 Helianthus annuus HOM05D003472 ORTHO05D004200 2.0e-50 202.6 143 65.0
Hma1.2p1_1835F.1_g304660 Hydrangea macrophylla HOM05D003472 ORTHO05D004200 2.0e-50 202.6 143 66.4
PGR042G1639 Punica granatum HOM05D003472 ORTHO05D004200 2.0e-50 202.6 142 65.5
vmacro22586 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 2.7e-50 202.2 143 66.4
FAN04G2329 Fragaria x ananassa HOM05D003472 ORTHO05D004200 3.5e-50 201.8 143 65.7
PSO170G3423 Papaver somniferum HOM05D003472 ORTHO05D004200 3.5e-50 201.8 143 66.4
Haze_09126 Corylus avellana HOM05D003472 ORTHO05D004200 5.9e-50 201.1 143 62.9
Migut.I01165 Erythranthe guttata HOM05D003472 ORTHO05D004200 7.7e-50 200.7 143 67.1
Aqoxy5G04302 Aquilegia oxysepala HOM05D003472 ORTHO05D004200 1.0e-49 200.3 143 65.7
CAN.G567.65 Capsicum annuum HOM05D003472 ORTHO05D004200 1.0e-49 200.3 143 65.0
Solyc08g082860.4 Solanum lycopersicum HOM05D003472 ORTHO05D004200 1.0e-49 200.3 142 64.8
Sopen08g031090 Solanum pennellii HOM05D003472 ORTHO05D004200 1.0e-49 200.3 142 64.8
MSTRG.24857 Avicennia marina HOM05D003472 ORTHO05D004200 1.3e-49 199.9 143 64.3
Dinv23367 Davidia involucrata HOM05D003472 ORTHO05D004200 1.3e-49 199.9 145 66.2
MD06G1113500 Malus domestica HOM05D003472 ORTHO05D004200 1.3e-49 199.9 142 64.8
TPR.G3439 Trifolium pratense HOM05D003472 ORTHO05D004200 1.3e-49 199.9 143 65.0
CANSAT21G1016 Cannabis sativa HOM05D003472 ORTHO05D004200 1.7e-49 199.5 144 65.3
Ca_17451_v3 Cicer arietinum L. HOM05D003472 ORTHO05D004200 1.7e-49 199.5 143 64.3
Os10g0521000 Oryza sativa ssp. japonica HOM05D003472 ORTHO05D004200 1.7e-49 199.5 142 66.2
CSS0029461 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 2.2e-49 199.1 149 65.1
Cc08_g16500 Coffea canephora HOM05D003472 ORTHO05D004200 2.2e-49 199.1 143 65.0
TAR629G3421 Trochodendron aralioides HOM05D003472 ORTHO05D004200 2.2e-49 199.1 143 65.0
EL10Ac5g12473 Beta vulgaris HOM05D003472 ORTHO05D004200 2.9e-49 198.7 143 65.0
Sabra01G0063300 Salix brachista HOM05D003472 ORTHO05D004200 2.9e-49 198.7 143 64.3
CiPaw.11G115400 Carya illinoinensis HOM05D003472 ORTHO05D004200 3.8e-49 198.4 143 63.6
Lsat_1_v5_gn_3_12621 Lactuca sativa HOM05D003472 ORTHO05D004200 3.8e-49 198.4 143 64.3
Potri.001G087100 Populus trichocarpa HOM05D003472 ORTHO05D004200 3.8e-49 198.4 143 64.3
QL02p028412 Quercus lobata HOM05D003472 ORTHO05D004200 3.8e-49 198.4 143 62.2
Sabra03G0104400 Salix brachista HOM05D003472 ORTHO05D004200 3.8e-49 198.4 143 64.3
SGA_v2.0_scaffold198G41058 Striga asiatica HOM05D003472 ORTHO05D004200 5.0e-49 198.0 142 68.3
Manes.01G053600 Manihot esculenta HOM05D003472 ORTHO05D004200 6.5e-49 197.6 143 63.6
PGR042G3552 Punica granatum HOM05D003472 ORTHO05D004200 6.5e-49 197.6 143 64.3
PGSC0003DMG400012252 Solanum tuberosum HOM05D003472 ORTHO05D004200 6.5e-49 197.6 142 63.4
GSVIVG01019610001 Vitis vinifera HOM05D003472 ORTHO05D004200 6.5e-49 197.6 143 63.6
CDE04G3265 Ceratophyllum demersum HOM05D003472 ORTHO05D004200 8.5e-49 197.2 143 62.2
