Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_05160 Sequoiadendron giganteum HOM05D002984 ORTHO05D003561 8.5e-176 620.5 387 100.0
SEGI_39328 Sequoiadendron giganteum HOM05D002984 ORTHO05D003561 3.8e-43 179.9 89 100.0
Hund03157 Selenicereus undatus HOM05D002984 ORTHO05D003561 2.0e-28 131.0 89 69.7
Cc11_g10490 Coffea canephora HOM05D002984 ORTHO05D003561 4.5e-28 129.8 89 69.7
Pp3c25_2660 Physcomitrium patens HOM05D002984 ORTHO05D003561 4.5e-28 129.8 85 71.8
EL10Ac3g05929 Beta vulgaris HOM05D002984 ORTHO05D003561 5.9e-28 129.4 84 72.6
THA.LOC104808226 Tarenaya hassleriana HOM05D002984 ORTHO05D003561 7.7e-28 129.0 88 70.5
TWI31G1103 Tripterygium wilfordii HOM05D002984 ORTHO05D003561 1.0e-27 128.6 90 70.0
AT1G25540 Arabidopsis thaliana HOM05D002984 ORTHO05D003561 1.3e-27 128.3 84 72.6
Carub.0001s2494 Capsella rubella HOM05D002984 ORTHO05D003561 1.3e-27 128.3 84 72.6
Thhalv10006778m.g Eutrema salsugineum HOM05D002984 ORTHO05D003561 1.3e-27 128.3 84 72.6
PGR142G0084 Punica granatum HOM05D002984 ORTHO05D003561 1.3e-27 128.3 84 72.6
Sp1g22670 Schrenkiella parvula HOM05D002984 ORTHO05D003561 1.3e-27 128.3 84 72.6
Os09g0306700 Oryza sativa ssp. japonica HOM05D002984 ORTHO05D003561 1.7e-27 127.9 84 71.4
PGR142G1725 Punica granatum HOM05D002984 ORTHO05D003561 1.7e-27 127.9 88 69.3
SMO118G0238 Selaginella moellendorffii HOM05D002984 ORTHO05D003561 1.7e-27 127.9 93 66.7
Nn4g23754 Nelumbo nucifera HOM05D002984 ORTHO05D003561 2.2e-27 127.5 88 68.2
THA.LOC104821957 Tarenaya hassleriana HOM05D002984 ORTHO05D003561 2.2e-27 127.5 84 72.6
TWI79G1384 Tripterygium wilfordii HOM05D002984 ORTHO05D003561 2.2e-27 127.5 90 68.9
Cpa.g.sc1.211 Carica papaya HOM05D002984 ORTHO05D003561 2.9e-27 127.1 84 72.6
CiPaw.16G003700 Carya illinoinensis HOM05D002984 ORTHO05D003561 2.9e-27 127.1 89 68.5
CiPaw.16G003900 Carya illinoinensis HOM05D002984 ORTHO05D003561 2.9e-27 127.1 89 68.5
CSS0023076 Camellia sinensis var. sinensis HOM05D002984 ORTHO05D003561 3.8e-27 126.7 89 68.5
CANSAT64G2157 Cannabis sativa HOM05D002984 ORTHO05D003561 3.8e-27 126.7 89 68.5
CAN.G2.31 Capsicum annuum HOM05D002984 ORTHO05D003561 3.8e-27 126.7 84 71.4
Migut.E00313 Erythranthe guttata HOM05D002984 ORTHO05D003561 3.8e-27 126.7 83 72.3
Hma1.2p1_0030F.1_g018360 Hydrangea macrophylla HOM05D002984 ORTHO05D003561 3.8e-27 126.7 89 68.5
Sed0009737 Sechium edule HOM05D002984 ORTHO05D003561 3.8e-27 126.7 89 68.5
Solyc12g070100.2 Solanum lycopersicum HOM05D002984 ORTHO05D003561 3.8e-27 126.7 84 71.4
Sopen12g027160 Solanum pennellii HOM05D002984 ORTHO05D003561 3.8e-27 126.7 84 71.4
Actinidia14860 Actinidia chinensis HOM05D002984 ORTHO05D003561 5.0e-27 126.3 84 71.4
AL1G39760 Arabidopsis lyrata HOM05D002984 ORTHO05D003561 5.0e-27 126.3 83 72.3
CARHR025920 Cardamine hirsuta HOM05D002984 ORTHO05D003561 5.0e-27 126.3 83 72.3
Duzib251G0734 Durio zibethinus HOM05D002984 ORTHO05D003561 5.0e-27 126.3 89 68.5
Thecc.02G359700 Theobroma cacao HOM05D002984 ORTHO05D003561 5.0e-27 126.3 89 68.5
