Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_06301 Sequoiadendron giganteum HOM05D003366 ORTHO05D004045 4.8e-39 164.1 86 100.0
SMO143G0312 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 4.7e-10 67.8 49 73.5
SEGI_01884 Sequoiadendron giganteum HOM05D003366 ORTHO05D004045 2.3e-09 65.5 60 60.0
Hma1.2p1_0599F.1_g187060 Hydrangea macrophylla HOM05D003366 ORTHO05D004045 5.2e-09 64.3 50 68.0
AagrBONN_evm.TU.Sc2ySwM_344.1836 Anthoceros agrestis HOM05D003366 ORTHO05D004045 6.8e-09 63.9 49 73.5
Ca_06031_v3 Cicer arietinum L. HOM05D003366 ORTHO05D004045 8.9e-09 63.5 50 68.0
Phvul.008G218200 Phaseolus vulgaris HOM05D003366 ORTHO05D004045 1.2e-08 63.2 50 68.0
Hund03398 Selenicereus undatus HOM05D003366 ORTHO05D004045 1.2e-08 63.2 50 68.0
Ah.16g101920 Amaranthus hybridus HOM05D003366 ORTHO05D004045 2.0e-08 62.4 49 67.3
Ah.16g105750 Amaranthus hybridus HOM05D003366 ORTHO05D004045 2.0e-08 62.4 50 66.0
Psat1g185040 Pisum sativum HOM05D003366 ORTHO05D004045 2.0e-08 62.4 50 66.0
SalBow5G1323 Salvia bowleyana HOM05D003366 ORTHO05D004045 2.6e-08 62.0 50 66.0
SalBow5G5386 Salvia bowleyana HOM05D003366 ORTHO05D004045 2.6e-08 62.0 50 66.0
Medtr5g084030 Medicago truncatula HOM05D003366 ORTHO05D004045 3.4e-08 61.6 50 64.0
Psat2g028840 Pisum sativum HOM05D003366 ORTHO05D004045 3.4e-08 61.6 50 64.0
QL04p067730 Quercus lobata HOM05D003366 ORTHO05D004045 3.4e-08 61.6 50 66.0
TPR.G20196 Trifolium pratense HOM05D003366 ORTHO05D004045 3.4e-08 61.6 50 64.0
AUR62009285 Chenopodium quinoa HOM05D003366 ORTHO05D004045 4.4e-08 61.2 50 66.0
AUR62039696 Chenopodium quinoa HOM05D003366 ORTHO05D004045 4.4e-08 61.2 50 66.0
Nitab4.5_0000025g0230 Nicotiana tabacum HOM05D003366 ORTHO05D004045 4.4e-08 61.2 51 62.7
Prupe.3G196200 Prunus persica HOM05D003366 ORTHO05D004045 4.4e-08 61.2 52 61.5
VMungo0647G1799 Vigna mungo HOM05D003366 ORTHO05D004045 4.4e-08 61.2 50 64.0
EL10Ac2g04609 Beta vulgaris HOM05D003366 ORTHO05D004045 5.7e-08 60.8 50 64.0
Glyma.14G053300 Glycine max HOM05D003366 ORTHO05D004045 5.7e-08 60.8 50 62.0
Lj1A799T34 Lonicera japonica HOM05D003366 ORTHO05D004045 5.7e-08 60.8 49 67.3
MD09G1129300 Malus domestica HOM05D003366 ORTHO05D004045 5.7e-08 60.8 50 64.0
MD17G1118200 Malus domestica HOM05D003366 ORTHO05D004045 5.7e-08 60.8 50 64.0
AL8G20910 Arabidopsis lyrata HOM05D003366 ORTHO05D004045 7.5e-08 60.5 49 63.3
CARHR102260 Cardamine hirsuta HOM05D003366 ORTHO05D004045 7.5e-08 60.5 51 64.7