CsaV3_5G002020 Cucumis sativus L. HOM05D003472 ORTHO05D004200 8.5e-49 197.2 143 65.7
Potri.003G144000 Populus trichocarpa HOM05D003472 ORTHO05D004200 8.5e-49 197.2 143 63.6
MELO3C005751.2 Cucumis melo HOM05D003472 ORTHO05D004200 1.1e-48 196.8 143 66.4
Manes.02G005400 Manihot esculenta HOM05D003472 ORTHO05D004200 1.1e-48 196.8 143 63.6
Thecc.03G304400 Theobroma cacao HOM05D003472 ORTHO05D004200 1.9e-48 196.1 143 64.3
SalBow6G0547 Salvia bowleyana HOM05D003472 ORTHO05D004200 2.5e-48 195.7 143 65.0
Medtr8g099985 Medicago truncatula HOM05D003472 ORTHO05D004200 5.5e-48 194.5 143 62.9
Sabra03G0104300 Salix brachista HOM05D003472 ORTHO05D004200 5.5e-48 194.5 143 63.6
Gohir.A02G096900 Gossypium hirsutum HOM05D003472 ORTHO05D004200 7.2e-48 194.1 143 62.2
Gorai.003G075200 Gossypium raimondii HOM05D003472 ORTHO05D004200 7.2e-48 194.1 143 62.2
Thecc.03G304700 Theobroma cacao HOM05D003472 ORTHO05D004200 7.2e-48 194.1 143 65.0
unitig_747.g22055 Utricularia gibba HOM05D003472 ORTHO05D004200 7.2e-48 194.1 143 64.3
Gohir.A11G019500 Gossypium hirsutum HOM05D003472 ORTHO05D004200 1.2e-47 193.4 143 62.9
Gohir.D11G019200 Gossypium hirsutum HOM05D003472 ORTHO05D004200 1.2e-47 193.4 143 62.9
Sed0019208 Sechium edule HOM05D003472 ORTHO05D004200 1.6e-47 193.0 143 64.3
Eucgr.E01027 Eucalyptus grandis HOM05D003472 ORTHO05D004200 2.1e-47 192.6 143 64.3
Gorai.007G020500 Gossypium raimondii HOM05D003472 ORTHO05D004200 2.1e-47 192.6 143 62.9
QL02p028420 Quercus lobata HOM05D003472 ORTHO05D004200 2.1e-47 192.6 143 62.2
Ciclev10033306m.g Citrus clementina HOM05D003472 ORTHO05D004200 3.6e-47 191.8 143 65.7
Aqoxy5G04304 Aquilegia oxysepala HOM05D003472 ORTHO05D004200 4.7e-47 191.4 143 63.6
ClCG01G001880 Citrullus lanatus HOM05D003472 ORTHO05D004200 4.7e-47 191.4 145 64.1
Psat7g022760 Pisum sativum HOM05D003472 ORTHO05D004200 4.7e-47 191.4 143 62.9
Potri.003G143900 Populus trichocarpa HOM05D003472 ORTHO05D004200 6.1e-47 191.0 143 62.2
Duzib205G0077 Durio zibethinus HOM05D003472 ORTHO05D004200 8.0e-47 190.7 142 64.1
Phvul.002G301500 Phaseolus vulgaris HOM05D003472 ORTHO05D004200 1.4e-46 189.9 143 62.2
THA.LOC104806447 Tarenaya hassleriana HOM05D003472 ORTHO05D004200 1.4e-46 189.9 143 60.1
Glyma.05G219800 Glycine max HOM05D003472 ORTHO05D004200 2.3e-46 189.1 143 60.8
COL.COLO4_10760 Corchorus olitorius HOM05D003472 ORTHO05D004200 3.0e-46 188.7 143 61.5
PGR031G0912 Punica granatum HOM05D003472 ORTHO05D004200 8.8e-46 187.2 143 63.6
TWI60G0599 Tripterygium wilfordii HOM05D003472 ORTHO05D004200 8.8e-46 187.2 144 60.4
arahy.Tifrunner.gnm1.ann1.5YP9G9 Arachis hypogaea HOM05D003472 ORTHO05D004200 1.5e-45 186.4 143 60.1
BcaNung01109 Brassica carinata HOM05D003472 ORTHO05D004200 1.5e-45 186.4 143 60.8
arahy.Tifrunner.gnm1.ann1.69PAS2 Arachis hypogaea HOM05D003472 ORTHO05D004200 3.4e-45 185.3 143 60.8
TWI60G0449 Tripterygium wilfordii HOM05D003472 ORTHO05D004200 3.4e-45 185.3 144 59.0
