Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_04839 Sequoiadendron giganteum HOM05D001090 ORTHO05D023776 2.4e-60 235.3 120 100.0
Lj5g0004951 Lotus japonicus HOM05D001090 ORTHO05D002687 9.1e-36 153.7 99 77.8
Ca_10240_v3 Cicer arietinum L. HOM05D001090 ORTHO05D002687 2.0e-35 152.5 99 78.8
TPR.G3065 Trifolium pratense HOM05D001090 ORTHO05D002687 3.5e-35 151.8 99 76.8
CsaV3_5G029690 Cucumis sativus L. HOM05D001090 ORTHO05D002687 4.5e-35 151.4 94 80.9
Potri.014G112266 Populus trichocarpa HOM05D001090 ORTHO05D002687 4.5e-35 151.4 83 89.2
Sabra14G0082600 Salix brachista HOM05D001090 ORTHO05D002687 4.5e-35 151.4 83 89.2
Aqoxy2G02491 Aquilegia oxysepala HOM05D001090 ORTHO05D002687 5.9e-35 151.0 82 90.2
Lj1C8G4 Lonicera japonica HOM05D001090 ORTHO05D002687 5.9e-35 151.0 120 65.0
MELO3C011812.2 Cucumis melo HOM05D001090 ORTHO05D002687 7.7e-35 150.6 94 79.8
AL6G51500 Arabidopsis lyrata HOM05D001090 ORTHO05D002687 1.0e-34 150.2 117 67.5
ECA247G3754 Erigeron canadensis HOM05D001090 ORTHO05D002687 1.0e-34 150.2 90 83.3
Mapoly0048s0095 Marchantia polymorpha HOM05D001090 ORTHO05D002687 1.0e-34 150.2 108 70.4
CDE02G4194 Ceratophyllum demersum HOM05D001090 ORTHO05D002687 1.3e-34 149.8 107 72.0
Thhalv10028392m.g Eutrema salsugineum HOM05D001090 ORTHO05D002687 1.3e-34 149.8 117 67.5
Medtr1g086050 Medicago truncatula HOM05D001090 ORTHO05D002687 1.3e-34 149.8 99 75.8
BcaB01g02379 Brassica carinata HOM05D001090 ORTHO05D002687 1.7e-34 149.4 115 69.6
BcaC01g06802 Brassica carinata HOM05D001090 ORTHO05D002687 1.7e-34 149.4 115 69.6
A03p31480 Brassica napus HOM05D001090 ORTHO05D002687 1.7e-34 149.4 115 69.6
C03p38470 Brassica napus HOM05D001090 ORTHO05D002687 1.7e-34 149.4 115 69.6
BolC3t16120H Brassica oleracea HOM05D001090 ORTHO05D002687 1.7e-34 149.4 115 69.6
BraA03t12328Z Brassica rapa HOM05D001090 ORTHO05D002687 1.7e-34 149.4 115 69.6
Haze_05148 Corylus avellana HOM05D001090 ORTHO05D002687 1.7e-34 149.4 119 70.6
Lalb_Chr02g0147151 Lupinus albus HOM05D001090 ORTHO05D002687 1.7e-34 149.4 99 75.8
MD17G1285000 Malus domestica HOM05D001090 ORTHO05D002687 1.7e-34 149.4 82 89.0
Atru.chr5.862 Acer truncatum HOM05D001090 ORTHO05D002687 2.2e-34 149.1 117 68.4
Cfa004913 Carpinus fangiana HOM05D001090 ORTHO05D002687 2.2e-34 149.1 119 69.7
CARHR249770 Cardamine hirsuta HOM05D001090 ORTHO05D002687 2.9e-34 148.7 117 66.7
Gorai.008G134600 Gossypium raimondii HOM05D001090 ORTHO05D002687 2.9e-34 148.7 112 70.5
HanXRQChr10g0286461 Helianthus annuus HOM05D001090 ORTHO05D002687 2.9e-34 148.7 77 92.2
Gohir.A12G119866 Gossypium hirsutum HOM05D001090 ORTHO05D002687 3.8e-34 148.3 112 70.5
Gohir.D12G123500 Gossypium hirsutum HOM05D001090 ORTHO05D002687 3.8e-34 148.3 112 70.5
Rhsim01G0000500 Rhododendron simsii HOM05D001090 ORTHO05D002687 3.8e-34 148.3 119 68.9
THA.LOC104801325 Tarenaya hassleriana HOM05D001090 ORTHO05D002687 3.8e-34 148.3 116 68.1
