Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_04392 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 1.4e-218 762.7 391 100.0
SEGI_09298 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 4.9e-131 471.9 253 94.5
QL08p052832 Quercus lobata HOM05D004324 ORTHO05D004840 1.5e-116 423.7 254 83.5
Eucgr.E01445 Eucalyptus grandis HOM05D004324 ORTHO05D004840 8.4e-115 417.9 253 83.0
FAN01G0081 Fragaria x ananassa HOM05D004324 ORTHO05D004840 1.1e-114 417.5 249 82.3
RcHm_v2.0_Chr1g0349771 Rosa chinensis HOM05D004324 ORTHO05D004840 1.1e-114 417.5 249 82.7
FAN03G2758 Fragaria x ananassa HOM05D004324 ORTHO05D004840 1.9e-114 416.8 249 82.3
FAN06G1729 Fragaria x ananassa HOM05D004324 ORTHO05D004840 1.9e-114 416.8 249 82.3
FAN06G4220 Fragaria x ananassa HOM05D004324 ORTHO05D004840 1.9e-114 416.8 249 82.3
CANSAT56G0022 Cannabis sativa HOM05D004324 ORTHO05D004840 7.1e-114 414.8 253 80.6
Cc02_g24110 Coffea canephora HOM05D004324 ORTHO05D004840 9.3e-114 414.5 249 82.3
CiPaw.01G263900 Carya illinoinensis HOM05D004324 ORTHO05D004840 1.2e-113 414.1 249 83.5
Migut.B01616 Erythranthe guttata HOM05D004324 ORTHO05D004840 1.2e-113 414.1 249 81.1
ATR0665G432 Amborella trichopoda HOM05D004324 ORTHO05D004840 2.1e-113 413.3 250 81.2
C03p34220 Brassica napus HOM05D004324 ORTHO05D004840 2.7e-113 412.9 249 81.9
BolC3t15731H Brassica oleracea HOM05D004324 ORTHO05D004840 2.7e-113 412.9 249 81.9
Dinv32365 Davidia involucrata HOM05D004324 ORTHO05D004840 2.7e-113 412.9 249 82.7
RcHm_v2.0_Chr1g0349751 Rosa chinensis HOM05D004324 ORTHO05D004840 2.7e-113 412.9 249 82.3
CSS0002473 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 3.5e-113 412.5 249 82.7
ECA234G2725 Erigeron canadensis HOM05D004324 ORTHO05D004840 3.5e-113 412.5 249 82.7
THA.LOC104826515 Tarenaya hassleriana HOM05D004324 ORTHO05D004840 4.6e-113 412.1 249 82.7
COL.COLO4_24610 Corchorus olitorius HOM05D004324 ORTHO05D004840 6.0e-113 411.8 249 82.3
Hma1.2p1_0442F.1_g153860 Hydrangea macrophylla HOM05D004324 ORTHO05D004840 7.9e-113 411.4 248 81.9
Manes.01G267300 Manihot esculenta HOM05D004324 ORTHO05D004840 7.9e-113 411.4 249 81.9
EL10Ac1g00868 Beta vulgaris HOM05D004324 ORTHO05D004840 1.0e-112 411.0 249 81.5
Os04g0106300 Oryza sativa ssp. japonica HOM05D004324 ORTHO05D004840 1.0e-112 411.0 249 81.9
PSO782G5694 Papaver somniferum HOM05D004324 ORTHO05D004840 1.0e-112 411.0 249 80.7
TAR375G0703 Trochodendron aralioides HOM05D004324 ORTHO05D004840 1.0e-112 411.0 249 81.9
HanXRQChr16g0519961 Helianthus annuus HOM05D004324 ORTHO05D004840 1.3e-112 410.6 249 82.7
MD07G1119200 Malus domestica HOM05D004324 ORTHO05D004840 1.3e-112 410.6 249 82.3
Manes.05G047100 Manihot esculenta HOM05D004324 ORTHO05D004840 1.3e-112 410.6 249 82.3
Sc26g0001240 Simmondsia chinensis HOM05D004324 ORTHO05D004840 1.3e-112 410.6 249 82.3
