Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_04709 Sequoiadendron giganteum HOM05D002267 ORTHO05D005902 5.5e-300 1033.5 505 100.0
ATR0824G083 Amborella trichopoda HOM05D002267 ORTHO05D005902 3.6e-219 765.0 491 76.2
TAR629G0265 Trochodendron aralioides HOM05D002267 ORTHO05D005902 3.6e-219 765.0 492 76.0
DCAR_007527 Daucus carota HOM05D002267 ORTHO05D005902 2.2e-216 755.7 491 74.7
Cpa.g.sc652.3 Carica papaya HOM05D002267 ORTHO05D005902 3.7e-216 755.0 498 74.9
AUR62014559 Chenopodium quinoa HOM05D002267 ORTHO05D005902 3.7e-216 755.0 492 76.0
Hund16106 Selenicereus undatus HOM05D002267 ORTHO05D005902 4.9e-216 754.6 492 75.4
Actinidia36296 Actinidia chinensis HOM05D002267 ORTHO05D005902 8.4e-216 753.8 498 75.3
Sopen06g001330 Solanum pennellii HOM05D002267 ORTHO05D005902 1.4e-215 753.1 492 75.8
Dinv34871 Davidia involucrata HOM05D002267 ORTHO05D005902 1.9e-215 752.7 492 75.4
Nitab4.5_0011661g0010 Nicotiana tabacum HOM05D002267 ORTHO05D005902 2.4e-215 752.3 492 76.4
PGSC0003DMG400003469 Solanum tuberosum HOM05D002267 ORTHO05D005902 2.4e-215 752.3 492 76.4
Ciclev10011558m.g Citrus clementina HOM05D002267 ORTHO05D005902 4.1e-215 751.5 492 75.4
CsaV3_5G038940 Cucumis sativus L. HOM05D002267 ORTHO05D005902 4.1e-215 751.5 494 75.5
Duzib213G0616 Durio zibethinus HOM05D002267 ORTHO05D005902 9.2e-215 750.4 506 73.7
Aqoxy3G03816 Aquilegia oxysepala HOM05D002267 ORTHO05D005902 1.2e-214 750.0 492 75.2
ClCG11G005190 Citrullus lanatus HOM05D002267 ORTHO05D005902 1.2e-214 750.0 492 75.4
Solyc06g005370.3 Solanum lycopersicum HOM05D002267 ORTHO05D005902 1.2e-214 750.0 493 75.9
PSO541G0287 Papaver somniferum HOM05D002267 ORTHO05D005902 2.1e-214 749.2 498 74.3
AUR62008939 Chenopodium quinoa HOM05D002267 ORTHO05D005902 2.7e-214 748.8 493 75.3
CiPaw.04G004900 Carya illinoinensis HOM05D002267 ORTHO05D005902 3.5e-214 748.4 492 74.4
COL.COLO4_17522 Corchorus olitorius HOM05D002267 ORTHO05D005902 4.6e-214 748.0 494 74.5
Gorai.013G174300 Gossypium raimondii HOM05D002267 ORTHO05D005902 4.6e-214 748.0 498 74.5
vmacro05590 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 4.6e-214 748.0 493 75.7
Cfa007986 Carpinus fangiana HOM05D002267 ORTHO05D005902 6.0e-214 747.7 498 73.9
Lj2A1079T37 Lonicera japonica HOM05D002267 ORTHO05D005902 6.0e-214 747.7 492 74.6
Manes.02G064400 Manihot esculenta HOM05D002267 ORTHO05D005902 1.0e-213 746.9 498 73.9
A02p37120 Brassica napus HOM05D002267 ORTHO05D005902 1.3e-213 746.5 504 73.0
Gohir.A13G150000 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.3e-213 746.5 498 74.7
Thecc.07G119800 Theobroma cacao HOM05D002267 ORTHO05D005902 1.7e-213 746.1 501 74.3
Gohir.D13G154300 Gossypium hirsutum HOM05D002267 ORTHO05D005902 2.3e-213 745.7 498 74.3
Gorai.002G053200 Gossypium raimondii HOM05D002267 ORTHO05D005902 3.0e-213 745.3 498 74.1