Atru.chr11.1335 Acer truncatum HOM05D002984 ORTHO05D003561 6.5e-27 125.9 89 68.5
Atru.chr11.1338 Acer truncatum HOM05D002984 ORTHO05D003561 6.5e-27 125.9 89 68.5
FvH4_4g27961 Fragaria vesca HOM05D002984 ORTHO05D003561 6.5e-27 125.9 89 67.4
FAN22G1846 Fragaria x ananassa HOM05D002984 ORTHO05D003561 6.5e-27 125.9 89 67.4
HanXRQChr16g0529571 Helianthus annuus HOM05D002984 ORTHO05D003561 6.5e-27 125.9 89 68.5
SGA_v2.0_scaffold124G33581 Striga asiatica HOM05D002984 ORTHO05D003561 6.5e-27 125.9 84 71.4
Gohir.D02G115800 Gossypium hirsutum HOM05D002984 ORTHO05D003561 8.5e-27 125.6 89 67.4
Gorai.005G138200 Gossypium raimondii HOM05D002984 ORTHO05D003561 8.5e-27 125.6 89 67.4
BcaB03g12090 Brassica carinata HOM05D002984 ORTHO05D003561 1.1e-26 125.2 84 71.4
BcaC05g26443 Brassica carinata HOM05D002984 ORTHO05D003561 1.1e-26 125.2 84 71.4
A09p39560 Brassica napus HOM05D002984 ORTHO05D003561 1.1e-26 125.2 84 71.4
C05p24920 Brassica napus HOM05D002984 ORTHO05D003561 1.1e-26 125.2 84 71.4
BolC5t31221H Brassica oleracea HOM05D002984 ORTHO05D003561 1.1e-26 125.2 84 71.4
BraA09t39454Z Brassica rapa HOM05D002984 ORTHO05D003561 1.1e-26 125.2 84 71.4
Ciclev10030710m.g Citrus clementina HOM05D002984 ORTHO05D003561 1.5e-26 124.8 88 68.2
MELO3C012221.2 Cucumis melo HOM05D002984 ORTHO05D003561 1.5e-26 124.8 88 68.2
CsaV3_5G034050 Cucumis sativus L. HOM05D002984 ORTHO05D003561 1.5e-26 124.8 88 68.2
Manes.14G098600 Manihot esculenta HOM05D002984 ORTHO05D003561 1.5e-26 124.8 89 67.4
Oeu010774.1 Olea europaea HOM05D002984 ORTHO05D003561 1.5e-26 124.8 88 68.2
Potri.008G117700 Populus trichocarpa HOM05D002984 ORTHO05D003561 1.5e-26 124.8 89 67.4
Potri.010G128600 Populus trichocarpa HOM05D002984 ORTHO05D003561 1.5e-26 124.8 89 67.4
QL01p044747 Quercus lobata HOM05D002984 ORTHO05D003561 1.5e-26 124.8 88 68.2
Sabra10G0097800 Salix brachista HOM05D002984 ORTHO05D003561 1.5e-26 124.8 89 67.4
HPP92_024319 Vanilla planifolia HOM05D002984 ORTHO05D003561 1.5e-26 124.8 84 69.0
GSVIVG01011939001 Vitis vinifera HOM05D002984 ORTHO05D003561 1.5e-26 124.8 88 68.2
BcaC01g01711 Brassica carinata HOM05D002984 ORTHO05D003561 2.5e-26 124.0 84 70.2
A08p27060 Brassica napus HOM05D002984 ORTHO05D003561 2.5e-26 124.0 84 70.2
C03p72840 Brassica napus HOM05D002984 ORTHO05D003561 2.5e-26 124.0 84 70.2
Aa31LG7G8960 Aethionema arabicum HOM05D002984 ORTHO05D003561 4.2e-26 123.2 83 71.1
Aqoxy3G00352 Aquilegia oxysepala HOM05D002984 ORTHO05D003561 4.2e-26 123.2 84 69.0
Glyma.01G086201 Glycine max HOM05D002984 ORTHO05D003561 4.2e-26 123.2 88 68.2
Glyma.02G098300 Glycine max HOM05D002984 ORTHO05D003561 4.2e-26 123.2 88 68.2
Lalb_Chr17g0341951 Lupinus albus HOM05D002984 ORTHO05D003561 4.2e-26 123.2 88 68.2
PSO017G4771 Papaver somniferum HOM05D002984 ORTHO05D003561 4.2e-26 123.2 84 70.2
PSO478G2088 Papaver somniferum HOM05D002984 ORTHO05D003561 4.2e-26 123.2 84 70.2
Phvul.003G028300 Phaseolus vulgaris HOM05D002984 ORTHO05D003561 4.2e-26 123.2 88 68.2
ECA234G4415 Erigeron canadensis HOM05D002984 ORTHO05D003561 5.5e-26 122.9 84 70.2