Actinidia12245 Actinidia chinensis HOM05D004324 ORTHO05D004840 1.8e-112 410.2 249 81.9
Nitab4.5_0000457g0100 Nicotiana tabacum HOM05D004324 ORTHO05D004840 1.8e-112 410.2 249 80.7
Peaxi162Scf00013g03018 Petunia axillaris HOM05D004324 ORTHO05D004840 1.8e-112 410.2 249 81.1
GSVIVG01027662001 Vitis vinifera HOM05D004324 ORTHO05D004840 1.8e-112 410.2 250 80.8
BcaC01g04748 Brassica carinata HOM05D004324 ORTHO05D004840 2.3e-112 409.8 249 81.5
PGR042G0702 Punica granatum HOM05D004324 ORTHO05D004840 2.3e-112 409.8 253 80.6
A03p28290 Brassica napus HOM05D004324 ORTHO05D004840 3.0e-112 409.5 249 81.1
CAN.G388.33 Capsicum annuum HOM05D004324 ORTHO05D004840 3.0e-112 409.5 249 80.7
Ciclev10021006m.g Citrus clementina HOM05D004324 ORTHO05D004840 3.0e-112 409.5 249 80.7
Lsat_1_v5_gn_4_43080 Lactuca sativa HOM05D004324 ORTHO05D004840 3.0e-112 409.5 249 81.5
Nn1g01122 Nelumbo nucifera HOM05D004324 ORTHO05D004840 3.0e-112 409.5 249 81.5
Solyc01g091160.4 Solanum lycopersicum HOM05D004324 ORTHO05D004840 3.9e-112 409.1 249 80.7
Sopen01g036910 Solanum pennellii HOM05D004324 ORTHO05D004840 3.9e-112 409.1 249 80.7
Thecc.08G173500 Theobroma cacao HOM05D004324 ORTHO05D004840 3.9e-112 409.1 249 81.5
BraA03t12035Z Brassica rapa HOM05D004324 ORTHO05D004840 5.1e-112 408.7 249 81.1
SGA_v2.0_scaffold153G36989 Striga asiatica HOM05D004324 ORTHO05D004840 5.1e-112 408.7 249 80.7
Lalb_Chr12g0208141 Lupinus albus HOM05D004324 ORTHO05D004840 6.7e-112 408.3 249 81.1
Potri.002G146200 Populus trichocarpa HOM05D004324 ORTHO05D004840 6.7e-112 408.3 249 81.5
Aa31LG9G14610 Aethionema arabicum HOM05D004324 ORTHO05D004840 8.7e-112 407.9 249 80.7
Potri.014G067700 Populus trichocarpa HOM05D004324 ORTHO05D004840 8.7e-112 407.9 249 81.1
MSTRG.17174 Avicennia marina HOM05D004324 ORTHO05D004840 1.1e-111 407.5 249 79.9
SalBow5G2819 Salvia bowleyana HOM05D004324 ORTHO05D004840 1.1e-111 407.5 249 80.3
TWI59G0845 Tripterygium wilfordii HOM05D004324 ORTHO05D004840 1.1e-111 407.5 249 79.5
AT4G08900 Arabidopsis thaliana HOM05D004324 ORTHO05D004840 1.9e-111 406.8 253 80.6
Duzib268G1605 Durio zibethinus HOM05D004324 ORTHO05D004840 1.9e-111 406.8 249 80.7
Aqoxy7G00682 Aquilegia oxysepala HOM05D004324 ORTHO05D004840 2.5e-111 406.4 249 80.3
BcaB01g02843 Brassica carinata HOM05D004324 ORTHO05D004840 2.5e-111 406.4 249 81.1
CARHR259850 Cardamine hirsuta HOM05D004324 ORTHO05D004840 2.5e-111 406.4 249 81.1
Cpa.g.sc145.18 Carica papaya HOM05D004324 ORTHO05D004840 2.5e-111 406.4 249 80.7
vmacro13417 Vaccinium macrocarpon HOM05D004324 ORTHO05D004840 2.5e-111 406.4 249 79.1
Thhalv10028793m.g Eutrema salsugineum HOM05D004324 ORTHO05D004840 3.3e-111 406.0 249 81.1
Sp6g08900 Schrenkiella parvula HOM05D004324 ORTHO05D004840 3.3e-111 406.0 253 79.1
AL6G41660 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 4.3e-111 405.6 253 80.2