Actinidia21339 Actinidia chinensis HOM05D001090 ORTHO05D002687 5.0e-34 147.9 122 63.9
Psat6g158920 Pisum sativum HOM05D001090 ORTHO05D002687 5.0e-34 147.9 120 66.7
RcHm_v2.0_Chr3g0485781 Rosa chinensis HOM05D001090 ORTHO05D002687 5.0e-34 147.9 82 87.8
Thecc.01G325300 Theobroma cacao HOM05D001090 ORTHO05D002687 5.0e-34 147.9 83 85.5
AT4G01800 Arabidopsis thaliana HOM05D001090 ORTHO05D002687 6.5e-34 147.5 117 66.7
arahy.Tifrunner.gnm1.ann1.HFGS9U Arachis hypogaea HOM05D001090 ORTHO05D002687 6.5e-34 147.5 115 67.0
CiPaw.08G082600 Carya illinoinensis HOM05D001090 ORTHO05D002687 6.5e-34 147.5 83 85.5
Ciclev10018714m.g Citrus clementina HOM05D001090 ORTHO05D002687 6.5e-34 147.5 121 66.9
Nn4g25345 Nelumbo nucifera HOM05D001090 ORTHO05D002687 6.5e-34 147.5 83 85.5
Aa31LG5G1560 Aethionema arabicum HOM05D001090 ORTHO05D002687 8.5e-34 147.1 88 80.7
Glyma.02G007700 Glycine max HOM05D001090 ORTHO05D002687 8.5e-34 147.1 119 66.4
GSVIVG01028249001 Vitis vinifera HOM05D001090 ORTHO05D002687 8.5e-34 147.1 122 64.8
Ah.02g112710 Amaranthus hybridus HOM05D001090 ORTHO05D002687 1.1e-33 146.7 82 86.6
Carub.0006s3542 Capsella rubella HOM05D001090 ORTHO05D002687 1.1e-33 146.7 105 71.4
Dinv33172 Davidia involucrata HOM05D001090 ORTHO05D002687 1.1e-33 146.7 120 65.8
Hund11623 Selenicereus undatus HOM05D001090 ORTHO05D002687 1.1e-33 146.7 119 69.7
Glyma.10G137800 Glycine max HOM05D001090 ORTHO05D002687 1.4e-33 146.4 89 79.8
QL12p034948 Quercus lobata HOM05D001090 ORTHO05D002687 1.4e-33 146.4 83 85.5
VMungo0720G1338 Vigna mungo HOM05D001090 ORTHO05D023776 1.4e-33 146.4 83 83.1
Duzib138G0905 Durio zibethinus HOM05D001090 ORTHO05D002687 1.9e-33 146.0 116 67.2
Manes.05G009000 Manihot esculenta HOM05D001090 ORTHO05D002687 1.9e-33 146.0 83 84.3
vmacro02357 Vaccinium macrocarpon HOM05D001090 ORTHO05D023776 1.9e-33 146.0 119 68.1
Lsat_1_v5_gn_9_6960 Lactuca sativa HOM05D001090 ORTHO05D002687 2.5e-33 145.6 101 74.3
Prupe.3G002700 Prunus persica HOM05D001090 ORTHO05D002687 2.5e-33 145.6 118 63.6
Sp6g01650 Schrenkiella parvula HOM05D001090 ORTHO05D002687 2.5e-33 145.6 120 65.0
TAR633G2711 Trochodendron aralioides HOM05D001090 ORTHO05D002687 2.5e-33 145.6 77 89.6
EL10As5g23621 Beta vulgaris HOM05D001090 ORTHO05D002687 3.2e-33 145.2 82 85.4
AUR62038567 Chenopodium quinoa HOM05D001090 ORTHO05D002687 3.2e-33 145.2 115 65.2
AUR62042009 Chenopodium quinoa HOM05D001090 ORTHO05D002687 3.2e-33 145.2 115 65.2
MBI19_g30287_MAGBIO Magnolia biondii HOM05D001090 ORTHO05D002687 3.2e-33 145.2 120 69.2
Phvul.007G209266 Phaseolus vulgaris HOM05D001090 ORTHO05D002687 3.2e-33 145.2 82 82.9
TWI14G1058 Tripterygium wilfordii HOM05D001090 ORTHO05D002687 3.2e-33 145.2 76 90.8
CAN.G100.59 Capsicum annuum HOM05D001090 ORTHO05D002687 4.2e-33 144.8 120 64.2
Migut.D00012 Erythranthe guttata HOM05D001090 ORTHO05D002687 4.2e-33 144.8 77 88.3
