Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_05338 Sequoiadendron giganteum HOM05D003092 ORTHO05D003977 4.2e-134 481.5 263 100.0
Cpa.g.sc8.291 Carica papaya HOM05D003092 ORTHO05D003977 3.2e-17 93.2 64 68.8
Duzib138G1254 Durio zibethinus HOM05D003092 ORTHO05D003977 1.2e-16 91.3 64 68.8
Thhalv10020563m.g Eutrema salsugineum HOM05D003092 ORTHO05D003977 2.1e-16 90.5 65 66.2
ClCG07G010930 Citrullus lanatus HOM05D003092 ORTHO05D003977 2.7e-16 90.1 64 62.5
Eucgr.K01341 Eucalyptus grandis HOM05D003092 ORTHO05D003977 2.7e-16 90.1 62 69.4
FAN02G1300 Fragaria x ananassa HOM05D003092 ORTHO05D003977 2.7e-16 90.1 62 67.7
Aa31LG8G8760 Aethionema arabicum HOM05D003092 ORTHO05D003977 3.5e-16 89.7 65 64.6
FAN14G2664 Fragaria x ananassa HOM05D003092 ORTHO05D003977 3.5e-16 89.7 62 67.7
Potri.016G018500 Populus trichocarpa HOM05D003092 ORTHO05D003977 3.5e-16 89.7 64 65.6
BcaC05g28095 Brassica carinata HOM05D003092 ORTHO05D003977 4.6e-16 89.4 65 66.2
A05p26630 Brassica napus HOM05D003092 ORTHO05D003977 4.6e-16 89.4 65 66.2
C05p41220 Brassica napus HOM05D003092 ORTHO05D003977 4.6e-16 89.4 65 66.2
BraA05t21538Z Brassica rapa HOM05D003092 ORTHO05D003977 4.6e-16 89.4 65 66.2
FvH4_6g39530 Fragaria vesca HOM05D003092 ORTHO05D003977 4.6e-16 89.4 62 69.4
FAN14G1111 Fragaria x ananassa HOM05D003092 ORTHO05D003977 4.6e-16 89.4 62 69.4
Gohir.D08G060900 Gossypium hirsutum HOM05D003092 ORTHO05D003977 4.6e-16 89.4 64 65.6
Gorai.004G063100 Gossypium raimondii HOM05D003092 ORTHO05D003977 4.6e-16 89.4 64 65.6
Sp3g20000 Schrenkiella parvula HOM05D003092 ORTHO05D003977 4.6e-16 89.4 65 64.6
Sed0019858 Sechium edule HOM05D003092 ORTHO05D003977 4.6e-16 89.4 60 68.3
THA.LOC104803008 Tarenaya hassleriana HOM05D003092 ORTHO05D003977 4.6e-16 89.4 63 65.1
GSVIVG01015824001 Vitis vinifera HOM05D003092 ORTHO05D003977 4.6e-16 89.4 61 68.9
BolC5t32860H Brassica oleracea HOM05D003092 ORTHO05D003977 6.0e-16 89.0 65 66.2
Hma1.2p1_0758F.1_g213520 Hydrangea macrophylla HOM05D003092 ORTHO05D003977 6.0e-16 89.0 62 64.5
BcaB04g20537 Brassica carinata HOM05D003092 ORTHO05D003977 7.9e-16 88.6 65 64.6
BcaC09g49157 Brassica carinata HOM05D003092 ORTHO05D003977 7.9e-16 88.6 65 64.6
A01p32960 Brassica napus HOM05D003092 ORTHO05D003977 7.9e-16 88.6 65 64.6
BolC1t04162H Brassica oleracea HOM05D003092 ORTHO05D003977 7.9e-16 88.6 65 64.6
Medtr4g076100 Medicago truncatula HOM05D003092 ORTHO05D003977 7.9e-16 88.6 60 66.7
Atru.chr8.993 Acer truncatum HOM05D003092 ORTHO05D003977 1.0e-15 88.2 65 64.6
CARHR098090 Cardamine hirsuta HOM05D003092 ORTHO05D003977 1.0e-15 88.2 65 64.6
FAN09G3380 Fragaria x ananassa HOM05D003092 ORTHO05D003977 1.0e-15 88.2 62 67.7
Lalb_Chr01g0001161 Lupinus albus HOM05D003092 ORTHO05D003977 1.0e-15 88.2 61 68.9
PGR142G2785 Punica granatum HOM05D003092 ORTHO05D003977 1.0e-15 88.2 60 73.3