Nitab4.5_0010616g0050 Nicotiana tabacum HOM05D004324 ORTHO05D004840 4.3e-111 405.6 249 79.9
PSO478G0881 Papaver somniferum HOM05D004324 ORTHO05D004840 4.3e-111 405.6 249 79.9
Gorai.009G265900 Gossypium raimondii HOM05D004324 ORTHO05D004840 5.6e-111 405.2 253 80.2
Carub.0006s2738 Capsella rubella HOM05D004324 ORTHO05D004840 7.4e-111 404.8 253 80.2
Haze_16793 Corylus avellana HOM05D004324 ORTHO05D004840 7.4e-111 404.8 248 80.2
MELO3C022492.2 Cucumis melo HOM05D004324 ORTHO05D004840 7.4e-111 404.8 250 80.8
CsaV3_6G006290 Cucumis sativus L. HOM05D004324 ORTHO05D004840 7.4e-111 404.8 249 81.5
Prupe.2G142300 Prunus persica HOM05D004324 ORTHO05D004840 7.4e-111 404.8 249 80.7
Gohir.D05G254400 Gossypium hirsutum HOM05D004324 ORTHO05D004840 1.3e-110 404.1 253 79.8
CDE04G0300 Ceratophyllum demersum HOM05D004324 ORTHO05D004840 1.6e-110 403.7 249 79.9
Mapoly0082s0038 Marchantia polymorpha HOM05D004324 ORTHO05D004840 2.1e-110 403.3 250 80.4
AUR62013655 Chenopodium quinoa HOM05D004324 ORTHO05D004840 2.8e-110 402.9 249 79.9
ClCG06G000480 Citrullus lanatus HOM05D004324 ORTHO05D004840 3.7e-110 402.5 249 80.3
SHI13535 Sapria himalayana HOM05D004324 ORTHO05D004840 4.8e-110 402.1 251 80.1
CSS0015452 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 8.1e-110 401.4 249 80.7
CSS0042374 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 8.1e-110 401.4 249 80.7
HPP92_007375 Vanilla planifolia HOM05D004324 ORTHO05D004840 8.1e-110 401.4 249 79.1
Sc26g0001250 Simmondsia chinensis HOM05D004324 ORTHO05D004840 1.1e-109 401.0 249 80.7
Atru.chr5.282 Acer truncatum HOM05D004324 ORTHO05D004840 1.8e-109 400.2 249 79.9
Psat0s3070g0160 Pisum sativum HOM05D004324 ORTHO05D004840 3.1e-109 399.4 249 78.7
Duzib177G0253 Durio zibethinus HOM05D004324 ORTHO05D004840 5.3e-109 398.7 249 79.5
SMO367G0287 Selaginella moellendorffii HOM05D004324 ORTHO05D004840 6.9e-109 398.3 250 78.0
Sed0016777 Sechium edule HOM05D004324 ORTHO05D004840 9.0e-109 397.9 249 80.3
AUR62004190 Chenopodium quinoa HOM05D004324 ORTHO05D004840 1.5e-108 397.1 249 79.1
Hund27368 Selenicereus undatus HOM05D004324 ORTHO05D004840 1.5e-108 397.1 239 80.8
Thecc.08G173700 Theobroma cacao HOM05D004324 ORTHO05D004840 2.6e-108 396.4 249 78.3
DCAR_008551 Daucus carota HOM05D004324 ORTHO05D004840 4.5e-108 395.6 239 81.2
Rhsim07G0029000 Rhododendron simsii HOM05D004324 ORTHO05D004840 4.5e-108 395.6 272 72.8
arahy.Tifrunner.gnm1.ann1.J6F3FE Arachis hypogaea HOM05D004324 ORTHO05D004840 5.8e-108 395.2 252 79.4
Lj3g0015076 Lotus japonicus HOM05D004324 ORTHO05D004840 5.8e-108 395.2 249 77.9
arahy.Tifrunner.gnm1.ann1.2VF8XD Arachis hypogaea HOM05D004324 ORTHO05D004840 1.7e-107 393.7 251 79.7
Phvul.010G081600 Phaseolus vulgaris HOM05D004324 ORTHO05D004840 2.2e-107 393.3 249 77.9
