Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_05114 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 3.1e-89 332.0 201 100.0
CiPaw.03G010300 Carya illinoinensis HOM05D003469 ORTHO05D004084 1.0e-52 210.7 147 69.4
Haze_14033 Corylus avellana HOM05D003469 ORTHO05D004084 1.5e-51 206.8 147 67.3
PSO170G4646 Papaver somniferum HOM05D003469 ORTHO05D004084 1.5e-51 206.8 145 68.3
TAR628G0771 Trochodendron aralioides HOM05D003469 ORTHO05D004084 2.0e-51 206.5 145 67.6
CDE05G0531 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 3.4e-51 205.7 146 69.2
Nn5g27173 Nelumbo nucifera HOM05D003469 ORTHO05D004084 9.8e-51 204.1 145 66.2
QL09p054764 Quercus lobata HOM05D003469 ORTHO05D004084 1.9e-49 199.9 146 66.4
vmacro00914 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 5.4e-49 198.4 146 67.1
arahy.Tifrunner.gnm1.ann1.M9HC5A Arachis hypogaea HOM05D003469 ORTHO05D004084 3.5e-48 195.7 145 68.3
TAR633G1289 Trochodendron aralioides HOM05D003469 ORTHO05D004084 3.5e-48 195.7 145 64.1
arahy.Tifrunner.gnm1.ann1.046I3L Arachis hypogaea HOM05D003469 ORTHO05D004084 1.3e-47 193.7 145 67.6
Glyma.12G027700 Glycine max HOM05D003469 ORTHO05D004084 1.3e-47 193.7 145 65.5
Glyma.11G102000 Glycine max HOM05D003469 ORTHO05D004084 3.0e-47 192.6 145 65.5
Rhsim12G0000800 Rhododendron simsii HOM05D003469 ORTHO05D004084 5.0e-47 191.8 146 65.1
Thecc.08G168800 Theobroma cacao HOM05D003469 ORTHO05D004084 8.6e-47 191.0 145 65.5
CAN.G14.42 Capsicum annuum HOM05D003469 ORTHO05D004084 2.5e-46 189.5 146 65.8
Phvul.011G031000 Phaseolus vulgaris HOM05D003469 ORTHO05D004084 1.2e-45 187.2 145 63.4
MBI03_g18641_MAGBIO Magnolia biondii HOM05D003469 ORTHO05D004084 2.1e-45 186.4 146 64.4
Solyc06g063420.4 Solanum lycopersicum HOM05D003469 ORTHO05D004084 2.1e-45 186.4 147 64.6
TWI38G1177 Tripterygium wilfordii HOM05D003469 ORTHO05D004084 2.8e-45 186.0 145 63.4
Sopen06g022880 Solanum pennellii HOM05D003469 ORTHO05D004084 4.7e-45 185.3 147 64.6
VMungo1127G1455 Vigna mungo HOM05D003469 ORTHO05D004084 4.7e-45 185.3 145 62.8
SMO164G0159 Selaginella moellendorffii HOM05D003469 ORTHO05D004084 8.0e-45 184.5 148 60.8
Lalb_Chr07g0195581 Lupinus albus HOM05D003469 ORTHO05D004084 6.8e-44 181.4 146 63.0
Lj1g0005967 Lotus japonicus HOM05D003469 ORTHO05D004084 3.4e-43 179.1 145 62.1
PGSC0003DMG400033134 Solanum tuberosum HOM05D003469 ORTHO05D004084 3.4e-43 179.1 131 67.2
Eucgr.G01221 Eucalyptus grandis HOM05D003469 ORTHO05D004084 1.3e-42 177.2 149 60.4
Ciclev10019721m.g Citrus clementina HOM05D003469 ORTHO05D004084 1.7e-42 176.8 144 61.1
Pp3c8_10360 Physcomitrium patens HOM05D003469 ORTHO05D004084 2.2e-42 176.4 151 61.6
Pp3c8_10366 Physcomitrium patens HOM05D003469 ORTHO05D004084 2.2e-42 176.4 151 61.6
DCAR_001477 Daucus carota HOM05D003469 ORTHO05D004084 3.7e-42 175.6 146 61.0