FAN05G5269 Fragaria x ananassa HOM05D003366 ORTHO05D004045 7.5e-08 60.5 50 62.0
FAN09G3658 Fragaria x ananassa HOM05D004224 ORTHO05D006437 7.5e-08 60.5 50 62.0
FAN10G3881 Fragaria x ananassa HOM05D003366 ORTHO05D004045 7.5e-08 60.5 50 62.0
FAN14G5851 Fragaria x ananassa HOM05D003366 ORTHO05D004045 7.5e-08 60.5 50 62.0
HanXRQChr10g0306821 Helianthus annuus HOM05D003366 ORTHO05D004045 7.5e-08 60.5 49 61.2
LjContig00357g0014369 Lotus japonicus HOM05D003366 ORTHO05D004045 7.5e-08 60.5 50 64.0
Mapoly0007s0091 Marchantia polymorpha HOM05D003366 ORTHO05D004045 7.5e-08 60.5 49 67.3
Oeu023461.1 Olea europaea HOM05D003366 ORTHO05D004045 7.5e-08 60.5 50 62.0
PGR031G3285 Punica granatum HOM05D003366 ORTHO05D004045 7.5e-08 60.5 50 64.0
Sed0016337 Sechium edule HOM05D003366 ORTHO05D004045 7.5e-08 60.5 50 64.0
THA.LOC104819033 Tarenaya hassleriana HOM05D003366 ORTHO05D004045 7.5e-08 60.5 50 62.0
vmacro09477 Vaccinium macrocarpon HOM05D003366 ORTHO05D004045 7.5e-08 60.5 50 62.0
Actinidia18830 Actinidia chinensis HOM05D003366 ORTHO05D004045 9.8e-08 60.1 50 62.0
arahy.Tifrunner.gnm1.ann1.0B41PU Arachis hypogaea HOM05D003366 ORTHO05D004045 9.8e-08 60.1 50 62.0
arahy.Tifrunner.gnm1.ann1.8VJ98X Arachis hypogaea HOM05D003366 ORTHO05D004045 9.8e-08 60.1 50 62.0
CSS0040673 Camellia sinensis var. sinensis HOM05D003366 ORTHO05D004045 9.8e-08 60.1 49 63.3
ECA234G0856 Erigeron canadensis HOM05D003366 ORTHO05D004045 9.8e-08 60.1 49 61.2
Eucgr.A01368 Eucalyptus grandis HOM05D003366 ORTHO05D004045 9.8e-08 60.1 50 64.0
Hma1.2p1_0629F.1_g192240 Hydrangea macrophylla HOM05D003366 ORTHO05D004045 9.8e-08 60.1 50 62.0
MBI14_g24035_MAGBIO Magnolia biondii HOM05D003366 ORTHO05D004045 9.8e-08 60.1 51 62.7
Oeu045495.1 Olea europaea HOM05D003366 ORTHO05D004045 9.8e-08 60.1 50 62.0
Pp3c10_25830 Physcomitrium patens HOM05D003366 ORTHO05D004045 9.8e-08 60.1 51 64.7
Sc21g0000490 Simmondsia chinensis HOM05D003366 ORTHO05D004045 9.8e-08 60.1 49 65.3
AT5G48220 Arabidopsis thaliana HOM05D003366 ORTHO05D004045 1.3e-07 59.7 49 61.2
arahy.Tifrunner.gnm1.ann1.65EY62 Arachis hypogaea HOM05D003366 ORTHO05D004045 1.3e-07 59.7 50 62.0
arahy.Tifrunner.gnm1.ann1.SQZ1L0 Arachis hypogaea HOM05D003366 ORTHO05D004045 1.3e-07 59.7 50 62.0
A06p39320 Brassica napus HOM05D003366 ORTHO05D004045 1.3e-07 59.7 49 63.3
BraA06t26847Z Brassica rapa HOM05D003366 ORTHO05D004045 1.3e-07 59.7 49 63.3
