Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_04069 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 8.7e-40 166.4 77 100.0
Mapoly0090s0008 Marchantia polymorpha HOM05D003762 ORTHO05D004374 6.0e-25 117.1 77 64.9
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 6.3e-22 107.1 77 61.0
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 1.3e-19 99.4 72 55.6
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 8.5e-19 96.7 76 53.9
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 8.5e-19 96.7 76 51.3
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 1.1e-18 96.3 80 53.8
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 1.1e-18 96.3 80 53.8
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 1.4e-18 95.9 80 53.8
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 1.4e-18 95.9 76 53.9
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 1.9e-18 95.5 76 51.3
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 2.5e-18 95.1 80 55.0
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 3.2e-18 94.7 80 55.0
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 7.2e-18 93.6 80 55.0
PSO455G0143 Papaver somniferum HOM05D003762 ORTHO05D004374 7.2e-18 93.6 76 53.9
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 7.2e-18 93.6 80 53.8
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 9.3e-18 93.2 80 52.5
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 9.3e-18 93.2 80 53.8
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 9.3e-18 93.2 80 53.8
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 1.2e-17 92.8 77 53.2
Pp3c22_6800 Physcomitrium patens HOM05D003762 ORTHO05D004374 1.6e-17 92.4 76 52.6
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 2.1e-17 92.0 80 51.2
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 3.6e-17 91.3 75 46.7
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 4.6e-17 90.9 80 50.0
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 6.1e-17 90.5 79 50.6
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 6.1e-17 90.5 80 50.0
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 6.1e-17 90.5 77 53.2
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 6.1e-17 90.5 80 50.0
Atru.chr1.3022 Acer truncatum HOM05D003762 ORTHO05D004374 1.0e-16 89.7 83 53.0
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 1.0e-16 89.7 83 53.0
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 1.0e-16 89.7 76 51.3
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 1.3e-16 89.4 80 48.8
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 1.8e-16 89.0 73 50.7
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 2.3e-16 88.6 80 50.0
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 2.3e-16 88.6 80 48.8
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 2.3e-16 88.6 81 49.4
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 2.3e-16 88.6 76 50.0
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 3.0e-16 88.2 81 49.4
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 3.0e-16 88.2 80 50.0
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 3.9e-16 87.8 80 50.0
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 3.9e-16 87.8 81 49.4
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 5.1e-16 87.4 79 50.6
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 5.1e-16 87.4 79 50.6
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 5.1e-16 87.4 80 46.2
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 5.1e-16 87.4 80 50.0
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 5.1e-16 87.4 80 50.0
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 8.7e-16 86.7 80 47.5
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 8.7e-16 86.7 80 47.5
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 1.1e-15 86.3 80 50.0
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 1.1e-15 86.3 79 46.8
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 1.1e-15 86.3 80 47.5
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 1.5e-15 85.9 77 49.4
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 1.5e-15 85.9 77 53.2
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 1.9e-15 85.5 79 45.6
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 1.9e-15 85.5 77 49.4
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 1.9e-15 85.5 79 48.1
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 1.9e-15 85.5 76 47.4
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 1.9e-15 85.5 80 47.5
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 1.9e-15 85.5 80 50.0
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 1.9e-15 85.5 77 46.8
HanXRQChr03g0081131 Helianthus annuus HOM05D003762 ORTHO05D004374 2.5e-15 85.1 79 49.4
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 2.5e-15 85.1 77 46.8
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 2.5e-15 85.1 78 47.4
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 2.5e-15 85.1 73 49.3
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 3.3e-15 84.7 80 48.8
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 3.3e-15 84.7 80 47.5
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 3.3e-15 84.7 79 48.1
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 3.3e-15 84.7 79 46.8
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 3.3e-15 84.7 80 47.5
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 4.3e-15 84.3 81 48.1
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 4.3e-15 84.3 81 48.1
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 4.3e-15 84.3 80 48.8
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 4.3e-15 84.3 79 46.8
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 4.3e-15 84.3 79 46.8
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 4.3e-15 84.3 79 46.8
HPP92_015113 Vanilla planifolia HOM05D003762 ORTHO05D004374 4.3e-15 84.3 78 50.0
MD08G1239800 Malus domestica HOM05D003762 ORTHO05D004374 5.7e-15 84.0 76 48.7
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 5.7e-15 84.0 76 47.4
