Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_04644 Sequoiadendron giganteum HOM05D003674 ORTHO05D004226 4.0e-113 411.4 197 100.0
SEGI_41053 Sequoiadendron giganteum HOM05D002761 ORTHO05D003351 2.5e-38 162.9 196 50.0
HPP92_008135 Vanilla planifolia HOM05D003674 ORTHO05D004226 1.3e-18 97.4 71 63.4
Zm00001eb360320 Zea mays HOM05D003674 ORTHO05D004226 5.9e-16 88.6 71 50.7
Aa31LG5G2940 Aethionema arabicum HOM05D003674 ORTHO05D004226 1.3e-15 87.4 71 62.0
BcaB01g02542 Brassica carinata HOM05D003674 ORTHO05D004226 1.3e-15 87.4 71 59.2
Cpa.g.sc848.1 Carica papaya HOM05D003674 ORTHO05D004226 2.2e-15 86.7 71 60.6
Os01g0678500 Oryza sativa ssp. japonica HOM05D003674 ORTHO05D004226 2.9e-15 86.3 71 53.5
THA.LOC104826033 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 2.9e-15 86.3 71 59.2
Cfa014617 Carpinus fangiana HOM05D003674 ORTHO05D004226 3.8e-15 85.9 71 54.9
vmacro12305 Vaccinium macrocarpon HOM05D003674 ORTHO05D004226 3.8e-15 85.9 71 53.5
Thhalv10029480m.g Eutrema salsugineum HOM05D003674 ORTHO05D004226 5.0e-15 85.5 71 56.3
Rhsim06G0142000 Rhododendron simsii HOM05D003674 ORTHO05D004226 5.0e-15 85.5 71 54.9
TAR624G0345 Trochodendron aralioides HOM05D003674 ORTHO05D004226 5.0e-15 85.5 71 60.6
BcaB01g01906 Brassica carinata HOM05D003674 ORTHO05D004226 6.5e-15 85.1 71 57.7
Haze_13165 Corylus avellana HOM05D003674 ORTHO05D004226 6.5e-15 85.1 71 56.3
BcaC01g06668 Brassica carinata HOM05D003674 ORTHO05D004226 8.5e-15 84.7 71 59.2
BcaC04g23961 Brassica carinata HOM05D003674 ORTHO05D004226 8.5e-15 84.7 71 57.7
A03p30360 Brassica napus HOM05D003674 ORTHO05D004226 8.5e-15 84.7 71 59.2
C03p36660 Brassica napus HOM05D003674 ORTHO05D004226 8.5e-15 84.7 71 59.2
BolC3t15980H Brassica oleracea HOM05D003674 ORTHO05D004226 8.5e-15 84.7 71 59.2
BolC9t53217H Brassica oleracea HOM05D003674 ORTHO05D004226 8.5e-15 84.7 71 57.7
BraA03t12218Z Brassica rapa HOM05D003674 ORTHO05D004226 8.5e-15 84.7 71 59.2
CARHR251990 Cardamine hirsuta HOM05D003674 ORTHO05D004226 8.5e-15 84.7 71 57.7
Eucgr.K01031 Eucalyptus grandis HOM05D003674 ORTHO05D004226 8.5e-15 84.7 71 57.7
AL6G49310 Arabidopsis lyrata HOM05D003674 ORTHO05D004226 1.1e-14 84.3 71 57.7
A09p02830 Brassica napus HOM05D000230 ORTHO05D000176 1.1e-14 84.3 71 57.7
BraA09t35927Z Brassica rapa HOM05D003674 ORTHO05D004226 1.1e-14 84.3 71 57.7
Sp6g03570 Schrenkiella parvula HOM05D003674 ORTHO05D004226 1.1e-14 84.3 71 56.3
THA.LOC104801172 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 1.1e-14 84.3 71 59.2
AT4G03560 Arabidopsis thaliana HOM05D003674 ORTHO05D004226 1.9e-14 83.6 71 54.9
CAN.G248.4 Capsicum annuum HOM05D003674 ORTHO05D004226 2.5e-14 83.2 71 59.2
Eucgr.K01029 Eucalyptus grandis HOM05D003674 ORTHO05D004226 2.5e-14 83.2 71 57.7
TAR624G0173 Trochodendron aralioides HOM05D003674 ORTHO05D004226 2.5e-14 83.2 72 58.3