CANSAT64G2473 Cannabis sativa HOM05D003366 ORTHO05D004045 1.3e-07 59.7 50 62.0
CARHR184070 Cardamine hirsuta HOM05D003366 ORTHO05D004045 1.3e-07 59.7 49 61.2
Cfa014212 Carpinus fangiana HOM05D003366 ORTHO05D004045 1.3e-07 59.7 49 65.3
CiPaw.03G282800 Carya illinoinensis HOM05D003366 ORTHO05D004045 1.3e-07 59.7 49 65.3
COL.COLO4_19639 Corchorus olitorius HOM05D003366 ORTHO05D004045 1.3e-07 59.7 50 62.0
Peaxi162Scf00089g01131 Petunia axillaris HOM05D003366 ORTHO05D004045 1.3e-07 59.7 49 63.3
AUR62008962 Chenopodium quinoa HOM05D003366 ORTHO05D004045 1.7e-07 59.3 49 65.3
AUR62014541 Chenopodium quinoa HOM05D003366 ORTHO05D004045 1.7e-07 59.3 49 65.3
Duzib138G0143 Durio zibethinus HOM05D003366 ORTHO05D004045 1.7e-07 59.3 50 62.0
Migut.D02018 Erythranthe guttata HOM05D003366 ORTHO05D004045 1.7e-07 59.3 49 63.3
Migut.O00185 Erythranthe guttata HOM05D003366 ORTHO05D004045 1.7e-07 59.3 49 63.3
Rhsim04G0030100 Rhododendron simsii HOM05D003366 ORTHO05D004045 1.7e-07 59.3 49 61.2
THA.LOC104808841 Tarenaya hassleriana HOM05D003366 ORTHO05D004045 1.7e-07 59.3 51 62.7
Carub.0008s0779 Capsella rubella HOM05D003366 ORTHO05D004045 2.2e-07 58.9 49 61.2
ClCG02G002960 Citrullus lanatus HOM05D003366 ORTHO05D004045 2.2e-07 58.9 50 62.0
MELO3C024189.2 Cucumis melo HOM05D003366 ORTHO05D004045 2.2e-07 58.9 50 62.0
CsaV3_7G002440 Cucumis sativus L. HOM05D003366 ORTHO05D004045 2.2e-07 58.9 50 62.0
Lalb_Chr10g0105441 Lupinus albus HOM05D003366 ORTHO05D004045 2.2e-07 58.9 49 61.2
PSO541G3149 Papaver somniferum HOM05D003366 ORTHO05D004045 2.2e-07 58.9 49 63.3
Potri.014G169100 Populus trichocarpa HOM05D003366 ORTHO05D004045 2.2e-07 58.9 50 62.0
Sabra14G0128900 Salix brachista HOM05D003366 ORTHO05D004045 2.2e-07 58.9 50 62.0
TAR626G1358 Trochodendron aralioides HOM05D003366 ORTHO05D004045 2.2e-07 58.9 50 64.0
EL10Ac2g04021 Beta vulgaris HOM05D003366 ORTHO05D004045 2.8e-07 58.5 50 60.0
BcaC06g30818 Brassica carinata HOM05D003366 ORTHO05D004045 2.8e-07 58.5 49 61.2
C07p38950 Brassica napus HOM05D003366 ORTHO05D004045 2.8e-07 58.5 49 61.2
BolC7t44416H Brassica oleracea HOM05D003366 ORTHO05D004045 2.8e-07 58.5 49 61.2
Thhalv10002557m.g Eutrema salsugineum HOM05D003366 ORTHO05D004045 2.8e-07 58.5 51 62.7
Thhalv10004384m.g Eutrema salsugineum HOM05D003366 ORTHO05D004045 2.8e-07 58.5 49 61.2
FAN02G0729 Fragaria x ananassa HOM05D003366 ORTHO05D004045 2.8e-07 58.5 50 60.0