RcHm_v2.0_Chr2g0151071 Rosa chinensis HOM05D003469 ORTHO05D004084 6.4e-42 174.9 146 60.3
RcHm_v2.0_Chr2g0151101 Rosa chinensis HOM05D003469 ORTHO05D004084 6.4e-42 174.9 146 60.3
Peaxi162Scf00818g00323 Petunia axillaris HOM05D003469 ORTHO05D004084 8.3e-42 174.5 148 60.8
Actinidia21939 Actinidia chinensis HOM05D003469 ORTHO05D004084 1.1e-41 174.1 145 58.6
Sc09g0010840 Simmondsia chinensis HOM05D003469 ORTHO05D004084 1.1e-41 174.1 145 57.9
FvH4_6g37900 Fragaria vesca HOM05D003469 ORTHO05D004084 1.4e-41 173.7 146 59.6
FAN14G5376 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.4e-41 173.7 146 59.6
Cc00_g11470 Coffea canephora HOM05D003469 ORTHO05D004084 4.1e-41 172.2 151 58.3
ECA232G2309 Erigeron canadensis HOM05D003469 ORTHO05D004084 4.1e-41 172.2 146 59.6
MD09G1155000 Malus domestica HOM05D003469 ORTHO05D004084 4.1e-41 172.2 145 59.3
FAN02G0848 Fragaria x ananassa HOM05D003469 ORTHO05D004084 7.0e-41 171.4 146 58.9
Duzib235G0325 Durio zibethinus HOM05D003469 ORTHO05D004084 9.2e-41 171.0 145 59.3
FAN09G4617 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.1e-40 169.9 146 58.2
Lj9C162G1 Lonicera japonica HOM05D003469 ORTHO05D004084 2.1e-40 169.9 145 59.3
AagrBONN_evm.TU.Sc2ySwM_362.2764 Anthoceros agrestis HOM05D003469 ORTHO05D004084 6.0e-40 168.3 148 56.1
Prupe.8G070000 Prunus persica HOM05D003469 ORTHO05D004084 6.0e-40 168.3 145 59.3
SGA_v2.0_scaffold8G04312 Striga asiatica HOM05D003469 ORTHO05D004084 7.8e-40 167.9 146 55.5
MSTRG.1003 Avicennia marina HOM05D003469 ORTHO05D004084 5.1e-39 165.2 148 57.4
GSVIVG01036699001 Vitis vinifera HOM05D003469 ORTHO05D004084 5.1e-39 165.2 146 56.2
EL10Ac5g10861 Beta vulgaris HOM05D003469 ORTHO05D004084 8.6e-39 164.5 145 55.9
Ca_19034_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 8.6e-39 164.5 145 58.6
Migut.C00329 Erythranthe guttata HOM05D003469 ORTHO05D004084 1.5e-38 163.7 146 56.2
CANSAT78G0348 Cannabis sativa HOM05D003469 ORTHO05D004084 1.9e-38 163.3 146 58.2
Gorai.008G247300 Gossypium raimondii HOM05D003469 ORTHO05D004084 2.5e-38 162.9 145 59.3
Manes.06G016500 Manihot esculenta HOM05D003469 ORTHO05D004084 3.3e-38 162.5 145 57.2
HPP92_015320 Vanilla planifolia HOM05D003469 ORTHO05D004084 4.3e-38 162.2 146 54.1
AUR62031062 Chenopodium quinoa HOM05D003469 ORTHO05D004084 9.5e-38 161.0 145 54.5
Gohir.D12G231100 Gossypium hirsutum HOM05D003469 ORTHO05D004084 9.5e-38 161.0 143 59.4
Atru.chr9.1130 Acer truncatum HOM05D003469 ORTHO05D004084 1.2e-37 160.6 147 56.5
HanXRQChr09g0266911 Helianthus annuus HOM05D003469 ORTHO05D004084 1.2e-37 160.6 146 53.4
Lsat_1_v5_gn_4_131841 Lactuca sativa HOM05D003469 ORTHO05D004084 1.2e-37 160.6 146 54.1
AUR62008300 Chenopodium quinoa HOM05D003469 ORTHO05D004084 2.1e-37 159.8 145 54.5