Sed0011332 Sechium edule HOM05D003674 ORTHO05D004226 3.2e-14 82.8 71 57.7
CSS0035927 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 5.5e-14 82.0 71 52.1
MD17G1240200 Malus domestica HOM05D003674 ORTHO05D004226 5.5e-14 82.0 71 56.3
Carub.0006s3351 Capsella rubella HOM05D003674 ORTHO05D004226 7.2e-14 81.6 71 54.9
FAN09G3196 Fragaria x ananassa HOM05D000230 ORTHO05D004226 7.2e-14 81.6 71 53.5
CiPaw.04G126100 Carya illinoinensis HOM05D003674 ORTHO05D004226 9.4e-14 81.3 71 54.9
Ciclev10014388m.g Citrus clementina HOM05D003674 ORTHO05D004226 9.4e-14 81.3 71 54.9
Eucgr.K01030 Eucalyptus grandis HOM05D003674 ORTHO05D004226 9.4e-14 81.3 71 57.7
FvH4_6g26210 Fragaria vesca HOM05D003674 ORTHO05D004226 9.4e-14 81.3 71 53.5
TWI75G1008 Tripterygium wilfordii HOM05D003674 ORTHO05D004226 9.4e-14 81.3 71 57.7
FAN05G0320 Fragaria x ananassa HOM05D000230 ORTHO05D000176 1.2e-13 80.9 71 53.5
Sc12g0003090 Simmondsia chinensis HOM05D003674 ORTHO05D004226 1.2e-13 80.9 71 57.7
Actinidia11032 Actinidia chinensis HOM05D003674 ORTHO05D004226 1.6e-13 80.5 71 53.5
Cc05_g07170 Coffea canephora HOM05D003674 ORTHO05D004226 1.6e-13 80.5 71 57.7
FAN02G2237 Fragaria x ananassa HOM05D003674 ORTHO05D004226 1.6e-13 80.5 70 54.3
Lj3g0012901 Lotus japonicus HOM05D003674 ORTHO05D004226 1.6e-13 80.5 72 58.3
TPR.G6424 Trifolium pratense HOM05D003674 ORTHO05D004226 1.6e-13 80.5 72 58.3
GSVIVG01020549001 Vitis vinifera HOM05D003674 ORTHO05D004226 1.6e-13 80.5 71 57.7
Nitab4.5_0004344g0030 Nicotiana tabacum HOM05D003674 ORTHO05D004226 2.7e-13 79.7 71 56.3
Glyma.12G204400 Glycine max HOM05D003674 ORTHO05D004226 3.6e-13 79.3 72 56.9
Aqoxy4G00814 Aquilegia oxysepala HOM05D003674 ORTHO05D004226 4.7e-13 79.0 71 53.5
ClCG07G002890 Citrullus lanatus HOM05D003674 ORTHO05D004226 4.7e-13 79.0 71 53.5
CsaV3_7G004450 Cucumis sativus L. HOM05D003674 ORTHO05D004226 4.7e-13 79.0 71 56.3
PSO210G7128 Papaver somniferum HOM05D003674 ORTHO05D004226 4.7e-13 79.0 71 54.9
Glyma.13G296900 Glycine max HOM05D003674 ORTHO05D004226 6.1e-13 78.6 72 55.6
MD09G1247300 Malus domestica HOM05D003674 ORTHO05D004226 6.1e-13 78.6 71 54.9
Nitab4.5_0000512g0020 Nicotiana tabacum HOM05D003674 ORTHO05D004226 6.1e-13 78.6 71 56.3
PSO832G0572 Papaver somniferum HOM05D003674 ORTHO05D004226 6.1e-13 78.6 71 54.9
RcHm_v2.0_Chr2g0126551 Rosa chinensis HOM05D003674 ORTHO05D004226 6.1e-13 78.6 71 53.5
SHI10401 Sapria himalayana HOM05D003674 ORTHO05D004226 6.1e-13 78.6 71 57.7
MELO3C018734.2 Cucumis melo HOM05D003674 ORTHO05D004226 8.0e-13 78.2 71 54.9
Mapoly0002s0274 Marchantia polymorpha HOM05D003674 ORTHO05D004226 8.0e-13 78.2 71 53.5
PGR142G3148 Punica granatum HOM05D003674 ORTHO05D004226 8.0e-13 78.2 71 57.7
DCAR_021245 Daucus carota HOM05D003674 ORTHO05D004226 1.4e-12 77.4 71 54.9
Dinv23635 Davidia involucrata HOM05D003674 ORTHO05D004226 1.4e-12 77.4 71 54.9