Aa31LG2G3660 Aethionema arabicum HOM05D002267 ORTHO05D005902 3.9e-213 745.0 500 73.8
BcaB07g30054 Brassica carinata HOM05D002267 ORTHO05D005902 3.9e-213 745.0 492 74.8
Haze_14088 Corylus avellana HOM05D002267 ORTHO05D005902 5.1e-213 744.6 501 73.7
HanXRQChr17g0559871 Helianthus annuus HOM05D002267 ORTHO05D005902 5.1e-213 744.6 492 74.2
Sed0022523 Sechium edule HOM05D002267 ORTHO05D005902 5.1e-213 744.6 495 74.3
CARHR260400 Cardamine hirsuta HOM05D002267 ORTHO05D005902 6.6e-213 744.2 495 73.9
MBI14_g41042_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 6.6e-213 744.2 493 75.1
QL02p053833 Quercus lobata HOM05D002267 ORTHO05D005902 8.6e-213 743.8 498 73.3
AL5G20480 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 1.1e-212 743.4 497 73.6
Gohir.D01G042400 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.5e-212 743.0 498 73.9
BcaC06g33731 Brassica carinata HOM05D002267 ORTHO05D005902 1.9e-212 742.7 501 73.5
Peaxi162Scf00465g00103 Petunia axillaris HOM05D002267 ORTHO05D005902 1.9e-212 742.7 503 74.0
Carub.0006s2794 Capsella rubella HOM05D002267 ORTHO05D005902 2.5e-212 742.3 495 74.7
MELO3C022075.2 Cucumis melo HOM05D002267 ORTHO05D005902 2.5e-212 742.3 483 75.6
Potri.017G109500 Populus trichocarpa HOM05D002267 ORTHO05D005902 2.5e-212 742.3 492 74.4
Atru.chr1.1114 Acer truncatum HOM05D002267 ORTHO05D005902 3.3e-212 741.9 493 75.1
AT3G30841 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 3.3e-212 741.9 495 73.7
BolC7t44387H Brassica oleracea HOM05D002267 ORTHO05D005902 3.3e-212 741.9 501 73.5
A06p39620 Brassica napus HOM05D002267 ORTHO05D005902 4.3e-212 741.5 495 73.9
BolC2t11669H Brassica oleracea HOM05D002267 ORTHO05D005902 4.3e-212 741.5 503 73.2
BraA06t26877Z Brassica rapa HOM05D002267 ORTHO05D005902 4.3e-212 741.5 495 73.9
EL10Ac2g04655 Beta vulgaris HOM05D002267 ORTHO05D005902 5.6e-212 741.1 492 74.4
MD17G1071600 Malus domestica HOM05D002267 ORTHO05D005902 5.6e-212 741.1 498 74.7
C07p38670 Brassica napus HOM05D002267 ORTHO05D005902 7.3e-212 740.7 501 73.5
CAN.G185.18 Capsicum annuum HOM05D002267 ORTHO05D005902 7.3e-212 740.7 494 74.7
BraA02t08698Z Brassica rapa HOM05D002267 ORTHO05D005902 2.1e-211 739.2 512 71.9
Thhalv10004074m.g Eutrema salsugineum HOM05D002267 ORTHO05D005902 2.1e-211 739.2 492 74.4
Eucgr.J01450 Eucalyptus grandis HOM05D002267 ORTHO05D005902 2.8e-211 738.8 492 73.8
Gohir.A01G052800 Gossypium hirsutum HOM05D002267 ORTHO05D005902 2.8e-211 738.8 498 73.5
Mapoly0028s0072 Marchantia polymorpha HOM05D002267 ORTHO05D005902 2.8e-211 738.8 496 74.6
FvH4_6g45710 Fragaria vesca HOM05D002267 ORTHO05D005902 3.6e-211 738.4 498 74.5
Lsat_1_v5_gn_2_86320 Lactuca sativa HOM05D002267 ORTHO05D005902 3.6e-211 738.4 495 73.5
PSO675G5323 Papaver somniferum HOM05D002267 ORTHO05D005902 4.7e-211 738.0 498 73.1
Potri.004G106200 Populus trichocarpa HOM05D002267 ORTHO05D005902 8.1e-211 737.3 492 74.2