Lsat_1_v5_gn_4_19001 Lactuca sativa HOM05D002984 ORTHO05D003561 5.5e-26 122.9 84 70.2
Medtr5g054680 Medicago truncatula HOM05D002984 ORTHO05D003561 5.5e-26 122.9 88 68.2
Gohir.A03G097900 Gossypium hirsutum HOM05D002984 ORTHO05D003561 7.2e-26 122.5 84 69.0
RcHm_v2.0_Chr4g0435671 Rosa chinensis HOM05D002984 ORTHO05D003561 7.2e-26 122.5 89 66.3
MD16G1047200 Malus domestica HOM05D002984 ORTHO05D003561 9.4e-26 122.1 84 70.2
arahy.Tifrunner.gnm1.ann1.IQF6NS Arachis hypogaea HOM05D002984 ORTHO05D003561 1.2e-25 121.7 84 70.2
arahy.Tifrunner.gnm1.ann1.X8TPQJ Arachis hypogaea HOM05D002984 ORTHO05D003561 1.2e-25 121.7 84 70.2
Ca_19808_v3 Cicer arietinum L. HOM05D002984 ORTHO05D003561 1.2e-25 121.7 84 70.2
TPR.G38317 Trifolium pratense HOM05D002984 ORTHO05D003561 1.2e-25 121.7 84 70.2
Prupe.1G306600 Prunus persica HOM05D002984 ORTHO05D003561 2.1e-25 120.9 84 69.0
Lj2g0026621 Lotus japonicus HOM05D002984 ORTHO05D003561 1.4e-24 118.2 90 66.7
PSO017G3087 Papaver somniferum HOM05D002984 ORTHO05D003561 3.0e-24 117.1 84 67.9
Mapoly0022s0114 Marchantia polymorpha HOM05D002984 ORTHO05D003561 1.5e-23 114.8 85 65.9
CDE08G0495 Ceratophyllum demersum HOM05D002984 ORTHO05D003561 2.0e-23 114.4 85 68.2
Gorai.013G080300 Gossypium raimondii HOM05D002984 ORTHO05D003561 3.4e-23 113.6 111 55.0
Lalb_Chr10g0099841 Lupinus albus HOM05D002984 ORTHO05D003561 4.4e-23 113.2 88 61.4
Medtr1g013000 Medicago truncatula HOM05D002984 ORTHO05D003561 9.8e-23 112.1 87 63.2
CSS0024955 Camellia sinensis var. sinensis HOM05D002984 ORTHO05D003561 1.3e-22 111.7 89 66.3
Gohir.D13G070100 Gossypium hirsutum HOM05D002984 ORTHO05D003561 1.3e-22 111.7 110 54.5
MBI01_g09372_MAGBIO Magnolia biondii HOM05D002984 ORTHO05D003561 2.2e-22 110.9 89 62.9
Dinv04490 Davidia involucrata HOM05D002984 ORTHO05D003561 2.8e-22 110.5 76 71.1
Zm00001eb097890 Zea mays HOM05D002984 ORTHO05D003561 3.7e-22 110.2 72 70.8
ClCG05G022960 Citrullus lanatus HOM05D002984 ORTHO05D000550 4.8e-22 109.8 75 70.7
SEGI_01025 Sequoiadendron giganteum HOM05D001582 ORTHO05D011374 6.3e-22 109.4 145 42.1
MD16G1046800 Malus domestica HOM05D002984 ORTHO05D003561 8.3e-22 109.0 77 67.5
AUR62015392 Chenopodium quinoa HOM05D002984 ORTHO05D003561 1.1e-21 108.6 72 72.2
Sabra08G0089300 Salix brachista HOM05D002984 ORTHO05D003561 1.1e-21 108.6 79 69.6
VMungo1215G2122 Vigna mungo HOM05D002984 ORTHO05D003561 1.1e-21 108.6 74 71.6
Lj6C764G13 Lonicera japonica HOM05D002984 ORTHO05D003561 1.4e-21 108.2 73 71.2
DCAR_026720 Daucus carota HOM05D002984 ORTHO05D003561 1.8e-21 107.8 72 72.2
Lj6A762T42 Lonicera japonica HOM05D002984 ORTHO05D003561 1.8e-21 107.8 72 72.2
Rhsim09G0111200 Rhododendron simsii HOM05D002984 ORTHO05D000550 1.8e-21 107.8 72 72.2
Haze_17450 Corylus avellana HOM05D002984 ORTHO05D003561 4.1e-21 106.7 72 70.8
Ah.13g072880 Amaranthus hybridus HOM05D002984 ORTHO05D003561 9.1e-21 105.5 72 70.8
ATR0681G393 Amborella trichopoda HOM05D002984 ORTHO05D003561 7.7e-20 102.4 72 68.1