Medtr4g079390 Medicago truncatula HOM05D003469 ORTHO05D004084 2.8e-37 159.5 146 57.5
Hund09398 Selenicereus undatus HOM05D003469 ORTHO05D004084 3.6e-37 159.1 145 55.9
AUR62039415 Chenopodium quinoa HOM05D003469 ORTHO05D004084 4.0e-36 155.6 145 55.2
Aqoxy6G00028 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 6.8e-36 154.8 145 54.5
Gohir.A12G230000 Gossypium hirsutum HOM05D003469 ORTHO05D004084 1.5e-35 153.7 145 55.9
ATR1089G047 Amborella trichopoda HOM05D003469 ORTHO05D004084 3.4e-35 152.5 150 54.7
Medtr4g074860 Medicago truncatula HOM05D003469 ORTHO05D004084 3.4e-35 152.5 145 55.2
CSS0010807 Camellia sinensis var. sinensis HOM05D003469 ORTHO05D004084 2.4e-33 146.4 145 53.1
MD17G1141100 Malus domestica HOM05D003469 ORTHO05D004084 3.2e-33 146.0 122 59.0
Nitab4.5_0003757g0100 Nicotiana tabacum HOM05D003469 ORTHO05D004084 4.1e-33 145.6 146 54.1
Nitab4.5_0002354g0130 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.2e-32 144.1 146 54.1
ClCG07G013810 Citrullus lanatus HOM05D003469 ORTHO05D004084 2.1e-32 143.3 145 53.1
TPR.G38733 Trifolium pratense HOM05D003469 ORTHO05D004084 3.5e-32 142.5 145 53.8
Lj9C173G0 Lonicera japonica HOM05D003469 ORTHO05D004084 7.8e-32 141.4 147 51.0
Dinv28114 Davidia involucrata HOM05D003469 ORTHO05D004084 2.3e-31 139.8 147 52.4
CsaV3_3G043790 Cucumis sativus L. HOM05D003469 ORTHO05D004084 3.9e-31 139.0 145 51.7
MELO3C013095.2 Cucumis melo HOM05D003469 ORTHO05D004084 6.6e-31 138.3 145 51.7
Sed0013857 Sechium edule HOM05D003469 ORTHO05D004084 1.9e-30 136.7 146 52.7
Lj9A422T76 Lonicera japonica HOM05D003469 ORTHO05D004084 7.3e-30 134.8 112 63.4
Potri.013G128900 Populus trichocarpa HOM05D003469 ORTHO05D004084 7.3e-30 134.8 148 52.0
Peaxi162Scf00015g00107 Petunia axillaris HOM05D003469 ORTHO05D004084 1.2e-29 134.0 147 45.6
Aqoxy4G02849 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 1.1e-28 131.0 143 52.4
Mapoly0024s0108 Marchantia polymorpha HOM05D003469 ORTHO05D004084 1.4e-28 130.6 98 59.2
Zm00001eb171180 Zea mays HOM05D003469 ORTHO05D004084 1.8e-28 130.2 153 46.4
Os11g0266800 Oryza sativa ssp. japonica HOM05D003469 ORTHO05D004084 2.4e-28 129.8 153 45.1
Ca_16139_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 4.0e-28 129.0 100 59.0
RcHm_v2.0_Chr6g0293861 Rosa chinensis HOM05D003469 ORTHO05D004084 5.2e-28 128.6 151 47.0
Nitab4.5_0002906g0070 Nicotiana tabacum HOM05D003469 ORTHO05D004084 8.9e-28 127.9 147 46.3
Nitab4.5_0005224g0040 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.5e-27 127.1 147 44.2
FAN27G0386 Fragaria x ananassa HOM05D003469 ORTHO05D004084 7.6e-27 124.8 151 45.7
Thhalv10006758m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 9.9e-27 124.4 95 55.8
FvH4_2g25610 Fragaria vesca HOM05D003469 ORTHO05D004084 2.2e-26 123.2 148 45.9