arahy.Tifrunner.gnm1.ann1.IE54UT Arachis hypogaea HOM05D003092 ORTHO05D003977 1.3e-15 87.8 60 70.0
CANSAT64G1584 Cannabis sativa HOM05D003092 ORTHO05D003977 1.3e-15 87.8 62 64.5
MELO3C032808.2 Cucumis melo HOM05D003092 ORTHO05D003977 1.3e-15 87.8 60 65.0
CsaV3_4G007370 Cucumis sativus L. HOM05D003092 ORTHO05D003977 1.3e-15 87.8 60 65.0
Dinv18426 Davidia involucrata HOM05D003092 ORTHO05D003977 1.3e-15 87.8 62 66.1
FAN02G3818 Fragaria x ananassa HOM05D003092 ORTHO05D003977 1.3e-15 87.8 62 67.7
QL04p061990 Quercus lobata HOM05D003092 ORTHO05D003977 1.3e-15 87.8 62 67.7
AL3G36410 Arabidopsis lyrata HOM05D003092 ORTHO05D003977 1.8e-15 87.4 65 63.1
Cfa023523 Carpinus fangiana HOM05D003092 ORTHO05D003977 1.8e-15 87.4 60 68.3
Sed0024474 Sechium edule HOM05D003092 ORTHO05D003977 1.8e-15 87.4 60 65.0
Gohir.A08G051200 Gossypium hirsutum HOM05D003092 ORTHO05D003977 2.3e-15 87.0 64 64.1
HanXRQChr14g0446441 Helianthus annuus HOM05D003092 ORTHO05D003977 2.3e-15 87.0 60 66.7
PGSC0003DMG400011754 Solanum tuberosum HOM05D003092 ORTHO05D003977 2.3e-15 87.0 60 65.0
TPR.G35755 Trifolium pratense HOM05D003092 ORTHO05D003977 2.3e-15 87.0 60 66.7
TAR629G1366 Trochodendron aralioides HOM05D003092 ORTHO05D003977 2.3e-15 87.0 64 64.1
CAN.G352.66 Capsicum annuum HOM05D003092 ORTHO05D003977 3.0e-15 86.7 60 66.7
Duzib133G0324 Durio zibethinus HOM05D003092 ORTHO05D003977 3.0e-15 86.7 64 62.5
ECA238G0264 Erigeron canadensis HOM05D003092 ORTHO05D003977 3.0e-15 86.7 62 62.9
Thhalv10020531m.g Eutrema salsugineum HOM05D003092 ORTHO05D003977 3.0e-15 86.7 65 63.1
Nn7g38238 Nelumbo nucifera HOM05D003092 ORTHO05D003977 3.0e-15 86.7 64 65.6
Solyc07g043310.3 Solanum lycopersicum HOM05D003092 ORTHO05D003977 3.0e-15 86.7 60 65.0
AT3G22200 Arabidopsis thaliana HOM05D003092 ORTHO05D003977 3.9e-15 86.3 65 63.1
CiPaw.04G073100 Carya illinoinensis HOM05D003092 ORTHO05D003977 3.9e-15 86.3 62 64.5
Ciclev10011509m.g Citrus clementina HOM05D003092 ORTHO05D003977 3.9e-15 86.3 62 66.1
Thecc.01G172800 Theobroma cacao HOM05D003092 ORTHO05D003977 3.9e-15 86.3 64 65.6
MSTRG.14878 Avicennia marina HOM05D003092 ORTHO05D003977 5.1e-15 85.9 60 70.0
BcaB06g26322 Brassica carinata HOM05D003092 ORTHO05D003977 5.1e-15 85.9 65 64.6
Os04g0614600 Oryza sativa ssp. japonica HOM05D003092 ORTHO05D003977 5.1e-15 85.9 65 61.5
QL04p061858 Quercus lobata HOM05D003092 ORTHO05D003977 5.1e-15 85.9 61 67.2
RcHm_v2.0_Chr2g0153591 Rosa chinensis HOM05D003092 ORTHO05D003977 5.1e-15 85.9 62 64.5
Sabra06G0014400 Salix brachista HOM05D003092 ORTHO05D003977 5.1e-15 85.9 64 62.5
ATR0752G155 Amborella trichopoda HOM05D003092 ORTHO05D003977 6.7e-15 85.5 60 66.7
arahy.Tifrunner.gnm1.ann1.K82IJI Arachis hypogaea HOM05D003092 ORTHO05D003977 6.7e-15 85.5 59 67.8
Manes.08G069100 Manihot esculenta HOM05D003092 ORTHO05D003977 6.7e-15 85.5 64 62.5
PSO541G1731 Papaver somniferum HOM05D003092 ORTHO05D003977 6.7e-15 85.5 64 60.9