FAN26G0951 Fragaria x ananassa HOM05D001090 ORTHO05D002687 4.2e-33 144.8 119 63.9
Solyc01g080840.3 Solanum lycopersicum HOM05D001090 ORTHO05D002687 4.2e-33 144.8 120 64.2
PGSC0003DMG400001123 Solanum tuberosum HOM05D001090 ORTHO05D002687 4.2e-33 144.8 120 64.2
HPP92_018286 Vanilla planifolia HOM05D001090 ORTHO05D002687 4.2e-33 144.8 97 74.2
AagrBONN_evm.TU.Sc2ySwM_228.4155 Anthoceros agrestis HOM05D001090 ORTHO05D002687 5.5e-33 144.4 83 83.1
CSS0020175 Camellia sinensis var. sinensis HOM05D001090 ORTHO05D002687 5.5e-33 144.4 128 65.6
Eucgr.A01004 Eucalyptus grandis HOM05D001090 ORTHO05D002687 5.5e-33 144.4 103 71.8
Hma1.2p1_0484F.1_g162970 Hydrangea macrophylla HOM05D001090 ORTHO05D002687 5.5e-33 144.4 103 71.8
Oeu047220.1 Olea europaea HOM05D001090 ORTHO05D002687 5.5e-33 144.4 115 71.3
Sopen01g030640 Solanum pennellii HOM05D001090 ORTHO05D002687 5.5e-33 144.4 120 64.2
ATR0796G193 Amborella trichopoda HOM05D001090 ORTHO05D002687 7.2e-33 144.1 128 63.3
FAN19G3148 Fragaria x ananassa HOM05D001090 ORTHO05D002687 7.2e-33 144.1 119 63.9
FAN28G1233 Fragaria x ananassa HOM05D001090 ORTHO05D002687 7.2e-33 144.1 119 63.9
Nitab4.5_0003092g0020 Nicotiana tabacum HOM05D001090 ORTHO05D002687 7.2e-33 144.1 77 87.0
Sc17g0000040 Simmondsia chinensis HOM05D001090 ORTHO05D002687 7.2e-33 144.1 125 63.2
arahy.Tifrunner.gnm1.ann1.CW9EKZ Arachis hypogaea HOM05D001090 ORTHO05D002687 9.4e-33 143.7 115 66.1
Nitab4.5_0000222g0370 Nicotiana tabacum HOM05D001090 ORTHO05D002687 9.4e-33 143.7 120 63.3
PSO761G0525 Papaver somniferum HOM05D001090 ORTHO05D002687 9.4e-33 143.7 110 70.0
Sed0004783 Sechium edule HOM05D001090 ORTHO05D002687 9.4e-33 143.7 120 65.0
FAN23G2191 Fragaria x ananassa HOM05D001090 ORTHO05D002687 1.2e-32 143.3 119 63.9
PSO210G4393 Papaver somniferum HOM05D001090 ORTHO05D002687 1.2e-32 143.3 110 69.1
unitig_90.g27449 Utricularia gibba HOM05D001090 ORTHO05D007803 1.6e-32 142.9 103 68.9
CANSAT25G3239 Cannabis sativa HOM05D001090 ORTHO05D002687 2.1e-32 142.5 119 63.9
Cc01_g21780 Coffea canephora HOM05D001090 ORTHO05D002687 2.1e-32 142.5 111 67.6
PGR042G2980 Punica granatum HOM05D001090 ORTHO05D002687 2.1e-32 142.5 122 62.3
Glyma.04G053600 Glycine max HOM05D001090 ORTHO05D023776 2.7e-32 142.1 89 76.4
Peaxi162Scf00309g00916 Petunia axillaris HOM05D001090 ORTHO05D002687 2.7e-32 142.1 119 63.0
Peaxi162Scf00661g00045 Petunia axillaris HOM05D002176 ORTHO05D026028 2.7e-32 142.1 119 63.0
Zm00001eb130760 Zea mays HOM05D001090 ORTHO05D002687 2.7e-32 142.1 120 62.5
SGA_v2.0_scaffold417G51250 Striga asiatica HOM05D001090 ORTHO05D002687 4.7e-32 141.4 119 61.3
CBR_g2809 Chara braunii HOM05D001090 ORTHO05D002687 6.1e-32 141.0 119 61.3
DCAR_005716 Daucus carota HOM05D001090 ORTHO05D002687 6.1e-32 141.0 100 72.0
DCAR_002937 Daucus carota HOM05D001090 ORTHO05D002687 1.8e-31 139.4 94 75.5
Pp3c20_6050 Physcomitrium patens HOM05D001090 ORTHO05D002687 2.3e-31 139.0 103 69.9