AL7G29240 Arabidopsis lyrata HOM05D003472 ORTHO05D004200 4.4e-45 184.9 143 60.8
PGR031G2218 Punica granatum HOM05D003472 ORTHO05D004200 4.4e-45 184.9 153 60.8
AT4G24040 Arabidopsis thaliana HOM05D003472 ORTHO05D004200 7.5e-45 184.1 143 60.8
Lj4g0019041 Lotus japonicus HOM05D003472 ORTHO05D004200 7.5e-45 184.1 143 59.4
AagrBONN_evm.TU.Sc2ySwM_117.3367 Anthoceros agrestis HOM05D003472 ORTHO05D004200 9.8e-45 183.7 141 59.6
Sp7g22010 Schrenkiella parvula HOM05D003472 ORTHO05D004200 9.8e-45 183.7 143 60.8
Thecc.03G305100 Theobroma cacao HOM05D003472 ORTHO05D004200 9.8e-45 183.7 143 60.8
VMungo0251G0959 Vigna mungo HOM05D003472 ORTHO05D004200 9.8e-45 183.7 143 59.4
Zm00001eb021270 Zea mays HOM05D003472 ORTHO05D004200 1.3e-44 183.3 143 63.6
BcaNung05698 Brassica carinata HOM05D003472 ORTHO05D004200 1.7e-44 183.0 143 61.5
Thhalv10024684m.g Eutrema salsugineum HOM05D003472 ORTHO05D004200 1.7e-44 183.0 143 60.8
Nn1g00321 Nelumbo nucifera HOM05D003472 ORTHO05D004200 2.2e-44 182.6 134 63.4
BcaC09g50919 Brassica carinata HOM05D003472 ORTHO05D004200 2.8e-44 182.2 143 60.1
C01p19260 Brassica napus HOM05D003472 ORTHO05D004200 2.8e-44 182.2 143 60.1
SHI06939 Sapria himalayana HOM05D003472 ORTHO05D004200 4.8e-44 181.4 142 58.5
Mapoly0014s0133 Marchantia polymorpha HOM05D003472 ORTHO05D004200 6.3e-44 181.0 144 59.7
BolC7t45827H Brassica oleracea HOM05D003472 ORTHO05D004200 8.3e-44 180.6 143 60.8
A03p54940 Brassica napus HOM05D003472 ORTHO05D004200 1.1e-43 180.3 143 60.8
BraA03t14559Z Brassica rapa HOM05D003472 ORTHO05D004200 1.1e-43 180.3 143 60.8
BolC1t01851H Brassica oleracea HOM05D003472 ORTHO05D004200 1.4e-43 179.9 143 59.4
Carub.0007s1705 Capsella rubella HOM05D003472 ORTHO05D004200 1.8e-43 179.5 143 58.7
SMO119G0122 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 1.8e-43 179.5 141 56.0
A01p15310 Brassica napus HOM05D003472 ORTHO05D004200 2.4e-43 179.1 143 59.4
BraA01t01475Z Brassica rapa HOM05D003472 ORTHO05D004200 2.4e-43 179.1 143 59.4
BcaNung06470 Brassica carinata HOM05D003472 ORTHO05D004200 3.1e-43 178.7 143 60.8
C07p53330 Brassica napus HOM05D003472 ORTHO05D004200 3.1e-43 178.7 143 60.1
CARHR231440 Cardamine hirsuta HOM05D003472 ORTHO05D004200 4.1e-43 178.3 143 58.7
CANSAT21G0971 Cannabis sativa HOM05D003472 ORTHO05D004200 2.0e-42 176.0 143 59.4
Pp3c16_7830 Physcomitrium patens HOM05D003472 ORTHO05D004200 2.0e-42 176.0 141 56.0
Pp3c5_16470 Physcomitrium patens HOM05D003472 ORTHO05D004200 3.5e-42 175.3 141 57.4
Peaxi162Scf00074g00435 Petunia axillaris HOM05D003472 ORTHO05D004200 2.3e-41 172.6 142 59.2
Gohir.D03G086900 Gossypium hirsutum HOM05D003472 ORTHO05D004200 1.1e-40 170.2 142 56.3
Nitab4.5_0006889g0020 Nicotiana tabacum HOM05D003472 ORTHO05D004200 9.5e-40 167.2 143 58.0
Nitab4.5_0006889g0030 Nicotiana tabacum HOM05D003472 ORTHO05D004200 1.2e-39 166.8 143 55.9
Pp3c23_11240 Physcomitrium patens HOM05D003472 ORTHO05D004200 2.8e-39 165.6 141 53.2