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 1.1e-210 736.9 478 75.5
SMO239G0110 Selaginella moellendorffii HOM05D002267 ORTHO05D005902 2.4e-210 735.7 493 73.8
Hund16105 Selenicereus undatus HOM05D002267 ORTHO05D005902 2.4e-210 735.7 530 70.4
CANSAT64G2636 Cannabis sativa HOM05D002267 ORTHO05D005902 6.8e-210 734.2 492 73.6
MSTRG.15422 Avicennia marina HOM05D002267 ORTHO05D005902 8.9e-210 733.8 493 73.0
FAN14G5533 Fragaria x ananassa HOM05D002267 ORTHO05D005902 8.9e-210 733.8 498 74.1
FAN09G4431 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.5e-209 733.0 498 73.7
Lalb_Chr04g0258191 Lupinus albus HOM05D002267 ORTHO05D005902 2.6e-209 732.3 492 74.4
Nitab4.5_0002077g0130 Nicotiana tabacum HOM05D002267 ORTHO05D005902 3.4e-209 731.9 509 73.1
AT4G09520 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 5.8e-209 731.1 492 73.6
Sc14g0003340 Simmondsia chinensis HOM05D002267 ORTHO05D005902 5.8e-209 731.1 492 74.0
TWI34G0765 Tripterygium wilfordii HOM05D002267 ORTHO05D005902 5.8e-209 731.1 498 72.3
AL6G43080 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 7.6e-209 730.7 492 73.0
C02p56120 Brassica napus HOM05D002267 ORTHO05D005902 7.6e-209 730.7 494 73.3
PGR042G2823 Punica granatum HOM05D002267 ORTHO05D005902 7.6e-209 730.7 498 72.1
Medtr7g019260 Medicago truncatula HOM05D002267 ORTHO05D005902 9.9e-209 730.3 492 74.4
Cc03_g12570 Coffea canephora HOM05D002267 ORTHO05D005902 1.3e-208 729.9 492 74.0
VMungo1383G0144 Vigna mungo HOM05D002267 ORTHO05D005902 1.7e-208 729.6 492 73.6
arahy.Tifrunner.gnm1.ann1.D1YG1E Arachis hypogaea HOM05D002267 ORTHO05D005902 2.2e-208 729.2 492 74.0
Glyma.18G279400 Glycine max HOM05D002267 ORTHO05D005902 2.2e-208 729.2 492 73.6
arahy.Tifrunner.gnm1.ann1.Y9SFAF Arachis hypogaea HOM05D002267 ORTHO05D005902 4.9e-208 728.0 493 73.8
FAN23G1730 Fragaria x ananassa HOM05D002267 ORTHO05D005902 6.4e-208 727.6 498 74.1
FAN26G1557 Fragaria x ananassa HOM05D002267 ORTHO05D005902 6.4e-208 727.6 498 73.7
RcHm_v2.0_Chr2g0163861 Rosa chinensis HOM05D002267 ORTHO05D005902 6.4e-208 727.6 498 73.3
Lj1g0004668 Lotus japonicus HOM05D002267 ORTHO05D005902 8.4e-208 727.2 492 73.8
Oeu049334.1 Olea europaea HOM05D002267 ORTHO05D005902 1.1e-207 726.9 492 73.2
Phvul.008G021600 Phaseolus vulgaris HOM05D002267 ORTHO05D005902 1.1e-207 726.9 492 73.6
Psat3g192200 Pisum sativum HOM05D002267 ORTHO05D005902 1.4e-207 726.5 493 73.8
Lalb_Chr17g0336641 Lupinus albus HOM05D002267 ORTHO05D005902 3.2e-207 725.3 492 73.6
Ca_06721_v3 Cicer arietinum L. HOM05D002267 ORTHO05D005902 4.2e-207 724.9 492 74.2
CDE04G2341 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 5.4e-207 724.5 493 72.4
Sabra04G0076200 Salix brachista HOM05D002267 ORTHO05D005902 1.6e-206 723.0 526 69.6
SalBow1G1113 Salvia bowleyana HOM05D002267 ORTHO05D005902 2.1e-206 722.6 492 72.8