SMO228G0092 Selaginella moellendorffii HOM05D001090 ORTHO05D002687 3.0e-31 138.7 84 77.4
MCO03G029 Micromonas commoda HOM05D001090 ORTHO05D002687 8.8e-31 137.1 77 85.7
Cpa.g.sc57.15 Carica papaya HOM05D001090 ORTHO05D002687 9.7e-30 133.7 70 91.4
Cre12.g517900 Chlamydomonas reinhardtii HOM05D001090 ORTHO05D002687 4.2e-25 118.2 73 72.6
PRCOL_00000237 Prasinoderma coloniale HOM05D001090 ORTHO05D002687 8.0e-24 114.0 91 61.5
arahy.Tifrunner.gnm1.ann1.YTY742 Arachis hypogaea HOM05D001090 ORTHO05D023776 1.7e-18 96.3 54 87.0
Peaxi162Scf00073g00236 Petunia axillaris HOM05D002176 ORTHO05D026028 1.9e-17 92.8 92 55.4
Haze_26618 Corylus avellana HOM05D001090 ORTHO05D002687 7.2e-09 64.3 112 37.5
Aa31LG7G5620 Aethionema arabicum HOM05D001090 ORTHO05D002687 8.0e-08 60.8 71 39.4
A08p28880 Brassica napus HOM05D001090 ORTHO05D002687 1.4e-07 60.1 71 39.4
C08p20970 Brassica napus HOM05D001090 ORTHO05D002687 1.4e-07 60.1 71 39.4
BolC8t49734H Brassica oleracea HOM05D001090 ORTHO05D002687 1.4e-07 60.1 71 39.4
BraA08t34819Z Brassica rapa HOM05D001090 ORTHO05D002687 1.4e-07 60.1 71 39.4
CARHR022000 Cardamine hirsuta HOM05D001090 ORTHO05D002687 1.4e-07 60.1 71 39.4
Thhalv10006535m.g Eutrema salsugineum HOM05D001090 ORTHO05D002687 1.4e-07 60.1 71 39.4
Carub.0001s2107 Capsella rubella HOM05D001090 ORTHO05D002687 1.8e-07 59.7 71 39.4
Sp1g19170 Schrenkiella parvula HOM05D001090 ORTHO05D002687 1.8e-07 59.7 71 39.4
AL1G34790 Arabidopsis lyrata HOM05D001090 ORTHO05D002687 2.3e-07 59.3 71 38.0
AT1G21650 Arabidopsis thaliana HOM05D001090 ORTHO05D002687 2.3e-07 59.3 71 38.0
THA.LOC104812087 Tarenaya hassleriana HOM05D001090 ORTHO05D002687 3.0e-07 58.9 71 38.0
Sc10g0008070 Simmondsia chinensis HOM05D001090 ORTHO05D002687 5.2e-07 58.2 71 33.8
Ciclev10000116m.g Citrus clementina HOM05D001090 ORTHO05D002687 6.8e-07 57.8 71 35.2
MD00G1100600 Malus domestica HOM05D001090 ORTHO05D002687 8.9e-07 57.4 71 33.8
RcHm_v2.0_Chr6g0296621 Rosa chinensis HOM05D001090 ORTHO05D002687 8.9e-07 57.4 71 33.8
Lsat_1_v5_gn_4_134081 Lactuca sativa HOM05D001090 ORTHO05D002687 1.2e-06 57.0 71 33.8
EL10Ac1g01340 Beta vulgaris HOM05D001090 ORTHO05D002687 1.5e-06 56.6 71 33.8
AUR62007722 Chenopodium quinoa HOM05D001090 ORTHO05D002687 1.5e-06 56.6 71 35.2
MCO14G401 Micromonas commoda HOM05D001090 ORTHO05D002687 1.5e-06 56.6 81 29.6
Oeu051970.1 Olea europaea HOM05D001090 ORTHO05D002687 1.5e-06 56.6 71 33.8
Potri.002G078000 Populus trichocarpa HOM05D001090 ORTHO05D002687 1.5e-06 56.6 71 33.8
Prupe.1G490400 Prunus persica HOM05D001090 ORTHO05D002687 1.5e-06 56.6 71 33.8
SalBow2G0524 Salvia bowleyana HOM05D001090 ORTHO05D002687 1.5e-06 56.6 71 35.2
unitig_22.g6741 Utricularia gibba HOM05D001090 ORTHO05D002687 1.5e-06 56.6 71 32.4
ECA232G2805 Erigeron canadensis HOM05D001090 ORTHO05D002687 2.0e-06 56.2 68 35.3
Gohir.A02G110100 Gossypium hirsutum HOM05D001090 ORTHO05D002687 2.0e-06 56.2 71 33.8