Solyc01g091170.3 Solanum lycopersicum HOM05D004324 ORTHO05D004840 2.2e-107 393.3 249 79.1
Sopen01g036920 Solanum pennellii HOM05D004324 ORTHO05D004840 2.2e-107 393.3 249 79.1
TPR.G7599 Trifolium pratense HOM05D004324 ORTHO05D004840 8.4e-107 391.3 249 77.5
unitig_899.g15094 Utricularia gibba HOM05D004324 ORTHO05D004840 8.4e-107 391.3 239 81.2
Ca_19938_v3 Cicer arietinum L. HOM05D004324 ORTHO05D004840 1.1e-106 391.0 249 77.5
Glyma.01G140200 Glycine max HOM05D004324 ORTHO05D004840 1.9e-106 390.2 249 77.5
Oeu055504.4 Olea europaea HOM05D004324 ORTHO05D004840 1.9e-106 390.2 286 70.6
AT4G08870 Arabidopsis thaliana HOM05D004324 ORTHO05D004840 2.5e-106 389.8 249 77.5
Glyma.17G131300 Glycine max HOM05D004324 ORTHO05D004840 4.2e-106 389.0 249 77.9
Carub.0006s2736 Capsella rubella HOM05D004324 ORTHO05D004840 4.6e-105 385.6 249 76.3
Pp3c5_2190 Physcomitrium patens HOM05D004324 ORTHO05D004840 1.3e-104 384.0 250 76.4
Glyma.03G028000 Glycine max HOM05D004324 ORTHO05D004840 2.3e-104 383.3 249 75.9
Lj3g0002034 Lotus japonicus HOM05D004324 ORTHO05D004840 5.1e-104 382.1 249 74.3
Lj3g0012371 Lotus japonicus HOM05D004324 ORTHO05D004840 4.3e-103 379.0 252 73.8
CiPaw.02G169300 Carya illinoinensis HOM05D004324 ORTHO05D004840 1.3e-102 377.5 239 77.0
CBR_g50887 Chara braunii HOM05D004324 ORTHO05D004840 4.8e-102 375.6 249 75.5
Lj3g0008609 Lotus japonicus HOM05D004324 ORTHO05D004840 8.2e-102 374.8 249 73.5
Hma1.2p1_0375F.1_g138670 Hydrangea macrophylla HOM05D004324 ORTHO05D004840 1.8e-101 373.6 256 74.2
Medtr4g024960 Medicago truncatula HOM05D004324 ORTHO05D004840 3.4e-100 369.4 249 72.7
TPR.G7597 Trifolium pratense HOM05D004324 ORTHO05D004840 6.5e-99 365.2 249 72.3
HanXRQChr16g0519941 Helianthus annuus HOM05D004324 ORTHO05D004840 7.9e-97 358.2 250 70.0
Zm00001eb418690 Zea mays HOM05D004324 ORTHO05D004840 5.1e-96 355.5 218 82.6
Ah.05g174550 Amaranthus hybridus HOM05D004324 ORTHO05D004840 8.7e-96 354.8 249 69.9
Lj7A531T56 Lonicera japonica HOM05D004324 ORTHO05D004840 5.0e-91 339.0 249 70.7
Psat7g231720 Pisum sativum HOM05D004324 ORTHO05D004840 9.4e-90 334.7 251 66.5
AL6G42680 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 2.0e-84 317.0 203 78.3
Psat6g218040 Pisum sativum HOM05D004324 ORTHO05D004840 1.4e-80 304.3 274 56.9
COL.COLO4_24608 Corchorus olitorius HOM05D004324 ORTHO05D004840 2.4e-77 293.5 249 62.7
SGA_v2.0_scaffold11G05569 Striga asiatica HOM05D004324 ORTHO05D004840 2.0e-76 290.4 252 61.5
Psat6g218080 Pisum sativum HOM05D004324 ORTHO05D004840 3.1e-69 266.5 205 63.9
arahy.Tifrunner.gnm1.ann1.J17N2W Arachis hypogaea HOM05D004324 ORTHO05D004840 1.6e-68 264.2 243 59.3
Sed0023731 Sechium edule HOM05D004324 ORTHO05D004840 4.7e-65 252.7 163 76.1
Dinv43690 Davidia involucrata HOM05D004324 ORTHO05D004840 4.0e-64 249.6 249 56.2
Atru.chr5.284 Acer truncatum HOM05D004324 ORTHO05D004840 6.8e-64 248.8 163 76.1