PSO675G5899 Papaver somniferum HOM05D003092 ORTHO05D003977 6.7e-15 85.5 64 60.9
Carub.0003s2237 Capsella rubella HOM05D003092 ORTHO05D003977 8.7e-15 85.1 65 61.5
Gohir.A11G156000 Gossypium hirsutum HOM05D003092 ORTHO05D003977 8.7e-15 85.1 64 60.9
Gohir.D11G163100 Gossypium hirsutum HOM05D003092 ORTHO05D003977 8.7e-15 85.1 64 60.9
Gorai.007G173800 Gossypium raimondii HOM05D003092 ORTHO05D003977 8.7e-15 85.1 64 60.9
Potri.006G020900 Populus trichocarpa HOM05D003092 ORTHO05D003977 8.7e-15 85.1 64 62.5
Rhsim04G0084500 Rhododendron simsii HOM05D003092 ORTHO05D003977 8.7e-15 85.1 62 64.5
Sopen07g022870 Solanum pennellii HOM05D003092 ORTHO05D003977 8.7e-15 85.1 60 63.3
SGA_v2.0_scaffold73G24428 Striga asiatica HOM05D003092 ORTHO05D003977 8.7e-15 85.1 60 68.3
TPR.G21260 Trifolium pratense HOM05D003092 ORTHO05D003977 8.7e-15 85.1 60 68.3
BcaB06g26323 Brassica carinata HOM05D003092 ORTHO05D003977 1.1e-14 84.7 63 61.9
MD09G1139200 Malus domestica HOM05D003092 ORTHO05D003977 1.1e-14 84.7 62 62.9
Nitab4.5_0002232g0040 Nicotiana tabacum HOM05D003092 ORTHO05D003977 1.1e-14 84.7 60 66.7
Phvul.011G024300 Phaseolus vulgaris HOM05D003092 ORTHO05D003977 1.1e-14 84.7 60 63.3
Oeu021138.3 Olea europaea HOM05D003092 ORTHO05D003977 1.5e-14 84.3 60 65.0
Peaxi162Scf00393g00517 Petunia axillaris HOM05D003092 ORTHO05D003977 1.5e-14 84.3 60 66.7
TWI60G0778 Tripterygium wilfordii HOM05D003092 ORTHO05D003977 1.5e-14 84.3 60 65.0
VMungo1127G0189 Vigna mungo HOM05D003092 ORTHO05D003977 1.5e-14 84.3 60 65.0
BcaC05g28093 Brassica carinata HOM05D003092 ORTHO05D003977 1.9e-14 84.0 65 61.5
Ca_11243_v3 Cicer arietinum L. HOM05D003092 ORTHO05D003977 1.9e-14 84.0 60 61.7
MELO3C026404.2 Cucumis melo HOM05D003092 ORTHO05D003977 1.9e-14 84.0 62 62.9
FAN05G2188 Fragaria x ananassa HOM05D003092 ORTHO05D003977 1.9e-14 84.0 63 61.9
Glyma.11G096200 Glycine max HOM05D003092 ORTHO05D003977 1.9e-14 84.0 60 65.0
A05p26600 Brassica napus HOM05D003092 ORTHO05D003977 2.5e-14 83.6 65 61.5
BraA05t21535Z Brassica rapa HOM05D003092 ORTHO05D003977 2.5e-14 83.6 65 61.5
CSS0021585 Camellia sinensis var. sinensis HOM05D003092 ORTHO05D003977 2.5e-14 83.6 60 65.0
CSS0037687 Camellia sinensis var. sinensis HOM05D003092 ORTHO05D003977 2.5e-14 83.6 60 65.0
Sabra16G0020500 Salix brachista HOM05D003092 ORTHO05D003977 2.5e-14 83.6 64 62.5
Sed0028086 Sechium edule HOM05D003092 ORTHO05D003977 2.5e-14 83.6 62 64.5
Migut.M00096 Erythranthe guttata HOM05D003092 ORTHO05D003977 3.3e-14 83.2 60 66.7
MD17G1128700 Malus domestica HOM05D003092 ORTHO05D003977 3.3e-14 83.2 62 62.9
CANSAT64G2744 Cannabis sativa HOM05D003092 ORTHO05D003977 4.3e-14 82.8 62 58.1
Lj1C1040T2 Lonicera japonica HOM05D003092 ORTHO05D003977 4.3e-14 82.8 60 65.0
DCAR_001912 Daucus carota HOM05D003092 ORTHO05D003977 5.6e-14 82.4 59 64.4
CDE06G0430 Ceratophyllum demersum HOM05D003092 ORTHO05D003977 7.4e-14 82.0 60 61.7