CDE02G3890 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 7.8e-206 720.7 491 72.1
HPP92_013287 Vanilla planifolia HOM05D002267 ORTHO05D005902 1.3e-205 719.9 491 72.9
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 3.9e-205 718.4 481 73.2
THA.LOC104805546 Tarenaya hassleriana HOM05D002267 ORTHO05D005902 3.9e-205 718.4 495 72.3
Migut.K00870 Erythranthe guttata HOM05D002267 ORTHO05D005902 2.5e-204 715.7 494 72.9
SGA_v2.0_scaffold62G21549 Striga asiatica HOM05D002267 ORTHO05D005902 4.3e-204 714.9 494 72.1
Pp3c1_4540 Physcomitrium patens HOM05D002267 ORTHO05D005902 2.0e-201 706.1 492 70.7
Zm00001eb137710 Zea mays HOM05D002267 ORTHO05D005902 5.8e-201 704.5 519 69.4
BcaB07g30055 Brassica carinata HOM05D002267 ORTHO05D005902 2.9e-200 702.2 445 77.1
HanXRQChr07g0200151 Helianthus annuus HOM05D002267 ORTHO05D005902 3.1e-194 682.2 447 74.5
Os12g0536000 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D005902 9.9e-193 677.2 446 75.6
Sp2g18250 Schrenkiella parvula HOM05D002267 ORTHO05D005902 9.9e-193 677.2 447 75.2
GSVIVG01008609001 Vitis vinifera HOM05D002267 ORTHO05D005902 3.9e-189 665.2 447 75.2
FvH4_5g30870 Fragaria vesca HOM05D002267 ORTHO05D005902 5.1e-189 664.8 447 74.9
Dinv33904 Davidia involucrata HOM05D002267 ORTHO05D005902 2.5e-188 662.5 441 74.6
TPR.G3251 Trifolium pratense HOM05D002267 ORTHO05D005902 3.8e-176 622.1 385 78.7
MBI14_g39140_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.3e-173 613.6 496 65.9
CBR_g48938 Chara braunii HOM05D002267 ORTHO05D005902 1.5e-172 610.1 509 61.5
unitig_748.g7015 Utricularia gibba HOM05D002267 ORTHO05D005902 5.7e-172 608.2 411 73.0
MBI14_g13654_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 5.3e-170 601.7 478 66.3
CSS0025473 Camellia sinensis var. sinensis HOM05D002267 ORTHO05D005902 5.0e-160 568.5 389 72.8
Nn4g23627 Nelumbo nucifera HOM05D002267 ORTHO05D005902 3.0e-157 559.3 498 59.6
RcHm_v2.0_Chr5g0053071 Rosa chinensis HOM05D002267 ORTHO05D005902 1.9e-151 540.0 390 71.0
FAN05G0821 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.2e-151 539.3 391 70.6
Cre12.g527400 Chlamydomonas reinhardtii HOM05D002267 ORTHO05D005902 1.6e-145 520.4 538 50.4
Psat0s4662g0040 Pisum sativum HOM05D002267 ORTHO05D005902 1.0e-144 517.7 497 57.1
vmacro23424 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 2.2e-144 516.5 469 61.4
Sabra17G0091700 Salix brachista HOM05D002267 ORTHO05D008106 8.3e-139 498.0 399 64.2
Prupe.3G243300 Prunus persica HOM05D002267 ORTHO05D005902 8.5e-136 488.0 351 70.4
FAN18G0049 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.8e-128 462.6 270 84.4
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 1.4e-117 427.6 452 50.4
Zm00001eb410550 Zea mays HOM05D002267 ORTHO05D005902 1.8e-109 400.6 242 79.8
HanXRQChr03g0070911 Helianthus annuus HOM05D002267 ORTHO05D005902 8.9e-109 398.3 241 79.7