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 7.4e-15 83.6 74 51.4
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 7.4e-15 83.6 80 47.5
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 7.4e-15 83.6 79 46.8
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 7.4e-15 83.6 76 46.1
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 7.4e-15 83.6 76 46.1
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 7.4e-15 83.6 76 46.1
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 7.4e-15 83.6 76 46.1
CARHR189840 Cardamine hirsuta HOM05D003762 ORTHO05D004374 1.3e-14 82.8 76 44.7
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 1.3e-14 82.8 77 45.5
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 2.2e-14 82.0 78 46.2
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 2.2e-14 82.0 78 44.9
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 2.2e-14 82.0 83 47.0
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 2.8e-14 81.6 81 48.1
AT5G23710 Arabidopsis thaliana HOM05D003762 ORTHO05D004374 3.7e-14 81.3 80 43.8
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 3.7e-14 81.3 72 48.6
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 4.8e-14 80.9 80 46.2
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 4.8e-14 80.9 80 43.8
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 4.8e-14 80.9 79 46.8
Carub.0006s2146 Capsella rubella HOM05D003762 ORTHO05D004374 6.3e-14 80.5 80 43.8
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 6.3e-14 80.5 76 46.1
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 6.3e-14 80.5 80 45.0
TAR636G2311 Trochodendron aralioides HOM05D003762 ORTHO05D004374 6.3e-14 80.5 80 45.0
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 8.2e-14 80.1 81 46.9
Cre07.g314950 Chlamydomonas reinhardtii HOM05D003762 ORTHO05D004374 8.2e-14 80.1 76 48.7
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 8.2e-14 80.1 81 45.7
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 1.1e-13 79.7 76 47.4
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 1.4e-13 79.3 86 40.7
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 1.8e-13 79.0 81 46.9
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 1.8e-13 79.0 81 45.7
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.8e-13 79.0 78 42.3
Rhsim12G0192200 Rhododendron simsii HOM05D003762 ORTHO05D004374 1.8e-13 79.0 79 46.8
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 2.4e-13 78.6 80 43.8
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 3.1e-13 78.2 81 40.7
AL6G34980 Arabidopsis lyrata HOM05D003762 ORTHO05D004374 3.1e-13 78.2 80 41.2
Zm00001eb356740 Zea mays HOM05D003762 ORTHO05D004374 3.1e-13 78.2 67 47.8
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 4.1e-13 77.8 80 42.5
BcaNung01845 Brassica carinata HOM05D003762 ORTHO05D004374 5.3e-13 77.4 80 43.8
C07p43880 Brassica napus HOM05D003762 ORTHO05D004374 5.3e-13 77.4 80 43.8
BolC7t44916H Brassica oleracea HOM05D003762 ORTHO05D004374 5.3e-13 77.4 80 43.8
Medtr0003s0690 Medicago truncatula HOM05D003762 ORTHO05D004374 5.3e-13 77.4 76 46.1
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 5.3e-13 77.4 73 45.2
A06p34610 Brassica napus HOM05D003762 ORTHO05D004374 6.9e-13 77.0 80 42.5
BraA06t26389Z Brassica rapa HOM05D003762 ORTHO05D004374 6.9e-13 77.0 80 42.5
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 6.9e-13 77.0 80 45.0
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 6.9e-13 77.0 80 42.5
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 1.2e-12 76.3 80 41.2
THA.LOC104798921 Tarenaya hassleriana HOM05D003762 ORTHO05D004374 1.2e-12 76.3 82 43.9
BraA09t36329Z Brassica rapa HOM05D003762 ORTHO05D004374 1.5e-12 75.9 80 42.5
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 2.0e-12 75.5 81 44.4
vmacro16904 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 2.0e-12 75.5 94 36.2
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 3.4e-12 74.7 81 38.3
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 3.4e-12 74.7 70 45.7
Nitab4.5_0009310g0060 Nicotiana tabacum HOM05D003762 ORTHO05D004374 4.5e-12 74.3 73 41.1
TPR.G19896 Trifolium pratense HOM05D003762 ORTHO05D004374 5.9e-12 73.9 80 43.8
A09p06830 Brassica napus HOM05D003762 ORTHO05D004374 7.7e-12 73.6 80 42.5
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 1.0e-11 73.2 73 45.2
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 1.3e-11 72.8 74 44.6
BolC9t53671H Brassica oleracea HOM05D003762 ORTHO05D004374 1.7e-11 72.4 80 42.5
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 1.7e-11 72.4 81 43.2
BcaC04g23509 Brassica carinata HOM05D003762 ORTHO05D004374 2.2e-11 72.0 80 41.2
C09p07550 Brassica napus HOM05D003762 ORTHO05D004374 5.0e-11 70.9 80 41.2
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 5.0e-11 70.9 80 45.0
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 1.1e-10 69.7 80 41.2
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 1.9e-10 68.9 81 42.0
unitig_0.g2831 Utricularia gibba HOM05D003762 ORTHO05D004374 5.5e-10 67.4 77 39.0
BcaB04g19852 Brassica carinata HOM05D003762 ORTHO05D004374 1.6e-09 65.9 81 42.0
BcaB04g19853 Brassica carinata HOM05D003762 ORTHO05D004374 1.6e-09 65.9 81 42.0
MCO15G473 Micromonas commoda HOM05D003762 ORTHO05D004374 1.6e-09 65.9 39 64.1
Ciclev10009494m.g Citrus clementina HOM05D003762 ORTHO05D004374 7.9e-09 63.5 40 60.0
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 7.9e-09 63.5 66 45.5
Nn1g05046 Nelumbo nucifera HOM05D002280 ORTHO05D002322 3.0e-08 61.6 62 48.4
Os06g0603400 Oryza sativa ssp. japonica HOM05D003762 ORTHO05D004374 3.9e-08 61.2 30 76.7
vmacro18986 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 5.1e-08 60.8 62 38.7
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 6.7e-08 60.5 76 40.8
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.5e-07 59.3 38 57.9
VMungo0720G1683 Vigna mungo HOM05D003762 ORTHO05D004374 1.3e-06 56.2 63 39.7


User provided reference genes

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