Gohir.A07G163900 Gossypium hirsutum HOM05D003366 ORTHO05D004045 2.8e-07 58.5 50 60.0
Gohir.D07G170900 Gossypium hirsutum HOM05D003366 ORTHO05D004045 2.8e-07 58.5 50 60.0
PSO675G3120 Papaver somniferum HOM05D003366 ORTHO05D004045 2.8e-07 58.5 49 63.3
BolC3t17760H Brassica oleracea HOM05D003366 ORTHO05D004045 3.7e-07 58.2 51 62.7
CBR_g10789 Chara braunii HOM05D003366 ORTHO05D004045 3.7e-07 58.2 49 65.3
Glyma.02G259000 Glycine max HOM05D003366 ORTHO05D004045 3.7e-07 58.2 50 58.0
Lsat_1_v5_gn_5_122300 Lactuca sativa HOM05D003366 ORTHO05D004045 3.7e-07 58.2 49 61.2
RcHm_v2.0_Chr2g0155751 Rosa chinensis HOM05D003366 ORTHO05D004045 3.7e-07 58.2 50 58.0
Sp2g18590 Schrenkiella parvula HOM05D003366 ORTHO05D004045 3.7e-07 58.2 49 61.2
Solyc03g111850.3 Solanum lycopersicum HOM05D003366 ORTHO05D004045 3.7e-07 58.2 49 63.3
Sopen03g030970 Solanum pennellii HOM05D003366 ORTHO05D004045 3.7e-07 58.2 49 63.3
PGSC0003DMG400015153 Solanum tuberosum HOM05D003366 ORTHO05D004045 3.7e-07 58.2 49 63.3
unitig_21.g20442 Utricularia gibba HOM05D003366 ORTHO05D004045 3.7e-07 58.2 57 54.4
Lsat_1_v5_gn_7_97420 Lactuca sativa HOM05D003366 ORTHO05D004045 4.9e-07 57.8 49 59.2
Lalb_Chr04g0250271 Lupinus albus HOM05D003366 ORTHO05D004045 4.9e-07 57.8 49 61.2
Manes.12G063602 Manihot esculenta HOM05D003366 ORTHO05D004045 4.9e-07 57.8 61 54.1
PSO210G3015 Papaver somniferum HOM05D003366 ORTHO05D004045 4.9e-07 57.8 49 61.2
PSO210G6970 Papaver somniferum HOM05D003366 ORTHO05D004045 4.9e-07 57.8 49 61.2
ATR0751G192 Amborella trichopoda HOM05D003366 ORTHO05D004045 6.3e-07 57.4 50 62.0
BcaC01g03208 Brassica carinata HOM05D003366 ORTHO05D004045 6.3e-07 57.4 51 60.8
Carub.0003s2605 Capsella rubella HOM05D003366 ORTHO05D004045 6.3e-07 57.4 51 60.8
Ciclev10015498m.g Citrus clementina HOM05D003366 ORTHO05D004045 6.3e-07 57.4 50 60.0
Cc04_g11110 Coffea canephora HOM05D003366 ORTHO05D004045 6.3e-07 57.4 49 61.2
DCAR_019671 Daucus carota HOM05D003366 ORTHO05D004045 6.3e-07 57.4 49 61.2
Peaxi162Scf00801g00730 Petunia axillaris HOM05D003366 ORTHO05D004045 6.3e-07 57.4 49 63.3
GSVIVG01030116001 Vitis vinifera HOM05D003366 ORTHO05D004045 6.3e-07 57.4 50 56.0
Zm00001eb424560 Zea mays HOM05D003366 ORTHO05D004045 6.3e-07 57.4 49 61.2
Gorai.001G191000 Gossypium raimondii HOM05D003366 ORTHO05D004045 8.3e-07 57.0 50 58.0
Nn1g03151 Nelumbo nucifera HOM05D003366 ORTHO05D004045 8.3e-07 57.0 49 61.2