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.2e-26 123.2 148 45.9
FAN15G0576 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.9e-26 122.9 151 45.0
COL.COLO4_25120 Corchorus olitorius HOM05D003469 ORTHO05D004084 6.4e-26 121.7 134 52.2
AL1G30030 Arabidopsis lyrata HOM05D003469 ORTHO05D004084 1.4e-25 120.6 95 53.7
AT1G17680 Arabidopsis thaliana HOM05D003469 ORTHO05D004084 2.4e-25 119.8 95 53.7
BolC4t22588H Brassica oleracea HOM05D003469 ORTHO05D004084 2.4e-25 119.8 153 43.1
BcaB07g34024 Brassica carinata HOM05D003469 ORTHO05D004084 4.2e-25 119.0 153 43.8
BcaC02g11929 Brassica carinata HOM05D003469 ORTHO05D004084 4.2e-25 119.0 153 44.4
C04p09790 Brassica napus HOM05D003469 ORTHO05D004084 4.2e-25 119.0 153 44.4
Oeu019664.1 Olea europaea HOM05D003469 ORTHO05D004084 4.2e-25 119.0 81 61.7
Carub.0001s1741 Capsella rubella HOM05D003469 ORTHO05D004084 1.2e-24 117.5 153 43.1
Sp1g15780 Schrenkiella parvula HOM05D003469 ORTHO05D004084 1.2e-24 117.5 132 44.7
unitig_26.g9845 Utricularia gibba HOM05D003469 ORTHO05D004084 1.2e-24 117.5 171 38.0
Aa31LG7G2510 Aethionema arabicum HOM05D003469 ORTHO05D004084 4.6e-24 115.5 93 52.7
BcaC05g25689 Brassica carinata HOM05D003469 ORTHO05D004084 1.3e-23 114.0 140 43.6
C05p16090 Brassica napus HOM05D003469 ORTHO05D004084 1.3e-23 114.0 140 43.6
BolC5t30309H Brassica oleracea HOM05D003469 ORTHO05D004084 1.3e-23 114.0 140 43.6
A06p13570 Brassica napus HOM05D003469 ORTHO05D004084 2.3e-23 113.2 140 43.6
BraA06t24509Z Brassica rapa HOM05D003469 ORTHO05D004084 2.3e-23 113.2 140 43.6
Ah.15g095790 Amaranthus hybridus HOM05D003469 ORTHO05D004084 3.0e-23 112.8 145 42.1
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 3.0e-23 112.8 93 52.7
THA.LOC104800339 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 6.6e-23 111.7 142 39.4
SalBow7G2370 Salvia bowleyana HOM05D003469 ORTHO05D004084 1.5e-22 110.5 146 45.2
THA.LOC104807542 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 2.5e-22 109.8 142 39.4
Dinv15687 Davidia involucrata HOM05D003469 ORTHO05D004084 6.2e-21 105.1 133 48.1
EL10Ac5g10434 Beta vulgaris HOM05D003469 ORTHO05D004084 2.4e-20 103.2 164 39.0
TPR.G32330 Trifolium pratense HOM05D003469 ORTHO05D004084 4.0e-20 102.4 99 54.5
FvH4_6g38050 Fragaria vesca HOM05D003469 ORTHO05D004084 3.5e-16 89.4 88 56.8
Ciclev10026956m.g Citrus clementina HOM05D003469 ORTHO05D004084 7.8e-16 88.2 81 54.3
SHI03012 Sapria himalayana HOM05D003469 ORTHO05D004084 3.0e-15 86.3 90 46.7
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 3.3e-14 82.8 101 35.6
Psat0s2166g0160 Pisum sativum HOM05D003469 ORTHO05D004084 7.6e-11 71.6 84 44.0
Aa31LG2G17590 Aethionema arabicum HOM05D003469 ORTHO05D004084 1.9e-09 67.0 50 54.0


User provided reference genes

Program Settings