Sabra16G0025300 Salix brachista HOM05D003092 ORTHO05D003977 7.4e-14 82.0 64 62.5
SalBow7G2525 Salvia bowleyana HOM05D003092 ORTHO05D003977 1.3e-13 81.3 60 66.7
Cc05_g00030 Coffea canephora HOM05D003092 ORTHO05D003977 2.1e-13 80.5 60 63.3
CsaV3_4G032320 Cucumis sativus L. HOM05D003092 ORTHO05D003977 2.8e-13 80.1 62 61.3
Nitab4.5_0005023g0050 Nicotiana tabacum HOM05D003092 ORTHO05D003977 2.8e-13 80.1 65 66.2
Glyma.12G022300 Glycine max HOM05D003092 ORTHO05D003977 3.7e-13 79.7 60 61.7
Lalb_Chr19g0139641 Lupinus albus HOM05D003092 ORTHO05D003977 3.7e-13 79.7 60 60.0
Prupe.3G186500 Prunus persica HOM05D003092 ORTHO05D003977 3.7e-13 79.7 62 61.3
Aa31LG9G2310 Aethionema arabicum HOM05D003092 ORTHO05D003977 4.8e-13 79.3 59 62.7
Peaxi162Scf00047g02451 Petunia axillaris HOM05D003092 ORTHO05D003977 4.8e-13 79.3 60 65.0
Zm00001eb171190 Zea mays HOM05D003092 ORTHO05D003977 4.8e-13 79.3 63 55.6
CAN.G816.9 Capsicum annuum HOM05D003092 ORTHO05D003977 6.2e-13 79.0 62 62.9
Lsat_1_v5_gn_2_64281 Lactuca sativa HOM05D003092 ORTHO05D003977 6.2e-13 79.0 62 56.5
Lalb_Chr19g0139611 Lupinus albus HOM05D003092 ORTHO05D003977 6.2e-13 79.0 60 58.3
ECA233G1959 Erigeron canadensis HOM05D003092 ORTHO05D003977 8.1e-13 78.6 60 63.3
Zm00001eb281980 Zea mays HOM05D003092 ORTHO05D003977 8.1e-13 78.6 63 55.6
Psat7g179360 Pisum sativum HOM05D003092 ORTHO05D003977 1.1e-12 78.2 60 61.7
Zm00001eb233600 Zea mays HOM05D003092 ORTHO05D003977 1.1e-12 78.2 63 55.6
Lj3g0000609 Lotus japonicus HOM05D003092 ORTHO05D003977 1.4e-12 77.8 60 60.0
Lsat_1_v5_gn_8_37700 Lactuca sativa HOM05D003092 ORTHO05D003977 1.8e-12 77.4 60 61.7
Zm00001eb233590 Zea mays HOM05D003092 ORTHO05D003977 2.4e-12 77.0 63 54.0
Aqoxy1G01441_Aqoxy1G01442 Aquilegia oxysepala HOM05D003092 ORTHO05D003977 3.1e-12 76.6 64 56.2
Solyc12g006450.2 Solanum lycopersicum HOM05D003092 ORTHO05D003977 3.1e-12 76.6 60 63.3
Sopen12g002390 Solanum pennellii HOM05D003092 ORTHO05D003977 3.1e-12 76.6 60 63.3
SGA_v2.0_scaffold181G39738 Striga asiatica HOM05D003092 ORTHO05D003977 3.1e-12 76.6 60 61.7
Hund04375 Selenicereus undatus HOM05D003092 ORTHO05D003977 4.0e-12 76.3 60 61.7
Zm00001eb430840 Zea mays HOM05D003092 ORTHO05D003977 4.0e-12 76.3 64 56.2
MBI18_g11470_MAGBIO Magnolia biondii HOM05D003092 ORTHO05D003977 5.3e-12 75.9 73 52.1
MELO3C016238.2 Cucumis melo HOM05D003092 ORTHO05D003977 6.9e-12 75.5 71 49.3
Sc03g0006060 Simmondsia chinensis HOM05D003092 ORTHO05D003977 6.9e-12 75.5 65 61.5
HanXRQChr08g0214751 Helianthus annuus HOM05D003092 ORTHO05D003977 9.0e-12 75.1 58 62.1
PGSC0003DMG400024275 Solanum tuberosum HOM05D003092 ORTHO05D003977 9.0e-12 75.1 59 62.7
CsaV3_4G007380 Cucumis sativus L. HOM05D003092 ORTHO05D003977 1.2e-11 74.7 71 49.3
Lalb_Chr19g0139631 Lupinus albus HOM05D003092 ORTHO05D003977 1.2e-11 74.7 63 52.4