Solyc07g053970.3 Solanum lycopersicum HOM05D003674 ORTHO05D004226 1.4e-12 77.4 71 56.3
Medtr2g090380 Medicago truncatula HOM05D003674 ORTHO05D004226 1.8e-12 77.0 72 56.9
Pp3c15_12230 Physcomitrium patens HOM05D003674 ORTHO05D004226 2.3e-12 76.6 71 52.1
Psat5g272320 Pisum sativum HOM05D003674 ORTHO05D004226 2.3e-12 76.6 72 54.2
Actinidia11076 Actinidia chinensis HOM05D003674 ORTHO05D004226 3.0e-12 76.3 71 50.7
Pp3c1_6270 Physcomitrium patens HOM05D003674 ORTHO05D004226 3.0e-12 76.3 71 53.5
Pp3c1_6272 Physcomitrium patens HOM05D003674 ORTHO05D004226 3.0e-12 76.3 71 53.5
RcHm_v2.0_Chr2g0126531 Rosa chinensis HOM05D003674 ORTHO05D004226 3.0e-12 76.3 72 50.0
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 3.0e-12 76.3 71 56.3
Nn1g06550 Nelumbo nucifera HOM05D003674 ORTHO05D004226 3.9e-12 75.9 71 52.1
CSS0020583 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 5.2e-12 75.5 71 50.7
Oeu058850.1 Olea europaea HOM05D003674 ORTHO05D004226 5.2e-12 75.5 71 52.1
Peaxi162Scf00132g00119 Petunia axillaris HOM05D003674 ORTHO05D004226 5.2e-12 75.5 71 54.9
QL08p038841 Quercus lobata HOM05D003674 ORTHO05D004226 5.2e-12 75.5 71 53.5
Ca_01498_v3 Cicer arietinum L. HOM05D003674 ORTHO05D004226 6.7e-12 75.1 72 54.2
Manes.13G146400 Manihot esculenta HOM05D003674 ORTHO05D004226 6.7e-12 75.1 71 54.9
CSS0005418 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 8.8e-12 74.7 71 50.7
CiPaw.03G177300 Carya illinoinensis HOM05D003674 ORTHO05D004226 8.8e-12 74.7 71 53.5
MBI06_g04180_MAGBIO Magnolia biondii HOM05D003674 ORTHO05D004226 8.8e-12 74.7 71 54.9
QL08p038784 Quercus lobata HOM05D003674 ORTHO05D004226 8.8e-12 74.7 71 52.1
SEGI_04435 Sequoiadendron giganteum HOM05D009513 ORTHO05D000002 8.8e-12 74.7 99 48.5
EL10Ac9g20767 Beta vulgaris HOM05D003674 ORTHO05D004226 1.1e-11 74.3 71 52.1
VMungo0464G1662 Vigna mungo HOM05D003674 ORTHO05D004226 1.1e-11 74.3 72 54.2
Potri.013G131100 Populus trichocarpa HOM05D003674 ORTHO05D004226 1.5e-11 73.9 71 54.9
Sabra13G0110700 Salix brachista HOM05D003674 ORTHO05D004226 1.5e-11 73.9 71 54.9
arahy.Tifrunner.gnm1.ann1.1DM7TY Arachis hypogaea HOM05D003674 ORTHO05D004226 2.0e-11 73.6 72 52.8
arahy.Tifrunner.gnm1.ann1.1TZ75T Arachis hypogaea HOM05D003674 ORTHO05D004226 2.0e-11 73.6 72 52.8
AUR62037356 Chenopodium quinoa HOM05D003674 ORTHO05D004226 2.6e-11 73.2 71 49.3
Phvul.004G108300 Phaseolus vulgaris HOM05D003674 ORTHO05D004226 2.6e-11 73.2 72 52.8
Sabra13G0110800 Salix brachista HOM05D003674 ORTHO05D004226 2.6e-11 73.2 71 53.5
AUR62042592 Chenopodium quinoa HOM05D003674 ORTHO05D004226 3.3e-11 72.8 71 49.3
Hund01095 Selenicereus undatus HOM05D003674 ORTHO05D004226 3.3e-11 72.8 70 52.9
Lalb_Chr22g0356561 Lupinus albus HOM05D003674 ORTHO05D004226 7.4e-11 71.6 72 51.4
SEGI_39819 Sequoiadendron giganteum HOM05D009513 ORTHO05D000002 7.4e-11 71.6 38 86.8