FAN25G0819 Fragaria x ananassa HOM05D002984 ORTHO05D009683 7.7e-20 102.4 73 67.1
Zm00001eb115900 Zea mays HOM05D000554 ORTHO05D000860 2.9e-19 100.5 94 55.3
Sabra02G0035000 Salix brachista HOM05D002984 ORTHO05D003561 3.8e-19 100.1 79 65.8
BcaC05g26654 Brassica carinata HOM05D002984 ORTHO05D003561 1.1e-18 98.6 72 66.7
Medtr5g054690 Medicago truncatula HOM05D002984 ORTHO05D003561 1.1e-18 98.6 89 57.3
Lsat_1_v5_gn_4_19021 Lactuca sativa HOM05D002984 ORTHO05D003561 5.5e-18 96.3 72 63.9
SEGI_39906 Sequoiadendron giganteum HOM05D002984 ORTHO05D003561 8.9e-16 89.0 43 100.0
Psat7g129560 Pisum sativum HOM05D002984 ORTHO05D003561 1.5e-15 88.2 66 66.7
HanXRQChr17g0552251 Helianthus annuus HOM05D002984 ORTHO05D003561 7.5e-15 85.9 74 56.8
Lj2g0014050 Lotus japonicus HOM05D002984 ORTHO05D003561 3.7e-14 83.6 72 56.9
FvH4_5g01900 Fragaria vesca HOM05D002984 ORTHO05D003561 9.2e-13 79.0 79 48.1
Nitab4.5_0000672g0090 Nicotiana tabacum HOM05D002984 ORTHO05D003561 1.2e-12 78.6 107 44.9
SMO356G0715 Selaginella moellendorffii HOM05D002984 ORTHO05D003561 1.7e-11 74.7 58 62.1
FvH4_6g01630 Fragaria vesca HOM05D002984 ORTHO05D003561 2.9e-11 73.9 91 44.0
Medtr7g077950 Medicago truncatula HOM05D002984 ORTHO05D003561 2.9e-11 73.9 72 54.2
SEGI_30862 Sequoiadendron giganteum HOM05D000038 ORTHO05D000689 6.6e-11 72.8 96 44.8
SEGI_12531 Sequoiadendron giganteum HOM05D000066 ORTHO05D000055 8.6e-11 72.4 180 31.7
SGA_v2.0_scaffold14G06838 Striga asiatica HOM05D002984 ORTHO05D003561 1.1e-10 72.0 91 48.4
FvH4_5g05460 Fragaria vesca HOM05D002984 ORTHO05D003561 7.3e-10 69.3 80 42.5
FAN13G2905 Fragaria x ananassa HOM05D002984 ORTHO05D003561 7.3e-10 69.3 80 42.5
FAN18G2442 Fragaria x ananassa HOM05D002984 ORTHO05D003561 7.3e-10 69.3 80 42.5
FAN18G3612 Fragaria x ananassa HOM05D002984 ORTHO05D003561 7.3e-10 69.3 80 42.5
Eucgr.D01061 Eucalyptus grandis HOM05D002984 ORTHO05D003561 3.6e-09 67.0 43 69.8
Lsat_1_v5_gn_3_60001 Lactuca sativa HOM05D002984 ORTHO05D003561 6.1e-09 66.2 73 46.6
Sc25g0002400 Simmondsia chinensis HOM05D002984 ORTHO05D003561 6.1e-09 66.2 43 69.8
TAR622G0040 Trochodendron aralioides HOM05D002984 ORTHO05D003561 8.0e-09 65.9 43 67.4
MBI15_g33904_MAGBIO Magnolia biondii HOM05D002984 ORTHO05D003561 5.2e-08 63.2 43 65.1
RcHm_v2.0_Chr7g0240991 Rosa chinensis HOM05D002984 ORTHO05D003561 6.8e-08 62.8 43 65.1
Solyc05g009710.4 Solanum lycopersicum HOM05D002984 ORTHO05D003561 6.8e-08 62.8 86 40.7
Sopen05g005530 Solanum pennellii HOM05D002984 ORTHO05D003561 2.0e-07 61.2 86 39.5
QL10p023587 Quercus lobata HOM05D002984 ORTHO05D014229 5.8e-07 59.7 79 39.2
Sc04g0003680 Simmondsia chinensis HOM05D002984 ORTHO05D003561 7.5e-07 59.3 55 49.1
SEGI_04804 Sequoiadendron giganteum HOM05D003236 ORTHO05D003620 1.3e-06 58.5 36 77.8
SEGI_14893 Sequoiadendron giganteum HOM05D000064 ORTHO05D000281 2.2e-06 57.8 36 72.2
ECA246G1507 Erigeron canadensis HOM05D002984 ORTHO05D003561 6.4e-06 56.2 69 42.0


User provided reference genes

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