EL10Ac6g15348 Beta vulgaris HOM05D003092 ORTHO05D003977 1.5e-11 74.3 59 57.6
Oeu003100.1 Olea europaea HOM05D003092 ORTHO05D003977 1.5e-11 74.3 60 55.0
HPP92_026462 Vanilla planifolia HOM05D003092 ORTHO05D003977 1.5e-11 74.3 63 54.0
DCAR_029734 Daucus carota HOM05D003092 ORTHO05D003977 2.0e-11 73.9 62 56.5
Os08g0205900 Oryza sativa ssp. japonica HOM05D003092 ORTHO05D003977 2.6e-11 73.6 60 53.3
AUR62017846 Chenopodium quinoa HOM05D003092 ORTHO05D003977 4.5e-11 72.8 60 58.3
GSVIVG01015821001 Vitis vinifera HOM05D003092 ORTHO05D003977 4.5e-11 72.8 62 51.6
HPP92_014204 Vanilla planifolia HOM05D003092 ORTHO05D003977 5.8e-11 72.4 60 55.0
C01p42030 Brassica napus HOM05D003092 ORTHO05D003977 1.3e-10 71.2 99 42.4
Mapoly0160s0020 Marchantia polymorpha HOM05D003092 ORTHO05D003977 2.2e-10 70.5 62 46.8
Nitab4.5_0002570g0060 Nicotiana tabacum HOM05D003092 ORTHO05D003977 3.8e-10 69.7 64 50.0
Os02g0112900 Oryza sativa ssp. japonica HOM05D003092 ORTHO05D003977 4.9e-10 69.3 63 50.8
Solyc12g006470.2 Solanum lycopersicum HOM05D003092 ORTHO05D003977 8.4e-10 68.6 60 50.0
Nitab4.5_0000073g0550 Nicotiana tabacum HOM05D003092 ORTHO05D003977 1.1e-09 68.2 64 48.4
PGSC0003DMG400024281 Solanum tuberosum HOM05D003092 ORTHO05D003977 1.4e-09 67.8 60 50.0
Peaxi162Scf00047g02452 Petunia axillaris HOM05D003092 ORTHO05D003977 1.9e-09 67.4 51 66.7
Sopen12g002410 Solanum pennellii HOM05D003092 ORTHO05D003977 2.4e-09 67.0 60 50.0
CAN.G339.12 Capsicum annuum HOM05D003092 ORTHO05D003977 3.2e-09 66.6 59 50.8
Os04g0614500 Oryza sativa ssp. japonica HOM05D003092 ORTHO05D003977 5.5e-09 65.9 60 50.0
SMO115G0307 Selaginella moellendorffii HOM05D003092 ORTHO05D003977 1.2e-08 64.7 61 50.8
MELO3C032809.2 Cucumis melo HOM05D003092 ORTHO05D003977 2.1e-08 63.9 60 46.7
PGSC0003DMG400025228 Solanum tuberosum HOM05D003092 ORTHO05D003977 2.7e-08 63.5 59 47.5
Lj7C139T4 Lonicera japonica HOM05D003092 ORTHO05D003977 1.3e-07 61.2 39 66.7
Lj7C141T9 Lonicera japonica HOM05D003092 ORTHO05D003977 1.3e-07 61.2 39 66.7
Solyc08g014610.4 Solanum lycopersicum HOM05D003092 ORTHO05D003977 1.8e-07 60.8 59 44.1
Sopen08g005600 Solanum pennellii HOM05D003092 ORTHO05D003977 1.8e-07 60.8 59 44.1
Pp3c6_25350 Physcomitrium patens HOM05D003092 ORTHO05D003977 3.9e-07 59.7 52 48.1
TAR629G1309 Trochodendron aralioides HOM05D003092 ORTHO05D003977 5.1e-07 59.3 45 55.6
vmacro09169 Vaccinium macrocarpon HOM05D003092 ORTHO05D003977 5.1e-07 59.3 40 62.5
AagrBONN_evm.TU.Sc2ySwM_368.2355 Anthoceros agrestis HOM05D003092 ORTHO05D003977 2.5e-06 57.0 62 43.5
Pp3c1_32910 Physcomitrium patens HOM05D003092 ORTHO05D003977 2.5e-06 57.0 62 46.8
Nitab4.5_0000073g0530 Nicotiana tabacum HOM05D003092 ORTHO05D003977 4.3e-06 56.2 51 52.9
Nitab4.5_0002570g0080 Nicotiana tabacum HOM05D003092 ORTHO05D003977 9.6e-06 55.1 53 43.4


User provided reference genes

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