AagrBONN_evm.TU.Sc2ySwM_362.1960 Anthoceros agrestis HOM05D002267 ORTHO05D005902 2.2e-107 393.7 438 52.1
AagrBONN_evm.TU.Sc2ySwM_228.1779 Anthoceros agrestis HOM05D002267 ORTHO05D005902 2.4e-106 390.2 254 76.0
HanXRQChr03g0070931 Helianthus annuus HOM05D002267 ORTHO05D005902 1.9e-98 364.0 304 62.2
FAN13G3322 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.3e-95 353.2 229 76.0
MBI14_g42567_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 2.1e-94 350.5 481 45.1
BcaC03g17613 Brassica carinata HOM05D002267 ORTHO05D005902 6.4e-91 339.0 254 64.6
MD09G1080600 Malus domestica HOM05D002267 ORTHO05D005902 2.1e-89 334.0 305 61.6
HPP92_013297 Vanilla planifolia HOM05D002267 ORTHO05D005902 7.1e-82 308.9 239 65.7
SHI33593 Sapria himalayana HOM05D002267 ORTHO05D005902 1.5e-76 291.2 242 61.2
FAN02G0256 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.9e-71 274.2 313 50.8
Duzib177G0042 Durio zibethinus HOM05D002267 ORTHO05D005902 1.4e-69 268.1 250 60.0
TAR374G1196 Trochodendron aralioides HOM05D002267 ORTHO05D005902 1.2e-52 211.8 262 48.5
TPR.G11470 Trifolium pratense HOM05D002267 ORTHO05D005902 1.3e-46 191.8 161 62.7
Oeu025125.1 Olea europaea HOM05D002267 ORTHO05D005902 3.6e-41 173.7 150 57.3
BcaC06g30839 Brassica carinata HOM05D002267 ORTHO05D005902 6.1e-41 172.9 304 40.8
HPP92_013296 Vanilla planifolia HOM05D002267 ORTHO05D005902 1.8e-40 171.4 154 61.7
BcaB07g30056 Brassica carinata HOM05D002267 ORTHO05D027489 1.5e-39 168.3 96 82.3
HanXRQChr17g0560661 Helianthus annuus HOM05D002267 ORTHO05D027489 1.7e-38 164.9 96 79.2
MBI14_g30826_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D027489 4.8e-38 163.3 105 75.2
CARHR060050 Cardamine hirsuta HOM05D002267 ORTHO05D005902 1.6e-36 158.3 146 54.8
MD09G1080700 Malus domestica HOM05D002267 ORTHO05D005902 4.0e-32 143.7 101 69.3
GSVIVG01036480001 Vitis vinifera HOM05D002267 ORTHO05D005902 1.1e-29 135.6 75 85.3
Sed0003994 Sechium edule HOM05D002267 ORTHO05D007330 2.0e-28 131.3 123 53.7
Duzib168G0178 Durio zibethinus HOM05D002267 ORTHO05D029252 1.9e-26 124.8 82 73.2
Glyma.20G047400 Glycine max HOM05D002267 ORTHO05D029252 6.1e-25 119.8 88 68.2
MBI14_g13653_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D035901 1.5e-23 115.2 161 42.9
Glyma.04G110800 Glycine max HOM05D002267 ORTHO05D029252 1.2e-17 95.5 96 53.1
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 3.5e-12 77.4 61 67.2
Glyma.U031218 Glycine max HOM05D002267 ORTHO05D029252 2.5e-10 71.2 36 86.1
BcaB04g17555 Brassica carinata HOM05D002267 ORTHO05D092878 3.6e-09 67.4 51 66.7
Nn5g27547 Nelumbo nucifera HOM05D002267 ORTHO05D027489 2.0e-07 61.6 30 86.7
FAN18G1196 Fragaria x ananassa HOM05D002267 ORTHO05D035901 2.2e-06 58.2 76 47.4


User provided reference genes

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