Medtr0088s0100 Medicago truncatula HOM05D004324 ORTHO05D004840 2.2e-59 233.8 252 53.6
Gohir.A05G252466 Gossypium hirsutum HOM05D004324 ORTHO05D004840 4.0e-56 223.0 145 77.9
FvH4_7g11450 Fragaria vesca HOM05D004324 ORTHO05D004840 9.8e-55 218.4 119 87.4
AagrBONN_evm.TU.Sc2ySwM_368.1743 Anthoceros agrestis HOM05D004324 ORTHO05D004840 8.3e-54 215.3 117 86.3
MBI04_g35670_MAGBIO Magnolia biondii HOM05D004324 ORTHO05D004840 5.4e-53 212.6 120 85.8
Medtr4g024940 Medicago truncatula HOM05D004324 ORTHO05D004840 8.6e-51 205.3 125 77.6
Psat6g217960 Pisum sativum HOM05D004324 ORTHO05D004840 3.4e-47 193.4 165 60.6
Sc26g0001270 Simmondsia chinensis HOM05D004324 ORTHO05D004840 5.6e-42 176.0 110 80.0
CDE02G4314 Ceratophyllum demersum HOM05D004324 ORTHO05D004840 2.3e-40 170.6 158 60.1
Gohir.A05G252532 Gossypium hirsutum HOM05D004324 ORTHO05D004840 7.5e-39 165.6 97 81.4
arahy.Tifrunner.gnm1.ann1.V33WN8 Arachis hypogaea HOM05D004324 ORTHO05D004840 3.2e-37 160.2 86 91.9
MD02G1206600 Malus domestica HOM05D004324 ORTHO05D004840 1.4e-32 144.8 82 84.1
Duzib177G0443 Durio zibethinus HOM05D004324 ORTHO05D004840 3.7e-30 136.7 84 82.1
CAN.G112.16 Capsicum annuum HOM05D004324 ORTHO05D004840 4.6e-28 129.8 86 73.3
CAN.G23.23 Capsicum annuum HOM05D004324 ORTHO05D004840 3.0e-27 127.1 78 76.9
Sc26g0001260 Simmondsia chinensis HOM05D004324 ORTHO05D004840 1.9e-18 97.8 137 47.4
Prupe.7G087800 Prunus persica HOM05D004324 ORTHO05D004840 4.0e-16 90.1 61 78.7
Cfa025533 Carpinus fangiana HOM05D000146 ORTHO05D004840 6.9e-16 89.4 269 28.6
MCO07G634 Micromonas commoda HOM05D004324 ORTHO05D004840 4.4e-15 86.7 253 27.3
Cfa023222 Carpinus fangiana HOM05D004324 ORTHO05D004840 5.4e-13 79.7 223 32.7
RcHm_v2.0_Chr1g0349761 Rosa chinensis HOM05D004324 ORTHO05D004840 5.4e-13 79.7 45 80.0
Pp3s30_709 Physcomitrium patens HOM05D004324 ORTHO05D004840 1.6e-12 78.2 240 27.1
Ca_28979_v3 Cicer arietinum L. HOM05D004324 ORTHO05D004840 3.5e-12 77.0 230 29.6
AL6G42730 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 1.3e-11 75.1 45 73.3
Prupe.2G076400 Prunus persica HOM05D004324 ORTHO05D004840 1.1e-08 65.5 52 67.3
SEGI_15947 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 4.0e-08 63.5 40 77.5
SEGI_09056 Sequoiadendron giganteum HOM05D000397 ORTHO05D000492 9.0e-08 62.4 34 79.4
Actinidia02866 Actinidia chinensis HOM05D004324 ORTHO05D004840 1.5e-07 61.6 98 41.8
SEGI_38304 Sequoiadendron giganteum HOM05D000363 ORTHO05D000236 5.8e-07 59.7 34 79.4
Aa31sc49G50 Aethionema arabicum HOM05D004324 ORTHO05D004840 9.9e-07 58.9 46 60.9
Cfa024978 Carpinus fangiana HOM05D004324 ORTHO05D034102 9.9e-07 58.9 202 27.2
SEGI_16677 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 9.9e-07 58.9 30 90.0


User provided reference genes

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