FvH4_2g27750 Fragaria vesca HOM05D001090 ORTHO05D002687 2.6e-06 55.8 71 32.4
FAN15G0022 Fragaria x ananassa HOM05D001090 ORTHO05D002687 2.6e-06 55.8 71 32.4
FAN24G1236 Fragaria x ananassa HOM05D001090 ORTHO05D002687 2.6e-06 55.8 71 32.4
arahy.Tifrunner.gnm1.ann1.V5YSST Arachis hypogaea HOM05D001090 ORTHO05D002687 3.4e-06 55.5 70 34.3
MSTRG.24175 Avicennia marina HOM05D001090 ORTHO05D002687 3.4e-06 55.5 71 32.4
CAN.G342.13 Capsicum annuum HOM05D001090 ORTHO05D002687 3.4e-06 55.5 71 33.8
HanXRQChr09g0260691 Helianthus annuus HOM05D001090 ORTHO05D002687 3.4e-06 55.5 68 33.8
Lalb_Chr08g0241141 Lupinus albus HOM05D001090 ORTHO05D002687 3.4e-06 55.5 71 33.8
SGA_v2.0_scaffold28G11973 Striga asiatica HOM05D001090 ORTHO05D002687 3.4e-06 55.5 68 36.8
CiPaw.15G032300 Carya illinoinensis HOM05D001090 ORTHO05D002687 4.4e-06 55.1 71 32.4
PSO764G0256 Papaver somniferum HOM05D001090 ORTHO05D002687 4.4e-06 55.1 71 32.4
PSO832G0312 Papaver somniferum HOM05D001090 ORTHO05D002687 4.4e-06 55.1 71 32.4
Solyc11g005020.3 Solanum lycopersicum HOM05D001090 ORTHO05D002687 4.4e-06 55.1 71 33.8
PGSC0003DMG400006051 Solanum tuberosum HOM05D001090 ORTHO05D002687 4.4e-06 55.1 71 33.8
Glyma.06G116900 Glycine max HOM05D001090 ORTHO05D002687 5.7e-06 54.7 70 32.9
Lj7C349G17 Lonicera japonica HOM05D001090 ORTHO05D002687 5.7e-06 54.7 68 33.8
Os11g0195100 Oryza sativa ssp. japonica HOM05D001090 ORTHO05D002687 5.7e-06 54.7 67 35.8
Phvul.009G129400 Phaseolus vulgaris HOM05D001090 ORTHO05D002687 5.7e-06 54.7 70 32.9
PGR042G2877 Punica granatum HOM05D001090 ORTHO05D002687 5.7e-06 54.7 78 32.1
vmacro05516 Vaccinium macrocarpon HOM05D001090 ORTHO05D002687 5.7e-06 54.7 71 32.4
Zm00001eb090990 Zea mays HOM05D001090 ORTHO05D002687 5.7e-06 54.7 67 35.8
Cc10_g12680 Coffea canephora HOM05D001090 ORTHO05D002687 7.5e-06 54.3 71 32.4
Eucgr.F03833 Eucalyptus grandis HOM05D001090 ORTHO05D002687 7.5e-06 54.3 71 32.4
Gohir.D03G069000 Gossypium hirsutum HOM05D001090 ORTHO05D002687 7.5e-06 54.3 71 32.4
Nitab4.5_0002045g0110 Nicotiana tabacum HOM05D001090 ORTHO05D002687 7.5e-06 54.3 68 35.3
Thecc.08G132400 Theobroma cacao HOM05D001090 ORTHO05D002687 7.5e-06 54.3 71 32.4
TWI32G0149 Tripterygium wilfordii HOM05D001090 ORTHO05D002687 7.5e-06 54.3 71 32.4
GSVIVG01008813001 Vitis vinifera HOM05D001090 ORTHO05D002687 7.5e-06 54.3 71 32.4
Aqoxy6G00322 Aquilegia oxysepala HOM05D001090 ORTHO05D002687 9.8e-06 53.9 68 33.8
arahy.Tifrunner.gnm1.ann1.9Y6HC5 Arachis hypogaea HOM05D001090 ORTHO05D002687 9.8e-06 53.9 68 33.8
MBI03_g28478_MAGBIO Magnolia biondii HOM05D001090 ORTHO05D002687 9.8e-06 53.9 71 33.8
TPR.G13471 Trifolium pratense HOM05D001090 ORTHO05D002687 9.8e-06 53.9 65 36.9
TAR628G0124 Trochodendron aralioides HOM05D001090 ORTHO05D002687 9.8e-06 53.9 71 32.4


User provided reference genes

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