Pp3c24_9748 Physcomitrium patens HOM05D003472 ORTHO05D004200 3.6e-39 165.2 141 53.9
Pp3c24_9750 Physcomitrium patens HOM05D003472 ORTHO05D004200 3.6e-39 165.2 141 53.9
Cpa.g.sc15.13 Carica papaya HOM05D003472 ORTHO05D004200 1.0e-38 163.7 139 57.6
SMO165G0094 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 1.8e-38 162.9 142 54.9
SMO165G0115 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 2.3e-38 162.5 142 54.9
CBR_g24063 Chara braunii HOM05D003472 ORTHO05D004200 3.0e-38 162.2 140 53.6
Rhsim08G0020400 Rhododendron simsii HOM05D003472 ORTHO05D004200 3.0e-38 162.2 150 58.0
SMO272G0034 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 8.9e-38 160.6 142 54.2
Mapoly0055s0045 Marchantia polymorpha HOM05D003472 ORTHO05D004200 2.6e-37 159.1 141 55.3
Ciclev10023271m.g Citrus clementina HOM05D003472 ORTHO05D004200 2.8e-36 155.6 143 58.0
ClCG01G001870 Citrullus lanatus HOM05D003472 ORTHO05D004200 1.4e-35 153.3 134 56.0
CiPaw.11G115500 Carya illinoinensis HOM05D003472 ORTHO05D004200 4.1e-35 151.8 142 52.1
Oeu009994.1 Olea europaea HOM05D003472 ORTHO05D004200 1.6e-34 149.8 112 62.5
Nitab4.5_0002439g0130 Nicotiana tabacum HOM05D003472 ORTHO05D004200 2.7e-34 149.1 112 58.9
CSS0021198 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 2.3e-33 146.0 160 51.2
arahy.Tifrunner.gnm1.ann1.TJXZ67 Arachis hypogaea HOM05D003472 ORTHO05D004200 8.6e-33 144.1 132 53.8
CDE07G1940 Ceratophyllum demersum HOM05D003472 ORTHO05D004200 1.1e-32 143.7 110 58.2
SEGI_32363 Sequoiadendron giganteum HOM05D003472 ORTHO05D049298 3.3e-32 142.1 73 90.4
Rhsim02G0248900 Rhododendron simsii HOM05D003472 ORTHO05D004200 2.1e-31 139.4 102 64.7
MD14G1134600 Malus domestica HOM05D003472 ORTHO05D004200 5.2e-30 134.8 102 59.8
Dinv06032 Davidia involucrata HOM05D003472 ORTHO05D004200 3.7e-28 128.6 84 70.2
Lalb_Chr05g0223881 Lupinus albus HOM05D003472 ORTHO05D004200 1.4e-27 126.7 102 55.9
vmacro13868 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 1.4e-27 126.7 91 64.8
QL02p005551 Quercus lobata HOM05D000369 ORTHO05D004200 2.8e-23 112.5 87 55.2
vmacro09228 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 5.8e-21 104.8 72 69.4
PRCOL_00003576 Prasinoderma coloniale HOM05D003472 ORTHO05D004200 9.8e-21 104.0 164 39.0
MCO05G351 Micromonas commoda HOM05D003472 ORTHO05D004200 7.8e-18 94.4 152 35.5
unitig_1.g29358 Utricularia gibba HOM05D003472 ORTHO05D004200 7.8e-18 94.4 71 62.0
Nn7g36715 Nelumbo nucifera HOM05D003472 ORTHO05D049298 1.1e-16 90.5 71 56.3
Cre03.g195600 Chlamydomonas reinhardtii HOM05D003472 ORTHO05D004200 7.3e-16 87.8 207 30.9
Ca_29384_v3 Cicer arietinum L. HOM05D003472 ORTHO05D004200 2.6e-13 79.3 141 35.5
Dinv06031 Davidia involucrata HOM05D003472 ORTHO05D004200 7.1e-11 71.2 49 63.3
Lj8C203G7 Lonicera japonica HOM05D003472 ORTHO05D004200 4.7e-07 58.5 33 81.8
Aa31LG6G7240 Aethionema arabicum HOM05D003472 ORTHO05D004200 1.1e-06 57.4 33 72.7


User provided reference genes

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