Nn6g34363 Nelumbo nucifera HOM05D003366 ORTHO05D004045 8.3e-07 57.0 49 61.2
Os04g0467700 Oryza sativa ssp. japonica HOM05D003366 ORTHO05D004045 8.3e-07 57.0 49 61.2
BcaB06g26784 Brassica carinata HOM05D003366 ORTHO05D004045 1.1e-06 56.6 51 60.8
CAN.G126.88 Capsicum annuum HOM05D003366 ORTHO05D004045 1.1e-06 56.6 49 61.2
CDE02G1598 Ceratophyllum demersum HOM05D003366 ORTHO05D004045 1.1e-06 56.6 49 59.2
RcHm_v2.0_Chr5g0011911 Rosa chinensis HOM05D003366 ORTHO05D004045 1.1e-06 56.6 50 60.0
Sp3g23210 Schrenkiella parvula HOM05D003366 ORTHO05D004045 1.1e-06 56.6 49 61.2
AL3G42040 Arabidopsis lyrata HOM05D003366 ORTHO05D004045 1.4e-06 56.2 51 58.8
AT2G04400 Arabidopsis thaliana HOM05D003366 ORTHO05D004045 1.4e-06 56.2 51 58.8
BcaB08g34466 Brassica carinata HOM05D003366 ORTHO05D004045 1.4e-06 56.2 51 58.8
A03p44300 Brassica napus HOM05D003366 ORTHO05D004045 1.4e-06 56.2 51 58.8
BraA03t13559Z Brassica rapa HOM05D003366 ORTHO05D004045 1.4e-06 56.2 51 58.8
HPP92_022822 Vanilla planifolia HOM05D003366 ORTHO05D004045 1.4e-06 56.2 50 58.0
MSTRG.9698 Avicennia marina HOM05D003366 ORTHO05D004045 1.8e-06 55.8 49 57.1
BcaC01g03298 Brassica carinata HOM05D003366 ORTHO05D004045 1.8e-06 55.8 51 58.8
BolC3t17665H Brassica oleracea HOM05D003366 ORTHO05D004045 1.8e-06 55.8 51 58.8
Hund13735 Selenicereus undatus HOM05D003366 ORTHO05D004045 1.8e-06 55.8 50 56.0
Aqoxy3G01284 Aquilegia oxysepala HOM05D003366 ORTHO05D004045 2.4e-06 55.5 50 56.0
Cpa.g.sc136.37 Carica papaya HOM05D003366 ORTHO05D004045 2.4e-06 55.5 50 56.0
HanXRQChr11g0329411 Helianthus annuus HOM05D003366 ORTHO05D004045 2.4e-06 55.5 49 59.2
Lj8A136T94 Lonicera japonica HOM05D003366 ORTHO05D004045 2.4e-06 55.5 49 57.1
TWI18G0380 Tripterygium wilfordii HOM05D003366 ORTHO05D004045 3.1e-06 55.1 50 58.0
TWI36G0699 Tripterygium wilfordii HOM05D003366 ORTHO05D004045 3.1e-06 55.1 50 58.0
Dinv26592 Davidia involucrata HOM05D003366 ORTHO05D004045 4.1e-06 54.7 51 56.9
TWI75G1649 Tripterygium wilfordii HOM05D003366 ORTHO05D004045 4.1e-06 54.7 49 59.2
Aa31sc202G30 Aethionema arabicum HOM05D003366 ORTHO05D004045 7.0e-06 53.9 51 56.9
Gohir.A11G148200 Gossypium hirsutum HOM05D003366 ORTHO05D004045 7.0e-06 53.9 50 56.0
C03p54710 Brassica napus HOM05D003366 ORTHO05D004045 9.2e-06 53.5 51 58.8
Os09g0255400 Oryza sativa ssp. japonica HOM05D003366 ORTHO05D004045 9.2e-06 53.5 48 56.2


User provided reference genes

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