AagrBONN_evm.TU.Sc2ySwM_344.5080 Anthoceros agrestis HOM05D003674 ORTHO05D004226 1.3e-10 70.9 70 51.4
COL.COLO4_30194 Corchorus olitorius HOM05D003674 ORTHO05D004226 1.3e-10 70.9 71 53.5
Gohir.A03G156500 Gossypium hirsutum HOM05D003674 ORTHO05D004226 1.7e-10 70.5 71 54.9
Gorai.005G201400 Gossypium raimondii HOM05D003674 ORTHO05D004226 1.7e-10 70.5 71 54.9
Thecc.02G180000 Theobroma cacao HOM05D003674 ORTHO05D004226 2.2e-10 70.1 71 53.5
Oeu017490.2 Olea europaea HOM05D003674 ORTHO05D004226 2.8e-10 69.7 71 54.9
PSO675G3793 Papaver somniferum HOM05D003674 ORTHO05D004226 3.7e-10 69.3 71 50.7
Peaxi162Scf00132g00117 Petunia axillaris HOM05D003674 ORTHO05D004226 3.7e-10 69.3 85 44.7
MSTRG.14342 Avicennia marina HOM05D003674 ORTHO05D004226 4.8e-10 68.9 72 51.4
DCAR_019181 Daucus carota HOM05D003674 ORTHO05D004226 4.8e-10 68.9 71 49.3
QL08p038913 Quercus lobata HOM05D003674 ORTHO05D004226 4.8e-10 68.9 71 50.7
CAN.G1472.4 Capsicum annuum HOM05D003674 ORTHO05D004226 6.3e-10 68.6 70 50.0
Oeu010988.1 Olea europaea HOM05D003674 ORTHO05D004226 6.3e-10 68.6 70 54.3
unitig_749.g13960 Utricularia gibba HOM05D003674 ORTHO05D004226 6.3e-10 68.6 73 49.3
ECA234G3736 Erigeron canadensis HOM05D003674 ORTHO05D004226 8.2e-10 68.2 71 49.3
Duzib132G0159 Durio zibethinus HOM05D003674 ORTHO05D004226 1.1e-09 67.8 71 50.7
SGA_v2.0_scaffold322G48614 Striga asiatica HOM05D003674 ORTHO05D004226 1.4e-09 67.4 72 47.2
HanXRQChr10g0297111 Helianthus annuus HOM05D003674 ORTHO05D004226 2.4e-09 66.6 71 47.9
SEGI_21548 Sequoiadendron giganteum HOM05D001007 ORTHO05D006705 2.4e-09 66.6 42 71.4
SEGI_22096 Sequoiadendron giganteum HOM05D009513 ORTHO05D000002 2.4e-09 66.6 33 90.9
SEGI_39986 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 2.4e-09 66.6 32 93.8
Oeu017491.1 Olea europaea HOM05D003674 ORTHO05D004226 3.1e-09 66.2 70 52.9
Ah.01g004260 Amaranthus hybridus HOM05D003674 ORTHO05D004226 1.2e-08 64.3 60 50.0
Lsat_1_v5_gn_4_66721 Lactuca sativa HOM05D003674 ORTHO05D004226 1.6e-08 63.9 71 45.1
DCAR_013010 Daucus carota HOM05D003674 ORTHO05D004226 2.6e-08 63.2 71 45.1
Migut.H01178 Erythranthe guttata HOM05D003674 ORTHO05D004226 2.6e-08 63.2 72 44.4
SEGI_04133 Sequoiadendron giganteum HOM05D009513 ORTHO05D000002 2.6e-08 63.2 33 84.8
MSTRG.14335 Avicennia marina HOM05D003674 ORTHO05D004226 7.7e-08 61.6 75 41.3
SalBow1G0286 Salvia bowleyana HOM05D003674 ORTHO05D004226 1.3e-07 60.8 73 43.8
SEGI_39099 Sequoiadendron giganteum HOM05D009513 ORTHO05D000002 1.7e-07 60.5 81 44.4
SalBow1G3138 Salvia bowleyana HOM05D003674 ORTHO05D004226 2.2e-07 60.1 73 43.8
Nitab4.5_0012835g0020 Nicotiana tabacum HOM05D003674 ORTHO05D004226 2.9e-07 59.7 93 36.6
HanXRQChr06g0179591 Helianthus annuus HOM05D003674 ORTHO05D004226 1.1e-06 57.8 71 45.1


User provided reference genes

Program Settings